Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Forward (+)

19195060 .. 19196309

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0204700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTGTCCGAAAATCCTGAAATGATAAAAAAAGTTGATGAACTTGGTTGGACTCCCTTACACTATGCAGCATTCAGTGGGAATGTTGAAGCAATTGGATTGCTGATACAACGCGACAGTTCTGCGGCTTACATCTTAGACAGATATTCCACATATGCTCTTCATGTTGCAGCGTACGCAGGCTGTGTAAAAGTAATTAAAGAGTTGATTCGATTGCGGCCTGCTACTTGTGATCTGCTCAACCACGAAGGCCAAACGGTTGTACATGCTGCAGTTTTGGGTAAAAACCTGAATGTTATCAAGTACATTTTGAAGACGCCTGAGCCAGCAGGACTTGTAAACGAAGCAGACAATGGGGGAAATACTCGTTTGCATCTGGCTGCCTTTCAAGAATATAAGACAATTATGATAGTCTTGGCAATGGACCGCAAAGTTGACAAGACTGCAACAAATAATGACCACTTGAAAGCCATTGATATCTTCCTTGTTGACGATATTGAAATGGAATCCTATCATACGTATTGGGTCTTGTCCATTTTCGACAGGTCTACCAGTGTGCTAACTTTCCAGCGATATGTGCGCCGTGACTTCATGAAATTGGAATCATCTGAGGATGGGAAGGCTACATCCACCACCGCGACCAATGCGAACGATGAATCAGTGGAAGCTTTGTTGGATGTCTCGAAAAGATTTGACACAAATCTAGTAGTTGCCATGCTTATTGCTACTGTCACTTTTTCAGCAGCGTTCACCATTCCCGGGGGATATAATAGCAACGGCATGGCGATTTTACACCGAAGGATATTTTTCGTAGTATTCGTGATGTTTGACACCATCTCCTTCTGCTTATCGCTCCTTGTGGTGTTTAATCATTTTATGGTGTCAACTACGTCACGAAACATTCTAACCACACCTTCAGTTTTCATTCGCTTTTCCATTGCAGCAATGGTGGTAGCATTTGGTTCGGGTATGTTTGTAGTGCTACCCAAGTATGGTCCACCCGGCATTTTGGTCATTCTAATATGCGGCGCTTTATGCCTCGCCATTATCAGAACGAAGAGGTTTGTCCTACCAAACTTGACCAAGACTCGCGATTGGGTCCGTACCCGCATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031326 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051510 GO:0051512 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

372

Amino Acids

41.47

Weight (kDa)

