Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000162.1

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Forward (+)

154659 .. 155207

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000162.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atggtagataacagaggcaacaacaataatattagtccagactccagagaagggtttaactacaatttcgcaggtgatcgtcaccatcacgatgaggtgattaaggagcaagatcggctgcttccgatagcaaacgtcggtcggatcatgaagcaaatccttccccccaatgccaaaatttcgaaagaggccaaggaaaccatgcaagagtgcgtctcggagttcattagctttgtgaccggagaagcctccgacaagtgtcacaaggagaagcgaaagacggtgaatggtgacgacatttgctgggccttatccacgctggggttcgacgactactcggagccgctgaagaggtacttgaataggttcagggaattggagggggagaaggctcagcagagcaaggccaacagcggcggtgaagatcaaaggaacgaagtaggggaagtgtcaccgacaagagcaagtactgcttccagttctaatccattaatgaagttcaatatgatcaatgaaaggggtaatagctcaatctctcggcgattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

182

Amino Acids

20.6

Weight (kDa)

6.45

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	62
AciI	CCGC	3 cut(s)	344, 414, 417
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	2 cut(s)	356, 469
AfiI	CCNNNNNNNGG	2 cut(s)	51, 321
AgsI	TTSAA	2 cut(s)	361, 502
AluBI	AGCT	2 cut(s)	231, 528
AluI	AGCT	2 cut(s)	231, 528
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	3 cut(s)	189, 306, 405
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	177
AseI	ATTAAT	1 cut(s)	491
Asp700I	GAANNNNTTC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	7 cut(s)	74, 86, 109, 295, 302, 431, 444
AsuII	TTCGAA	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	1 cut(s)	93
BclI	TGATCA	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	220
BfuAI	ACCTGC	1 cut(s)	62
BisI	GCNGC	3 cut(s)	119, 344, 415
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	3 cut(s)	120, 345, 416
BmcAI	AGTACT	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	342
BoxI	GACNNNNGTC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	28
Bpu1102I	GCTNAGC	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 321
Bse1I	ACTGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	51, 321
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	105
BseYI	CCCAGC	2 cut(s)	303, 319
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	3 cut(s)	191, 308, 407
BsiEI	CGRYCG	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	51, 321
BsmAI	GTCTC	1 cut(s)	220
BsmBI	CGTCTC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	191, 308, 407
Bsp119I	TTCGAA	1 cut(s)	182
Bsp143I	GATC	5 cut(s)	76, 112, 144, 424, 507
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	3 cut(s)	344, 414, 417
BspANI	GGCC	3 cut(s)	191, 308, 407
BspCNI	CTCAG	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	342
BspMI	ACCTGC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	152
BspT104I	TTCGAA	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	5 cut(s)	76, 112, 144, 424, 507
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	393
BstKTI	GATC	5 cut(s)	79, 115, 147, 427, 510
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	5 cut(s)	76, 112, 144, 424, 507
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 470
BstPAI	GACNNNNGTC	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	191, 308, 407
BveI	ACCTGC	1 cut(s)	62
CciI	TCATGA	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	306
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	355, 468
CviAII	CATG	2 cut(s)	148, 202
CviJI	RGCY	9 cut(s)	118, 191, 231, 248, 308, 343, 392, 407, 528
CviKI_1	RGCY	9 cut(s)	118, 191, 231, 248, 308, 343, 392, 407, 528
CviQI	GTAC	2 cut(s)	355, 468
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	5 cut(s)	78, 114, 146, 426, 509
DpnII	GATC	5 cut(s)	76, 112, 144, 424, 507
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	2 cut(s)	151, 205
FaiI	YATR	3 cut(s)	149, 203, 506
FalI	AAGNNNNNCTT	4 cut(s)	341, 373, 457, 489
FatI	CATG	2 cut(s)	147, 201
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	3 cut(s)	119, 344, 415
Fsp4HI	GCNGC	3 cut(s)	119, 344, 415
GluI	GCNGC	3 cut(s)	119, 344, 415
GsaI	CCCAGC	2 cut(s)	307, 323
GsuI	CTGGAG	1 cut(s)	28
HaeIII	GGCC	3 cut(s)	191, 308, 407
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	202
Hin1II	CATG	2 cut(s)	151, 205
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	7 cut(s)	74, 86, 109, 295, 302, 431, 444
Hpy188I	TCNGA	5 cut(s)	126, 144, 220, 253, 340
Hpy188III	TCNNGA	4 cut(s)	38, 45, 89, 148
Hpy99I	CGWCG	2 cut(s)	140, 332
HpyAV	CCTTC	3 cut(s)	44, 170, 382
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 470
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	151, 205
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	5 cut(s)	76, 112, 144, 424, 507
LmnI	GCTCC	2 cut(s)	106, 340
LpnPI	CCDG	8 cut(s)	51, 57, 58, 253, 289, 305, 355, 490
Lsp1109I	GCAGC	1 cut(s)	105
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	5 cut(s)	80, 235, 260, 290, 450
MalI	GATC	5 cut(s)	78, 114, 146, 426, 509
MboI	GATC	5 cut(s)	76, 112, 144, 424, 507
MboII	GAAGA	2 cut(s)	361, 434
MluCI	AATT	3 cut(s)	64, 177, 374
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	122, 276
MnlI	CCTC	6 cut(s)	8, 88, 181, 259, 345, 373
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	3 cut(s)	57, 102, 491
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	2 cut(s)	346, 414
MspI	CCGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	115, 470
NdeII	GATC	5 cut(s)	76, 112, 144, 424, 507
NlaIII	CATG	2 cut(s)	151, 205
NlaIV	GGNNCC	1 cut(s)	342
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	5 cut(s)	80, 235, 260, 290, 450
NspV	TTCGAA	1 cut(s)	182
PagI	TCATGA	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	120, 345, 416
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PshAI	GACNNNNGTC	1 cut(s)	258
PshBI	ATTAAT	1 cut(s)	491
PspFI	CCCAGC	2 cut(s)	303, 319
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	306
RsaI	GTAC	2 cut(s)	356, 469
RsaNI	GTAC	2 cut(s)	355, 468
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	57, 102, 491
SatI	GCNGC	3 cut(s)	119, 344, 415
Sau3AI	GATC	5 cut(s)	76, 112, 144, 424, 507
Sau96I	GGNCC	1 cut(s)	306
ScaI	AGTACT	1 cut(s)	469
SchI	GAGTC	1 cut(s)	35
SetI	ASST	7 cut(s)	76, 99, 138, 233, 356, 368, 530
SfuI	TTCGAA	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	64, 177, 374
SsiI	CCGC	3 cut(s)	344, 414, 417
SspI	AATATT	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	182, 327
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	64, 177, 374
TatI	WGTACW	1 cut(s)	467
TauI	GCSGC	2 cut(s)	346, 417
Tru1I	TTAA	3 cut(s)	57, 102, 491
Tru9I	TTAA	3 cut(s)	57, 102, 491
TseFI	GTSAC	5 cut(s)	80, 235, 260, 290, 450
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	5 cut(s)	80, 235, 260, 290, 450
TspDTI	ATGAA	4 cut(s)	164, 214, 509, 528
VspI	ATTAAT	1 cut(s)	491
XapI	RAATTY	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	365
ZrmI	AGTACT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.