Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Forward (+)

10829440 .. 10830284

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G138500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTCGACAATAATAATAATAATATTGGGGCAAGTGGTGCTGCAAATCATGATGAGGACGGCGCTATGATGAAAGAGCAAGAGCAGTTGCTGCCAATAGCCAACGTTGGGCGGATCATGAGGCAAATACTGCCACCCAACGCCAAGATCTCCAAGGAGGCCAAGGAAACCATGCAAGAGTGTGTCTCGGAGTTCATCAGCTTCGTCACCAGCGAGGCGTCGGAGAAGTGCCGCAAGGAGAGGCGAAAGACCGTGAACGGCGACGATGTCTCCTGGGCTCTCGGAGCCCTGGGTTTCGAAGACTACACCGGCCCATTGCGGAGGTTCTTACACAGGTACAGAGAGCAAGAAGGAGAGAGAATATCATCATCAGCAGCTAATAATAATAATAATAATAATGAAAATAATCAAGACAAGGATAACAACAACCCCGAAGATCAACAACAAAGGAAATTGCTCAACCATCCTCATATACAAAGACCTAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

164

Amino Acids

18.55

Weight (kDa)

5.62

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	3 cut(s)	112, 232, 319
AclI	AACGTT	1 cut(s)	105
AclWI	GGATC	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	108
AjnI	CCWGG	2 cut(s)	272, 288
AluBI	AGCT	2 cut(s)	201, 377
AluI	AGCT	2 cut(s)	201, 377
Alw26I	GTCTC	2 cut(s)	190, 274
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	2 cut(s)	159, 310
ApeKI	GCWGC	3 cut(s)	41, 91, 374
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	199
AsuII	TTCGAA	1 cut(s)	297
BanII	GRGCYC	2 cut(s)	280, 289
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	28, 78, 386
BccI	CCATC	1 cut(s)	471
BceAI	ACGGC	2 cut(s)	76, 274
BciT130I	CCWGG	2 cut(s)	274, 290
BcoDI	GTCTC	2 cut(s)	190, 274
BfoI	RGCGCY	1 cut(s)	66
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	4 cut(s)	42, 92, 232, 375
BlsI	GCNGC	4 cut(s)	43, 93, 233, 376
Bme1390I	CCNGG	2 cut(s)	274, 290
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	274, 290
BpiI	GAAGAC	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu14I	TTCGAA	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	5 cut(s)	153, 162, 273, 288, 289
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	274, 290
BseDI	CCNNGG	5 cut(s)	153, 162, 273, 288, 289
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	28, 78, 386
BshFI	GGCC	2 cut(s)	161, 312
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	190, 274
BsnI	GGCC	2 cut(s)	161, 312
Bsp119I	TTCGAA	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	280, 289
Bsp143I	GATC	3 cut(s)	114, 147, 436
BspACI	CCGC	3 cut(s)	112, 232, 319
BspANI	GGCC	2 cut(s)	161, 312
BspHI	TCATGA	2 cut(s)	49, 117
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	5 cut(s)	153, 162, 273, 288, 289
BssMI	GATC	3 cut(s)	114, 147, 436
BssNI	GRCGYC	1 cut(s)	218
BssT1I	CCWWGG	2 cut(s)	153, 162
Bst2UI	CCWGG	2 cut(s)	274, 290
Bst4CI	ACNGT	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	218
BstAPI	GCANNNNNTGC	3 cut(s)	38, 91, 130
BstBI	TTCGAA	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	463
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	3 cut(s)	117, 150, 439
BstMAI	GTCTC	2 cut(s)	190, 274
BstMBI	GATC	3 cut(s)	114, 147, 436
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 91, 130, 284
BstNI	CCWGG	2 cut(s)	274, 290
BstSCI	CCNGG	2 cut(s)	272, 288
BstV1I	GCAGC	3 cut(s)	28, 78, 386
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	161, 312
BtsCI	GGATG	1 cut(s)	463
CaiI	CAGNNNCTG	1 cut(s)	91
CciI	TCATGA	2 cut(s)	49, 117
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	311
