protein heterodimerization activity
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47810 |
| fragaria_vesca | FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060 |
| malus_domestica | MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1 |
| prunus_persica | Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1 |
| pyrus_communis | pycom03g22470 pycom15g29130 |
| rosa_chinensis | RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241 |
| rosa_laevigata | RLG00000007656 RLG00000011965 RLG00000018246 |
| rosa_multiflora | Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029 |
| rosa_roxburghii | Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320 |
| rosa_rugosa | Rorug02G0204700 Rorug04G0175200 Rorug06G0233700 |
| rosa_samantha | Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000 |
| rosa_wichuraiana | Rw2G020410 Rw4G019980 Rw6G030170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1203 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 577, 1322 |
| Acc16I | TGCGCA | 1 cut(s) | 280 |
| AccB1I | GGYRCC | 2 cut(s) | 386, 1310 |
| AccI | GTMKAC | 1 cut(s) | 1419 |
| AccII | CGCG | 1 cut(s) | 507 |
| AccIII | TCCGGA | 1 cut(s) | 239 |
| AciI | CCGC | 7 cut(s) | 155, 469, 507, 900, 1481, 1491, 1574 |
| AclWI | GGATC | 3 cut(s) | 1017, 1030, 1596 |
| AcoI | YGGCCR | 1 cut(s) | 897 |
| AcsI | RAATTY | 3 cut(s) | 162, 224, 1756 |
| AfaI | GTAC | 4 cut(s) | 1042, 1048, 1739, 1751 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 506, 906, 1490, 1491, 1594, 1712, 1785, 1886 |
| AgsI | TTSAA | 3 cut(s) | 139, 673, 1554 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 814 |
| AhlI | ACTAGT | 1 cut(s) | 1043 |
| AjiI | CACGTC | 1 cut(s) | 888 |
| AjnI | CCWGG | 3 cut(s) | 499, 608, 1353 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 912, 944, 1370, 1402 |
| AleI | CACNNNNGTG | 1 cut(s) | 1889 |
| Alw21I | GWGCWC | 1 cut(s) | 442 |
| Alw26I | GTCTC | 5 cut(s) | 778, 801, 1607, 1621, 1707 |
| AlwI | GGATC | 3 cut(s) | 1017, 1030, 1596 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 950 |
| Ama87I | CYCGRG | 3 cut(s) | 435, 656, 804 |
| Aor13HI | TCCGGA | 1 cut(s) | 239 |
| AoxI | GGCC | 3 cut(s) | 897, 1273, 1519 |
| ApeKI | GCWGC | 8 cut(s) | 70, 620, 765, 1012, 1220, 1527, 1577, 1876 |
| ApoI | RAATTY | 3 cut(s) | 162, 224, 1756 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1311, 1343, 1412, 1444 |
| AspLEI | GCGC | 1 cut(s) | 281 |
| AspS9I | GGNCC | 3 cut(s) | 403, 892, 1274 |
| AsuC2I | CCSGG | 2 cut(s) | 896, 1595 |
