Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Forward (+)

29999413 .. 30000538

Gene Structure 1126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG260400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGTGGAAAAAGAAAACAAACCAGCCCAGTCGGAAGCCCTTTGTCCGGTGGGAATGTATCAGATGGTGGTTCCAAAGAGCAAGACAGGTTCCTTCCCATTGCTAATGTGAGCCGGATCATGAAGAAGTCCCTCCCTGCAAATGCCAAGATTTCAAAGGAAGCCAAGGAAACCGTCCAAGAATGCGTCTCTGAGTTCATAAGCTTCATCACCGGGGAGGCCTCGGACAAGTGCCAACGAGAGAAGAGGAAGACTATCAATGGCGATGATCTTCTTTGGGCCATGACAACCCTTGGTTTTGAGAATTATGTTGGACCCTTGAAGGGCTATCTCAACAAGTATAGGGAGACCGAGGGAGAGAAGAACTCCATGCCTAGAGGACAAGAAGATCACAACCACTCATCTAATGATGGTCATCACATCAACAACAACAACCAAGTCCATAATGGTACTAATGAGATCAACACAGTAGGAATTAATAAGGTGGATTTTTTCAATAATGGTGGGTTTTATTCACCTGGGGGGCAACAGATGAGTGCTCCAAAAGGGTTTGGAGAGAGTGGAAGGGTTATTGGTTATGGAGATCAGACTCTGGTGGCTTATGGGGATGGAAATGCAAATCATCTTCACAATGGGATAGGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031326 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051510 GO:0051512 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

215

Amino Acids

23.41

Weight (kDa)

7.06

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	31 - 95	4.7e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	125
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	47, 323
AgsI	TTSAA	3 cut(s)	156, 322, 496
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	2 cut(s)	193, 341
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	592
AoxI	GGCC	2 cut(s)	219, 279
AseI	ATTAAT	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	279, 314
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	202, 507
AvaII	GGWCC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	541
BccI	CCATC	4 cut(s)	59, 404, 602, 636
BciT130I	CCWGG	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	193, 341
BfaI	CTAG	1 cut(s)	375
Bme1390I	CCNGG	2 cut(s)	214, 519
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	279, 314
BmiI	GGNNCC	3 cut(s)	73, 92, 316
BmrFI	CCNGG	2 cut(s)	214, 519
BmrI	ACTGGG	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpuMI	CCSGG	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	6 cut(s)	165, 213, 222, 292, 351, 518
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 323
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	6 cut(s)	165, 213, 222, 292, 351, 518
BseGI	GGATG	2 cut(s)	613, 647
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	47, 323
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	221, 281
BsiHKAI	GWGCWC	1 cut(s)	541
BsiSI	CCGG	3 cut(s)	48, 115, 213
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	47, 323
BsmAI	GTCTC	2 cut(s)	193, 341
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	221, 281
Bso31I	GGTCTC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	5 cut(s)	117, 268, 388, 459, 583
BspANI	GGCC	2 cut(s)	221, 281
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	73, 92, 316
BspPI	GGATC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	6 cut(s)	165, 213, 222, 292, 351, 518
BssMI	GATC	5 cut(s)	117, 268, 388, 459, 583
BssT1I	CCWWGG	2 cut(s)	165, 292
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	175, 469
Bst6I	CTCTTC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	613, 647
BstKTI	GATC	5 cut(s)	120, 271, 391, 462, 586
BstMAI	GTCTC	2 cut(s)	193, 341
BstMBI	GATC	5 cut(s)	117, 268, 388, 459, 583
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	2 cut(s)	212, 517
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	221, 281
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	613, 647
CaiI	CAGNNNCTG	1 cut(s)	592
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	279, 314
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	450
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	3 cut(s)	121, 283, 370
CviJI	RGCY	9 cut(s)	27, 39, 114, 164, 204, 221, 281, 327, 599
CviKI_1	RGCY	9 cut(s)	27, 39, 114, 164, 204, 221, 281, 327, 599
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	5 cut(s)	119, 270, 390, 461, 585
DpnII	GATC	5 cut(s)	117, 268, 388, 459, 583
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	165, 292
Eco147I	AGGCCT	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	165, 292
ErhI	CCWWGG	2 cut(s)	165, 292
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	3 cut(s)	124, 286, 373
FaiI	YATR	9 cut(s)	122, 200, 284, 309, 342, 371, 444, 579, 603
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	3 cut(s)	120, 282, 369
FokI	GGATG	1 cut(s)	620
FspBI	CTAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	221, 281
HapII	CCGG	3 cut(s)	48, 115, 213
HgaI	GACGC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	124, 286, 373
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	1 cut(s)	589
HpaII	CCGG	3 cut(s)	48, 115, 213
HphI	GGTGA	2 cut(s)	202, 507
Hpy188I	TCNGA	5 cut(s)	35, 64, 193, 226, 588
Hpy188III	TCNNGA	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	104, 316, 558
HpyCH4III	ACNGT	2 cut(s)	175, 469
HpyCH4V	TGCA	2 cut(s)	140, 617
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	124, 286, 373
Kzo9I	GATC	5 cut(s)	117, 268, 388, 459, 583
LmnI	GCTCC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	375
MalI	GATC	5 cut(s)	119, 270, 390, 461, 585
MboI	GATC	5 cut(s)	117, 268, 388, 459, 583
MboII	GAAGA	7 cut(s)	136, 256, 262, 263, 373, 398, 617
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	2 cut(s)	304, 474
MlyI	GAGTC	1 cut(s)	583
MmeI	TCCRAC	2 cut(s)	13, 292
MnlI	CCTC	6 cut(s)	143, 211, 232, 240, 346, 371
MseI	TTAA	1 cut(s)	477
MspI	CCGG	3 cut(s)	48, 115, 213
MspR9I	CCNGG	2 cut(s)	214, 519
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	519
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	5 cut(s)	117, 268, 388, 459, 583
NlaIII	CATG	3 cut(s)	124, 286, 373
NlaIV	GGNNCC	3 cut(s)	73, 92, 316
PagI	TCATGA	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	221
PctI	GAATGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
PshBI	ATTAAT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	3 cut(s)	73, 92, 316
PspPI	GGNCC	2 cut(s)	279, 314
PstNI	CAGNNNCTG	1 cut(s)	592
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	477
Sau3AI	GATC	5 cut(s)	117, 268, 388, 459, 583
Sau96I	GGNCC	2 cut(s)	279, 314
SchI	GAGTC	1 cut(s)	583
ScrFI	CCNGG	2 cut(s)	214, 519
SduI	GDGCHC	1 cut(s)	541
SetI	ASST	4 cut(s)	92, 206, 486, 520
SinI	GGWCC	1 cut(s)	314
Sse9I	AATT	2 cut(s)	304, 474
SseBI	AGGCCT	1 cut(s)	221
SspMI	CTAG	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	212, 517
StyI	CCWWGG	2 cut(s)	165, 292
TaaI	ACNGT	2 cut(s)	175, 469
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	2 cut(s)	304, 474
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TspDTI	ATGAA	3 cut(s)	137, 187, 196
VpaK11BI	GGWCC	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.