Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Reverse (-)

21739000 .. 21739766

Gene Structure 767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTCGACAACAGTGGTGGAAGTGTTCCCAATAACTGTGATCATGGTCAGGGAGATATAAACTCGACCGAGCAGCCAGACCCCGGCCAGTTGCTTCCCATAGCCAACGTTGGGAGGATGATGAAGCAAATCCTGCCGCCGAACGCCAAGATCTCAAAGGAAGCCAAGCAAACGATGCAAGAGTGCGTCTCCGAGTTCATCAGCTTCGTCACCGGAGAGGCTTCCGACAAGTGCCGGAAGGAGAGAAGGAAGACGGTGAACGGCGACGACATCTGCTGCGCCCTGGGAACCCTAGGATTCGATGACTACGCTGCCCTTCTGAGGAGGTATCTGCACAGGTATAGAGATCAAGAAGGAGCTGAGCACAGAGCTAATATTGGTAACAATAATAATGAAGACGAGCTGAAGCTGCTGGCTAACAACATCTTGAGCACTGCTCAAGAACAAAGAATCATCATGATCATGAACCAATACGATCATCCTGATCATCATGATATCCAGAAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001067 GO:0001654 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0007423 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010720 GO:0010941 GO:0016070 GO:0016602 GO:0018130 GO:0019216 GO:0019218 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0022008 GO:0022603 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043408 GO:0043410 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0044877 GO:0045540 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045676 GO:0045678 GO:0045893 GO:0045935 GO:0045937 GO:0046483 GO:0046532 GO:0046534 GO:0046890 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048699 GO:0048731 GO:0048749 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050810 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0060548 GO:0062012 GO:0065007 GO:0070013 GO:0070491 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090181 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0106118 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1990823 GO:1990830 GO:1990837 GO:2000026 GO:2000027 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

170

Amino Acids

18.97

Weight (kDa)