| AsuHPI | GGTGA | 5 cut(s) | 284, 1004, 1151, 1241, 1609 |
| AsuNHI | GCTAGC | 1 cut(s) | 98 |
| AvaI | CYCGRG | 3 cut(s) | 435, 656, 804 |
| AvaII | GGWCC | 2 cut(s) | 403, 892 |
| AxyI | CCTNAGG | 1 cut(s) | 1780 |
| BamHI | GGATCC | 1 cut(s) | 1022 |
| BanI | GGYRCC | 2 cut(s) | 386, 1310 |
| BanII | GRGCYC | 2 cut(s) | 442, 1497 |
| BauI | CACGAG | 1 cut(s) | 1245 |
| BbsI | GAAGAC | 2 cut(s) | 862, 1441 |
| Bbv12I | GWGCWC | 1 cut(s) | 442 |
| BbvI | GCAGC | 8 cut(s) | 82, 632, 777, 999, 1207, 1539, 1589, 1863 |
| BccI | CCATC | 5 cut(s) | 959, 1136, 1181, 1226, 1349 |
| BceAI | ACGGC | 2 cut(s) | 717, 1427 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 785, 819, 1642, 1676 |
| BciT130I | CCWGG | 3 cut(s) | 501, 610, 1355 |
| BclI | TGATCA | 1 cut(s) | 361 |
| BcnI | CCSGG | 2 cut(s) | 896, 1595 |
| BcoDI | GTCTC | 5 cut(s) | 778, 801, 1607, 1621, 1707 |
| BcuI | ACTAGT | 1 cut(s) | 1043 |
| BfaI | CTAG | 9 cut(s) | 95, 99, 231, 380, 647, 737, 783, 917, 1044 |
| BfmI | CTRYAG | 1 cut(s) | 543 |
| BglII | AGATCT | 1 cut(s) | 1058 |
| BlpI | GCTNAGC | 1 cut(s) | 426 |
| BmcAI | AGTACT | 1 cut(s) | 1048 |
| Bme1390I | CCNGG | 5 cut(s) | 501, 610, 896, 1355, 1595 |
| Bme18I | GGWCC | 2 cut(s) | 403, 892 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 814 |
| BmeT110I | CYCGRG | 3 cut(s) | 435, 656, 804 |
| BmgBI | CACGTC | 1 cut(s) | 888 |
| BmgT120I | GGNCC | 3 cut(s) | 403, 892, 1274 |
| BmiI | GGNNCC | 6 cut(s) | 388, 893, 894, 1024, 1312, 1414 |
| BmrFI | CCNGG | 5 cut(s) | 501, 610, 896, 1355, 1595 |
| BmrI | ACTGGG | 2 cut(s) | 1059, 1896 |
| BmsI | GCATC | 6 cut(s) | 529, 875, 937, 1258, 1589, 1820 |
| BmtI | GCTAGC | 1 cut(s) | 102 |
| BmuI | ACTGGG | 2 cut(s) | 1059, 1896 |
| BoxI | GACNNNNGTC | 1 cut(s) | 890 |
| BpiI | GAAGAC | 2 cut(s) | 862, 1441 |
| BpmI | CTGGAG | 1 cut(s) | 1471 |
| Bpu10I | CCTNAGC | 1 cut(s) | 960 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 426 |
| BpuEI | CTTGAG | 5 cut(s) | 160, 545, 1481, 1500, 1812 |
| BpuMI | CCSGG | 2 cut(s) | 896, 1595 |
| BsaAI | YACGTR | 1 cut(s) | 1072 |
| BsaI | GGTCTC | 2 cut(s) | 1621, 1707 |
| BsaJI | CCNNGG | 6 cut(s) | 499, 756, 1026, 1443, 1631, 1706 |
| BsaWI | WCCGGW | 1 cut(s) | 239 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1358, 1388 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 506, 906, 1490, 1491, 1594, 1712, 1785, 1886 |
| Bse118I | RCCGGY | 1 cut(s) | 1271 |
| Bse1I | ACTGG | 3 cut(s) | 397, 1054, 1891 |
| Bse21I | CCTNAGG | 1 cut(s) | 1780 |
| BseAI | TCCGGA | 1 cut(s) | 239 |
| BseBI | CCWGG | 3 cut(s) | 501, 610, 1355 |