8.49

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	11 - 70	7.1e-09	Ankyrin repeats (3 copies)
Ank_2	PF12796	54 - 150	2.1e-11	Ankyrin repeats (3 copies)
Ank_4	PF13637	54 - 103	4.3e-06	Ankyrin repeats (many copies)
PGG	PF13962	229 - 327	2.8e-21	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	548
AccII	CGCG	3 cut(s)	114, 638, 1092
AciI	CCGC	6 cut(s)	125, 217, 427, 636, 1026, 1108
AcuI	CTGAAG	1 cut(s)	900
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	4 cut(s)	176, 264, 305, 1105
AfiI	CCNNNNNNNGG	2 cut(s)	759, 992
AgsI	TTSAA	5 cut(s)	89, 313, 389, 466, 500
AluBI	AGCT	1 cut(s)	668
AluI	AGCT	1 cut(s)	668
Alw26I	GTCTC	1 cut(s)	685
Ama87I	CYCGRG	1 cut(s)	758
AoxI	GGCC	2 cut(s)	218, 250
ApeKI	GCWGC	6 cut(s)	68, 170, 269, 380, 743, 941
AspLEI	GCGC	2 cut(s)	582, 1031
AspS9I	GGNCC	3 cut(s)	424, 995, 1099
AsuC2I	CCSGG	3 cut(s)	759, 760, 1002
AsuHPI	GGTGA	1 cut(s)	742
AvaI	CYCGRG	1 cut(s)	758
AvaII	GGWCC	3 cut(s)	424, 995, 1099
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	6 cut(s)	80, 182, 256, 367, 755, 953
BccI	CCATC	2 cut(s)	608, 842
BceAI	ACGGC	2 cut(s)	567, 793
BcgI	CGANNNNNNTGC	4 cut(s)	104, 138, 945, 979
BcnI	CCSGG	3 cut(s)	759, 760, 1002
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	1032
BisI	GCNGC	9 cut(s)	69, 126, 171, 218, 270, 381, 744, 942, 1027
BlsI	GCNGC	9 cut(s)	70, 127, 172, 219, 271, 382, 745, 943, 1028
Bme1390I	CCNGG	3 cut(s)	759, 760, 1002
Bme18I	GGWCC	3 cut(s)	424, 995, 1099
BmeT110I	CYCGRG	1 cut(s)	758
BmgT120I	GGNCC	3 cut(s)	424, 995, 1099
BmiI	GGNNCC	1 cut(s)	1100
BmrFI	CCNGG	3 cut(s)	759, 760, 1002
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	321
BpuMI	CCSGG	3 cut(s)	759, 760, 1002
BsaAI	YACGTR	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	758, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	2 cut(s)	759, 992
Bse1I	ACTGG	1 cut(s)	552
Bse3DI	GCAATG	3 cut(s)	426, 936, 951
BseDI	CCNNGG	2 cut(s)	758, 759
BseGI	GGATG	3 cut(s)	619, 626, 682
BseLI	CCNNNNNNNGG	2 cut(s)	759, 992
BseMI	GCAATG	3 cut(s)	426, 936, 951
BseMII	CTCAG	2 cut(s)	312, 600
BseNI	ACTGG	1 cut(s)	552
BseXI	GCAGC	6 cut(s)	80, 182, 256, 367, 755, 953
Bsh1236I	CGCG	3 cut(s)	114, 638, 1092
BshFI	GGCC	2 cut(s)	220, 252
BsiHKCI	CYCGRG	1 cut(s)	758
BsiSI	CCGG	2 cut(s)	759, 1002
BsiWI	CGTACG	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	759, 992
BsmAI	GTCTC	1 cut(s)	685
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	220, 252
BsoBI	CYCGRG	1 cut(s)	758
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	232
Bsp68I	TCGCGA	1 cut(s)	1092
BspACI	CCGC	6 cut(s)	125, 217, 427, 636, 1026, 1108
BspANI	GGCC	2 cut(s)	220, 252
BspCNI	CTCAG	2 cut(s)	313, 601
BspFNI	CGCG	3 cut(s)	114, 638, 1092
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	1100
BspMAI	CTGCAG	1 cut(s)	274
BspQI	GCTCTTC	1 cut(s)	165
BsrDI	GCAATG	3 cut(s)	426, 936, 951
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	552
BssECI	CCNNGG	2 cut(s)	758, 759
BssMI	GATC	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	317
Bst4CI	ACNGT	3 cut(s)	119, 259, 730
