Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Forward (+)

41788083 .. 41788580

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1302500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTTGATAATATAGGAAACAATAATTCATCGGATAGAGAAGGGTTTAAGTACAATTTCACAGGTGGTGGTAGTGTCTCTAGTGATTATCACCACCATCTTCATCATCAAGAGGGGGTCATCAAGGAGCCAGATCGGTTGCTTCCAATTGCTAATGTTGGGCGAATCATGAAGCAGAATTTGCCCCCGAATGCGAAAATCTCGAAAGAAGCCAAAGAAACCATGCAAGAATGTGTTTCTGAGTTCATAAGTTTCGTGACTGGAGAAGCATCTGACAAGTGCCACAAAGAGAAGCGCAAGACGGTGAATGGGGATGACATTTGCTGGGCTCTGGCAACCCTTGGATTCGATGATTACGCTGAGCCACTGAAGAGGTACTTGCATAGGTACAGAGAATTGGAAGGAGAGAAGGCTGCTAACCAAGGTAAGGCTAATAGTAATGAAGAACAAACTGCCACCAAGGACAAGATTTCCTACAGCAGCAGCAAATACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

166

Amino Acids

18.6

Weight (kDa)

6.38

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	36 - 111	4.2e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	47 - 111	1e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	3 cut(s)	53, 377, 389
AfiI	CCNNNNNNNGG	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	82
ApeKI	GCWGC	3 cut(s)	413, 480, 483
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	83, 316
BanII	GRGCYC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	400, 492
BccI	CCATC	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	475
BisI	GCNGC	3 cut(s)	414, 481, 484
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	3 cut(s)	415, 482, 485
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	340, 421, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	265
BseDI	CCNNGG	3 cut(s)	340, 421, 459
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	231, 351
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	400, 492
BseYI	CCCAGC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	133
Bsp1720I	GCTNAGC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	232, 352
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	340, 421, 459
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	3 cut(s)	340, 421, 459
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	365
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	240, 360
BstF5I	GGATG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	400, 492
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	365
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	1 cut(s)	297
Csp6I	GTAC	3 cut(s)	52, 376, 388
CviAII	CATG	2 cut(s)	169, 223
CviJI	RGCY	6 cut(s)	130, 212, 329, 364, 413, 431
CviKI_1	RGCY	6 cut(s)	130, 212, 329, 364, 413, 431
CviQI	GTAC	3 cut(s)	52, 376, 388
DdeI	CTNAG	2 cut(s)	240, 360
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco130I	CCWWGG	3 cut(s)	340, 421, 459
Eco24I	GRGCYC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	389
EcoT14I	CCWWGG	3 cut(s)	340, 421, 459
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	3 cut(s)	340, 421, 459
FaeI	CATG	2 cut(s)	172, 226
FaiI	YATR	5 cut(s)	14, 170, 224, 248, 384
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	2 cut(s)	168, 222
Fnu4HI	GCNGC	3 cut(s)	414, 481, 484
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	3 cut(s)	414, 481, 484
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	3 cut(s)	414, 481, 484
GsaI	CCCAGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	282
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	172, 226
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	165, 345
HphI	GGTGA	2 cut(s)	83, 316
Hpy188I	TCNGA	3 cut(s)	34, 241, 274
Hpy188III	TCNNGA	4 cut(s)	110, 169, 202, 256
HpyAV	CCTTC	3 cut(s)	35, 395, 403
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	2 cut(s)	226, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	2 cut(s)	240, 360
Hsp92II	CATG	2 cut(s)	172, 226
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	5 cut(s)	48, 144, 246, 310, 317
Lsp1109I	GCAGC	2 cut(s)	400, 492
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	3 cut(s)	92, 382, 455
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	5 cut(s)	25, 55, 147, 178, 395
MnlI	CCTC	2 cut(s)	106, 366
MseI	TTAA	1 cut(s)	48
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	181
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	172, 226
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	256
PagI	TCATGA	1 cut(s)	168
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	165, 345
PkrI	GCNGC	3 cut(s)	415, 482, 485
PspFI	CCCAGC	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	129
RsaI	GTAC	3 cut(s)	53, 377, 389
RsaNI	GTAC	3 cut(s)	52, 376, 388
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	3 cut(s)	414, 481, 484
Sau3AI	GATC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	5 cut(s)	67, 377, 389, 427, 495
SfaNI	GCATC	1 cut(s)	278
SfcI	CTRYAG	1 cut(s)	475
Sse9I	AATT	5 cut(s)	25, 55, 147, 178, 395
SspMI	CTAG	1 cut(s)	81
StyI	CCWWGG	3 cut(s)	340, 421, 459
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	2 cut(s)	203, 348
TasI	AATT	5 cut(s)	25, 55, 147, 178, 395
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	165, 345
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	413, 480, 483
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	5 cut(s)	18, 92, 185, 235, 456
TspRI	CASTG	1 cut(s)	372
XapI	RAATTY	1 cut(s)	178
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.