| BseDI | CCNNGG | 6 cut(s) | 499, 756, 1026, 1443, 1631, 1706 |
| BseGI | GGATG | 5 cut(s) | 236, 700, 970, 1464, 1681 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 506, 906, 1490, 1491, 1594, 1712, 1785, 1886 |
| BseMII | CTCAG | 7 cut(s) | 440, 704, 804, 974, 1194, 1452, 1794 |
| BseNI | ACTGG | 3 cut(s) | 397, 1054, 1891 |
| BseRI | GAGGAG | 6 cut(s) | 308, 313, 316, 319, 322, 325 |
| BseX3I | CGGCCG | 1 cut(s) | 897 |
| BseXI | GCAGC | 8 cut(s) | 82, 632, 777, 999, 1207, 1539, 1589, 1863 |
| BseYI | CCCAGC | 1 cut(s) | 1079 |
| BsgI | GTGCAG | 1 cut(s) | 639 |
| Bsh1236I | CGCG | 1 cut(s) | 507 |
| Bsh1285I | CGRYCG | 1 cut(s) | 900 |
| BshFI | GGCC | 3 cut(s) | 899, 1275, 1521 |
| BshNI | GGYRCC | 2 cut(s) | 386, 1310 |
| BsiEI | CGRYCG | 1 cut(s) | 900 |
| BsiHKAI | GWGCWC | 1 cut(s) | 442 |
| BsiHKCI | CYCGRG | 3 cut(s) | 435, 656, 804 |
| BsiSI | CCGG | 4 cut(s) | 240, 896, 1272, 1595 |
| BslFI | GGGAC | 3 cut(s) | 878, 988, 1096 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 506, 906, 1490, 1491, 1594, 1712, 1785, 1886 |
| BsmAI | GTCTC | 5 cut(s) | 778, 801, 1607, 1621, 1707 |
| BsmBI | CGTCTC | 1 cut(s) | 1607 |
| BsmFI | GGGAC | 3 cut(s) | 878, 988, 1096 |
| BsmI | GAATGC | 1 cut(s) | 1838 |
| BsnI | GGCC | 3 cut(s) | 899, 1275, 1521 |
| Bso31I | GGTCTC | 2 cut(s) | 1621, 1707 |
| BsoBI | CYCGRG | 3 cut(s) | 435, 656, 804 |
| Bsp1286I | GDGCHC | 2 cut(s) | 442, 1497 |
| Bsp13I | TCCGGA | 1 cut(s) | 239 |
| Bsp143I | GATC | 8 cut(s) | 233, 361, 481, 1022, 1058, 1158, 1601, 1653 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 426 |
| Bsp19I | CCATGG | 1 cut(s) | 756 |
| BspACI | CCGC | 7 cut(s) | 155, 469, 507, 900, 1481, 1491, 1574 |
| BspANI | GGCC | 3 cut(s) | 899, 1275, 1521 |
| BspCNI | CTCAG | 7 cut(s) | 439, 705, 805, 973, 1193, 1451, 1793 |
| BspEI | TCCGGA | 1 cut(s) | 239 |
| BspFNI | CGCG | 1 cut(s) | 507 |
| BspHI | TCATGA | 2 cut(s) | 484, 564 |
| BspLI | GGNNCC | 6 cut(s) | 388, 893, 894, 1024, 1312, 1414 |
| BspOI | GCTAGC | 1 cut(s) | 102 |
| BspPI | GGATC | 3 cut(s) | 1017, 1030, 1596 |
| BspT107I | GGYRCC | 2 cut(s) | 386, 1310 |
| BspTNI | GGTCTC | 2 cut(s) | 1621, 1707 |
| BsrFI | RCCGGY | 1 cut(s) | 1271 |
| BsrI | ACTGG | 3 cut(s) | 397, 1054, 1891 |
| BssAI | RCCGGY | 1 cut(s) | 1271 |
| BssECI | CCNNGG | 6 cut(s) | 499, 756, 1026, 1443, 1631, 1706 |
| BssMI | GATC | 8 cut(s) | 233, 361, 481, 1022, 1058, 1158, 1601, 1653 |
| BssSI | CACGAG | 1 cut(s) | 1245 |
| BssT1I | CCWWGG | 3 cut(s) | 756, 1026, 1706 |
| Bst2BI | CACGAG | 1 cut(s) | 1245 |