5.48

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	31 - 95	3.9e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	32 - 95	1.5e-25	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	1 cut(s)	137
AclI	AACGTT	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	425
AfiI	CCNNNNNNNGG	3 cut(s)	83, 111, 321
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	5 cut(s)	204, 359, 371, 403, 409
AluI	AGCT	5 cut(s)	204, 359, 371, 403, 409
Alw21I	GWGCWC	2 cut(s)	366, 434
Alw26I	GTCTC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	4 cut(s)	73, 276, 311, 409
AspA2I	CCTAGG	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	202, 268
AvrII	CCTAGG	1 cut(s)	292
BbsI	GAAGAC	2 cut(s)	257, 402
Bbv12I	GWGCWC	2 cut(s)	366, 434
BbvI	GCAGC	4 cut(s)	85, 263, 298, 396
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	3 cut(s)	40, 459, 484
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	1 cut(s)	293
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	5 cut(s)	74, 137, 277, 312, 410
BlnI	CCTAGG	1 cut(s)	292
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	5 cut(s)	75, 138, 278, 313, 411
Bme1390I	CCNGG	2 cut(s)	84, 284
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	84, 284
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	2 cut(s)	257, 402
BplI	GAGNNNNNCTC	4 cut(s)	173, 205, 421, 453
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	423, 448
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	82, 282, 283, 292
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 111, 321
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	4 cut(s)	82, 282, 283, 292
BseGI	GGATG	2 cut(s)	123, 478
BseLI	CCNNNNNNNGG	3 cut(s)	83, 111, 321
BseMII	CTCAG	2 cut(s)	311, 351
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	337
BseXI	GCAGC	4 cut(s)	85, 263, 298, 396
BsgI	GTGCAG	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	366, 434
BsiSI	CCGG	3 cut(s)	84, 213, 235
BslI	CCNNNNNNNGG	3 cut(s)	83, 111, 321
BsmAI	GTCTC	1 cut(s)	193
BsmBI	CGTCTC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	366, 434
Bsp143I	GATC	6 cut(s)	40, 150, 346, 459, 475, 484
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	2 cut(s)	312, 352
BspHI	TCATGA	3 cut(s)	456, 462, 490
BspLI	GGNNCC	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	4 cut(s)	82, 282, 283, 292
BssMI	GATC	6 cut(s)	40, 150, 346, 459, 475, 484
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	14, 38, 256
BstAPI	GCANNNNNTGC	2 cut(s)	133, 175
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	2 cut(s)	320, 360
BstF5I	GGATG	2 cut(s)	123, 478
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	6 cut(s)	43, 153, 349, 462, 478, 487
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	6 cut(s)	40, 150, 346, 459, 475, 484
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 175, 409
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	82, 282
BstV1I	GCAGC	4 cut(s)	85, 263, 298, 396
BstV2I	GAAGAC	2 cut(s)	257, 402
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	123, 478
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	19, 432
Cac8I	GCNNGC	1 cut(s)	414
CciI	TCATGA	3 cut(s)	456, 462, 490
CfoI	GCGC	1 cut(s)	281
CseI	GACGC	1 cut(s)	175
CspCI	CAANNNNNGTGG	1 cut(s)	33
CviAII	CATG	4 cut(s)	44, 457, 463, 491
DdeI	CTNAG	2 cut(s)	320, 360
DpnI	GATC	6 cut(s)	42, 152, 348, 461, 477, 486
DpnII	GATC	6 cut(s)	40, 150, 346, 459, 475, 484
EaeI	YGGCCR	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	4 cut(s)	47, 460, 466, 494
FaiI	YATR	7 cut(s)	45, 59, 101, 342, 458, 464, 492
FatI	CATG	4 cut(s)	43, 456, 462, 490
FbaI	TGATCA	3 cut(s)	40, 459, 484
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	5 cut(s)	74, 137, 277, 312, 410
FokI	GGATG	2 cut(s)	130, 465
Fsp4HI	GCNGC	5 cut(s)	74, 137, 277, 312, 410
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	5 cut(s)	74, 137, 277, 312, 410
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	3 cut(s)	84, 213, 235
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	4 cut(s)	47, 460, 466, 494
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	297, 450
HpaII	CCGG	3 cut(s)	84, 213, 235
HphI	GGTGA	2 cut(s)	202, 268
Hpy166II	GTNNAC	2 cut(s)	7, 259
Hpy188I	TCNGA	3 cut(s)	193, 226, 321
Hpy188III	TCNNGA	8 cut(s)	350, 427, 440, 457, 463, 482, 491, 499
Hpy8I	GTNNAC	2 cut(s)	7, 259
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	4 cut(s)	232, 240, 326, 347
HpyCH4III	ACNGT	3 cut(s)	14, 38, 256
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	178, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 175, 409
HpyF3I	CTNAG	2 cut(s)	320, 360
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	47, 460, 466, 494
HspAI	GCGC	1 cut(s)	279
Ksp22I	TGATCA	3 cut(s)	40, 459, 484
Kzo9I	GATC	6 cut(s)	40, 150, 346, 459, 475, 484
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	4 cut(s)	85, 263, 298, 396
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	208, 380
MalI	GATC	6 cut(s)	42, 152, 348, 461, 477, 486
MboI	GATC	6 cut(s)	40, 150, 346, 459, 475, 484
MboII	GAAGA	2 cut(s)	262, 407
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	366, 434
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	4 cut(s)	108, 211, 315, 318
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	3 cut(s)	84, 213, 235
MspR9I	CCNGG	2 cut(s)	84, 284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	133, 175, 409
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	6 cut(s)	40, 150, 346, 459, 475, 484
NlaIII	CATG	4 cut(s)	47, 460, 466, 494
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	208
PagI	TCATGA	3 cut(s)	456, 462, 490
PasI	CCCWGGG	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	297, 450
PkrI	GCNGC	5 cut(s)	75, 138, 278, 313, 411
Psp1406I	AACGTT	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	461
SalI	GTCGAC	1 cut(s)	5
SatI	GCNGC	5 cut(s)	74, 137, 277, 312, 410
Sau3AI	GATC	6 cut(s)	40, 150, 346, 459, 475, 484
ScrFI	CCNGG	2 cut(s)	84, 284
SduI	GDGCHC	2 cut(s)	366, 434
SetI	ASST	9 cut(s)	111, 206, 329, 341, 361, 373, 405, 411, 509
SfaNI	GCATC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	2 cut(s)	427, 438
SmoI	CTYRAG	2 cut(s)	427, 438
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	82, 282
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	3 cut(s)	14, 38, 256
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	6, 65, 300
TaqII	GACCGA	1 cut(s)	83
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	297, 450
TscAI	CASTG	2 cut(s)	19, 439
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	4 cut(s)	73, 276, 311, 409
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	4 cut(s)	137, 187, 408, 479
TspRI	CASTG	2 cut(s)	19, 439
XmaJI	CCTAGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.