Bst6I	CTCTTC	2 cut(s)	165, 1052
BstACI	GRCGYC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	519
BstC8I	GCNNGC	3 cut(s)	181, 222, 327
BstDEI	CTNAG	3 cut(s)	136, 321, 609
BstF5I	GGATG	3 cut(s)	619, 626, 682
BstFNI	CGCG	3 cut(s)	114, 638, 1092
BstH2I	RGCGCY	1 cut(s)	1032
BstHHI	GCGC	2 cut(s)	582, 1031
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 577, 644, 1035
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	3 cut(s)	757, 758, 1000
BstSFI	CTRYAG	1 cut(s)	270
BstSNI	TACGTA	1 cut(s)	519
BstUI	CGCG	3 cut(s)	114, 638, 1092
BstV1I	GCAGC	6 cut(s)	80, 182, 256, 367, 755, 953
BstV2I	GAAGAC	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	220, 252
BtsCI	GGATG	3 cut(s)	619, 626, 682
BtsIMutI	CAGTG	3 cut(s)	82, 559, 666
BtuMI	TCGCGA	1 cut(s)	1092
Cac8I	GCNNGC	3 cut(s)	181, 222, 327
CciI	TCATGA	1 cut(s)	591
CfoI	GCGC	2 cut(s)	582, 1031
Cfr13I	GGNCC	3 cut(s)	424, 995, 1099
Cfr9I	CCCGGG	1 cut(s)	758
CseI	GACGC	1 cut(s)	325
Csp6I	GTAC	4 cut(s)	175, 263, 304, 1104
CviAII	CATG	5 cut(s)	164, 266, 592, 715, 781
CviJI	RGCY	9 cut(s)	128, 183, 220, 252, 325, 380, 470, 623, 668
CviKI_1	RGCY	9 cut(s)	128, 183, 220, 252, 325, 380, 470, 623, 668
CviQI	GTAC	4 cut(s)	175, 263, 304, 1104
DdeI	CTNAG	3 cut(s)	136, 321, 609
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	165, 1052
EarI	CTCTTC	2 cut(s)	165, 1052
Eco105I	TACGTA	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	3 cut(s)	424, 995, 1099
Eco57I	CTGAAG	1 cut(s)	900
Eco88I	CYCGRG	1 cut(s)	758
EcoRV	GATATC	1 cut(s)	478
FaeI	CATG	5 cut(s)	167, 269, 595, 718, 784
FatI	CATG	5 cut(s)	163, 265, 591, 714, 780
FauI	CCCGC	1 cut(s)	1115
FauNDI	CATATG	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	9 cut(s)	69, 126, 171, 218, 270, 381, 744, 942, 1027
FokI	GGATG	3 cut(s)	613, 626, 689
Fsp4HI	GCNGC	9 cut(s)	69, 126, 171, 218, 270, 381, 744, 942, 1027
FspBI	CTAG	1 cut(s)	704
GlaI	GCGC	2 cut(s)	581, 1030
GluI	GCNGC	9 cut(s)	69, 126, 171, 218, 270, 381, 744, 942, 1027
HaeII	RGCGCY	1 cut(s)	1032
HaeIII	GGCC	2 cut(s)	220, 252
HapII	CCGG	2 cut(s)	759, 1002
HgaI	GACGC	1 cut(s)	325
HhaI	GCGC	2 cut(s)	582, 1031
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	5 cut(s)	167, 269, 595, 718, 784
Hin6I	GCGC	2 cut(s)	580, 1029
HinP1I	GCGC	2 cut(s)	580, 1029
HincII	GTYRAC	3 cut(s)	436, 490, 885
HindII	GTYRAC	3 cut(s)	436, 490, 885
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	6 cut(s)	52, 208, 506, 602, 656, 1087
HpaII	CCGG	2 cut(s)	759, 1002
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	7 cut(s)	340, 436, 490, 549, 750, 885, 998
Hpy188I	TCNGA	3 cut(s)	10, 610, 1052
Hpy188III	TCNNGA	7 cut(s)	17, 389, 592, 682, 820, 894, 1091
Hpy8I	GTNNAC	7 cut(s)	340, 436, 490, 549, 750, 885, 998
HpyAV	CCTTC	5 cut(s)	242, 613, 792, 850, 924
HpyCH4III	ACNGT	3 cut(s)	119, 259, 730
HpyCH4IV	ACGT	2 cut(s)	518, 890
HpyCH4V	TGCA	6 cut(s)	68, 170, 272, 373, 446, 941
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 577, 644, 1035
HpyF3I	CTNAG	3 cut(s)	136, 321, 609
HpySE526I	ACGT	2 cut(s)	518, 890