| Bst2UI | CCWGG | 3 cut(s) | 501, 610, 1355 |
| Bst4CI | ACNGT | 8 cut(s) | 415, 875, 1216, 1386, 1417, 1565, 1632, 1846 |
| Bst6I | CTCTTC | 1 cut(s) | 1595 |
| BstBAI | YACGTR | 1 cut(s) | 1072 |
| BstC8I | GCNNGC | 4 cut(s) | 100, 432, 1273, 1493 |
| BstDEI | CTNAG | 8 cut(s) | 426, 614, 713, 813, 960, 1180, 1438, 1780 |
| BstDSI | CCRYGG | 3 cut(s) | 756, 1443, 1631 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1783 |
| BstF5I | GGATG | 5 cut(s) | 236, 700, 970, 1464, 1681 |
| BstFNI | CGCG | 1 cut(s) | 507 |
| BstHHI | GCGC | 1 cut(s) | 281 |
| BstKTI | GATC | 8 cut(s) | 236, 364, 484, 1025, 1061, 1161, 1604, 1656 |
| BstMAI | GTCTC | 5 cut(s) | 778, 801, 1607, 1621, 1707 |
| BstMBI | GATC | 8 cut(s) | 233, 361, 481, 1022, 1058, 1158, 1601, 1653 |
| BstMCI | CGRYCG | 1 cut(s) | 900 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 58, 67, 104, 431, 839, 956, 1217, 1527 |
| BstNI | CCWGG | 3 cut(s) | 501, 610, 1355 |
| BstNSI | RCATGY | 1 cut(s) | 136 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 890 |
| BstSCI | CCNGG | 5 cut(s) | 499, 608, 894, 1353, 1593 |
| BstSFI | CTRYAG | 1 cut(s) | 543 |
| BstSNI | TACGTA | 1 cut(s) | 1072 |
| BstUI | CGCG | 1 cut(s) | 507 |
| BstV1I | GCAGC | 8 cut(s) | 82, 632, 777, 999, 1207, 1539, 1589, 1863 |
| BstV2I | GAAGAC | 2 cut(s) | 862, 1441 |
| BstX2I | RGATCY | 3 cut(s) | 1022, 1058, 1601 |
| BstYI | RGATCY | 3 cut(s) | 1022, 1058, 1601 |
| BstZI | CGGCCG | 1 cut(s) | 897 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1780 |
| BsuRI | GGCC | 3 cut(s) | 899, 1275, 1521 |
| BtgI | CCRYGG | 3 cut(s) | 756, 1443, 1631 |
| BtgZI | GCGATG | 1 cut(s) | 1225 |
| BtrI | CACGTC | 1 cut(s) | 888 |
| BtsCI | GGATG | 5 cut(s) | 236, 700, 970, 1464, 1681 |
| BtsI | GCAGTG | 2 cut(s) | 775, 1005 |
| BtsIMutI | CAGTG | 4 cut(s) | 775, 810, 1005, 1884 |
| Cac8I | GCNNGC | 4 cut(s) | 100, 432, 1273, 1493 |
| CaiI | CAGNNNCTG | 1 cut(s) | 950 |
| CciI | TCATGA | 2 cut(s) | 484, 564 |
| CfoI | GCGC | 1 cut(s) | 281 |
| Cfr10I | RCCGGY | 1 cut(s) | 1271 |
| Cfr13I | GGNCC | 3 cut(s) | 403, 892, 1274 |
| CseI | GACGC | 1 cut(s) | 985 |
| Csp6I | GTAC | 4 cut(s) | 1041, 1047, 1738, 1750 |
| CviAII | CATG | 8 cut(s) | 133, 485, 565, 757, 1660, 1672, 1753, 1808 |
| CviQI | GTAC | 4 cut(s) | 1041, 1047, 1738, 1750 |
| DdeI | CTNAG | 8 cut(s) | 426, 614, 713, 813, 960, 1180, 1438, 1780 |
| DpnI | GATC | 8 cut(s) | 235, 363, 483, 1024, 1060, 1160, 1603, 1655 |
| DpnII | GATC | 8 cut(s) | 233, 361, 481, 1022, 1058, 1158, 1601, 1653 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 577, 1322 |