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	3 cut(s)	50, 118, 172
CviJI	RGCY	7 cut(s)	101, 161, 201, 278, 287, 312, 377
CviKI_1	RGCY	7 cut(s)	101, 161, 201, 278, 287, 312, 377
CviQI	GTAC	1 cut(s)	337
DpnI	GATC	3 cut(s)	116, 149, 438
DpnII	GATC	3 cut(s)	114, 147, 436
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	153, 162
Eco24I	GRGCYC	2 cut(s)	280, 289
EcoRII	CCWGG	2 cut(s)	272, 288
EcoT14I	CCWWGG	2 cut(s)	153, 162
EcoT38I	GRGCYC	2 cut(s)	280, 289
ErhI	CCWWGG	2 cut(s)	153, 162
FaeI	CATG	3 cut(s)	53, 121, 175
FaiI	YATR	6 cut(s)	51, 68, 119, 173, 471, 473
FatI	CATG	3 cut(s)	49, 117, 171
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	4 cut(s)	42, 92, 232, 375
FokI	GGATG	1 cut(s)	450
FriOI	GRGCYC	2 cut(s)	280, 289
Fsp4HI	GCNGC	4 cut(s)	42, 92, 232, 375
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	4 cut(s)	42, 92, 232, 375
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	161, 312
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	53, 121, 175
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	7, 256
Hpy188I	TCNGA	3 cut(s)	190, 223, 284
Hpy188III	TCNNGA	3 cut(s)	50, 118, 410
Hpy8I	GTNNAC	2 cut(s)	7, 256
Hpy99I	CGWCG	2 cut(s)	223, 266
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	44, 175
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 91, 130, 284
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	53, 121, 175
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	114, 147, 436
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	7 cut(s)	223, 259, 275, 286, 302, 319, 322
Lsp1109I	GCAGC	3 cut(s)	28, 78, 386
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	3 cut(s)	116, 149, 438
MboI	GATC	3 cut(s)	114, 147, 436
MboII	GAAGA	2 cut(s)	311, 446
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	280, 289
MluCI	AATT	2 cut(s)	452, 484
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	7 cut(s)	49, 114, 151, 208, 234, 315, 477
MseI	TTAA	1 cut(s)	490
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	2 cut(s)	274, 290
MvaI	CCWGG	2 cut(s)	274, 290
MwoI	GCNNNNNNNGC	4 cut(s)	38, 91, 130, 284
NdeII	GATC	3 cut(s)	114, 147, 436
NlaIII	CATG	3 cut(s)	53, 121, 175
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	205
NspV	TTCGAA	1 cut(s)	297
PagI	TCATGA	2 cut(s)	49, 117
PasI	CCCWGGG	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	43, 93, 233, 376
Psp1406I	AACGTT	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	272, 288
PspGI	CCWGG	2 cut(s)	272, 288
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	147
PsyI	GACNNNGTC	1 cut(s)	266
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	4 cut(s)	42, 92, 232, 375
Sau3AI	GATC	3 cut(s)	114, 147, 436
Sau96I	GGNCC	1 cut(s)	311
ScrFI	CCNGG	2 cut(s)	274, 290
SduI	GDGCHC	2 cut(s)	280, 289
SetI	ASST	6 cut(s)	108, 203, 326, 338, 379, 484
SfuI	TTCGAA	1 cut(s)	297
Sse9I	AATT	2 cut(s)	452, 484
SsiI	CCGC	3 cut(s)	112, 232, 319
SspI	AATATT	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	272, 288
StyI	CCWWGG	2 cut(s)	153, 162
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	6, 297
TasI	AATT	2 cut(s)	452, 484
TauI	GCSGC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	3 cut(s)	41, 91, 374
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	86, 184, 414
Tth111I	GACNNNGTC	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.