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	5 cut(s)	167, 269, 595, 718, 784
HspAI	GCGC	2 cut(s)	580, 1029
Kzo9I	GATC	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	858
Lsp1109I	GCAGC	6 cut(s)	80, 182, 256, 367, 755, 953
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	2 cut(s)	518, 890
MaeIII	GTNAC	3 cut(s)	584, 730, 891
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	4 cut(s)	152, 325, 472, 1069
MfeI	CAATTG	1 cut(s)	93
MluCI	AATT	4 cut(s)	93, 195, 402, 596
MlyI	GAGTC	2 cut(s)	46, 1081
MmeI	TCCRAC	2 cut(s)	29, 654
MnlI	CCTC	3 cut(s)	604, 1049, 1053
MseI	TTAA	2 cut(s)	198, 867
MspI	CCGG	2 cut(s)	759, 1002
MspR9I	CCNGG	3 cut(s)	759, 760, 1002
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	71
MvnI	CGCG	3 cut(s)	114, 638, 1092
MwoI	GCNNNNNNNGC	4 cut(s)	176, 577, 644, 1035
NciI	CCSGG	3 cut(s)	759, 760, 1002
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	5 cut(s)	167, 269, 595, 718, 784
NlaIV	GGNNCC	1 cut(s)	1100
NmuCI	GTSAC	3 cut(s)	584, 730, 891
NruI	TCGCGA	1 cut(s)	1092
NspI	RCATGY	1 cut(s)	269
PagI	TCATGA	1 cut(s)	591
PciSI	GCTCTTC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	816
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	4 cut(s)	208, 506, 602, 656
Pfl23II	CGTACG	1 cut(s)	174
PkrI	GCNGC	9 cut(s)	70, 127, 172, 219, 271, 382, 745, 943, 1028
PleI	GAGTC	2 cut(s)	46, 1081
PpsI	GAGTC	2 cut(s)	46, 1081
Ppu21I	YACGTR	1 cut(s)	519
PspLI	CGTACG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	1100
PspPI	GGNCC	3 cut(s)	424, 995, 1099
PstI	CTGCAG	1 cut(s)	274
RruI	TCGCGA	1 cut(s)	1092
RsaI	GTAC	4 cut(s)	176, 264, 305, 1105
RsaNI	GTAC	4 cut(s)	175, 263, 304, 1104
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	198, 867
SatI	GCNGC	9 cut(s)	69, 126, 171, 218, 270, 381, 744, 942, 1027
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	3 cut(s)	424, 995, 1099
SchI	GAGTC	2 cut(s)	46, 1081
ScrFI	CCNGG	3 cut(s)	759, 760, 1002
SetI	ASST	7 cut(s)	291, 521, 548, 670, 893, 916, 1064
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	3 cut(s)	424, 995, 1099
SmaI	CCCGGG	1 cut(s)	760
SnaBI	TACGTA	1 cut(s)	519
Sse9I	AATT	4 cut(s)	93, 195, 402, 596
SsiI	CCGC	6 cut(s)	125, 217, 427, 636, 1026, 1108
SspMI	CTAG	1 cut(s)	704
StyD4I	CCNGG	3 cut(s)	757, 758, 1000
TaaI	ACNGT	3 cut(s)	119, 259, 730
TaiI	ACGT	2 cut(s)	521, 893
TaqI	TCGA	3 cut(s)	211, 540, 683
TasI	AATT	4 cut(s)	93, 195, 402, 596
TatI	WGTACW	2 cut(s)	262, 303
TauI	GCSGC	3 cut(s)	128, 220, 1029
TfiI	GAWTC	4 cut(s)	208, 506, 602, 656
Tru1I	TTAA	2 cut(s)	198, 867
Tru9I	TTAA	2 cut(s)	198, 867
TscAI	CASTG	3 cut(s)	82, 559, 666
TseFI	GTSAC	3 cut(s)	584, 730, 891
TseI	GCWGC	6 cut(s)	68, 170, 269, 380, 743, 941
Tsp45I	GTSAC	3 cut(s)	584, 730, 891
TspDTI	ATGAA	6 cut(s)	54, 152, 580, 608, 669, 913
TspGWI	ACGGA	1 cut(s)	1091
TspMI	CCCGGG	1 cut(s)	758
TspRI	CASTG	3 cut(s)	82, 559, 666
VpaK11BI	GGWCC	3 cut(s)	424, 995, 1099
XceI	RCATGY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XmaI	CCCGGG	1 cut(s)	758
XmiI	GTMKAC	1 cut(s)	548
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.