| DriI | GACNNNNNGTC | 1 cut(s) | 814 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 577, 1322 |
| EaeI | YGGCCR | 1 cut(s) | 897 |
| EagI | CGGCCG | 1 cut(s) | 897 |
| Eam1104I | CTCTTC | 1 cut(s) | 1595 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 814 |
| EarI | CTCTTC | 1 cut(s) | 1595 |
| Ecl136II | GAGCTC | 1 cut(s) | 440 |
| EclXI | CGGCCG | 1 cut(s) | 897 |
| Eco105I | TACGTA | 1 cut(s) | 1072 |
| Eco130I | CCWWGG | 3 cut(s) | 756, 1026, 1706 |
| Eco24I | GRGCYC | 2 cut(s) | 442, 1497 |
| Eco31I | GGTCTC | 2 cut(s) | 1621, 1707 |
| Eco32I | GATATC | 1 cut(s) | 1805 |
| Eco47I | GGWCC | 2 cut(s) | 403, 892 |
| Eco52I | CGGCCG | 1 cut(s) | 897 |
| Eco53kI | GAGCTC | 1 cut(s) | 440 |
| Eco81I | CCTNAGG | 1 cut(s) | 1780 |
| Eco88I | CYCGRG | 3 cut(s) | 435, 656, 804 |
| EcoICRI | GAGCTC | 1 cut(s) | 440 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1783 |
| EcoO109I | RGGNCCY | 1 cut(s) | 892 |
| EcoRI | GAATTC | 1 cut(s) | 1756 |
| EcoRII | CCWGG | 3 cut(s) | 499, 608, 1353 |
| EcoRV | GATATC | 1 cut(s) | 1805 |
| EcoT14I | CCWWGG | 3 cut(s) | 756, 1026, 1706 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 1813 |
| EcoT38I | GRGCYC | 2 cut(s) | 442, 1497 |
| ErhI | CCWWGG | 3 cut(s) | 756, 1026, 1706 |
| Esp3I | CGTCTC | 1 cut(s) | 1607 |
| FaeI | CATG | 8 cut(s) | 136, 488, 568, 760, 1663, 1675, 1756, 1811 |
| FaqI | GGGAC | 3 cut(s) | 878, 988, 1096 |
| FatI | CATG | 8 cut(s) | 132, 484, 564, 756, 1659, 1671, 1752, 1807 |
| FauI | CCCGC | 1 cut(s) | 1484 |
| FauNDI | CATATG | 1 cut(s) | 6 |
| FbaI | TGATCA | 1 cut(s) | 361 |
| FblI | GTMKAC | 1 cut(s) | 1419 |
| FokI | GGATG | 5 cut(s) | 223, 707, 977, 1451, 1688 |
| FriOI | GRGCYC | 2 cut(s) | 442, 1497 |
| FspBI | CTAG | 9 cut(s) | 95, 99, 231, 380, 647, 737, 783, 917, 1044 |
| FspI | TGCGCA | 1 cut(s) | 280 |
| GlaI | GCGC | 1 cut(s) | 280 |
| GsaI | CCCAGC | 1 cut(s) | 1083 |
| GsuI | CTGGAG | 1 cut(s) | 1471 |
| HaeIII | GGCC | 3 cut(s) | 899, 1275, 1521 |
| HapII | CCGG | 4 cut(s) | 240, 896, 1272, 1595 |
| HgaI | GACGC | 1 cut(s) | 985 |
| HhaI | GCGC | 1 cut(s) | 281 |
| Hin1II | CATG | 8 cut(s) | 136, 488, 568, 760, 1663, 1675, 1756, 1811 |
| Hin6I | GCGC | 1 cut(s) | 279 |
| HinP1I | GCGC | 1 cut(s) | 279 |
| HincII | GTYRAC | 1 cut(s) | 1420 |
| HindII | GTYRAC | 1 cut(s) | 1420 |
| HindIII | AAGCTT | 3 cut(s) | 195, 911, 921 |
| HinfI | GANTC | 5 cut(s) | 308, 815, 1305, 1679, 1867 |
| HpaII | CCGG | 4 cut(s) | 240, 896, 1272, 1595 |
| HphI | GGTGA | 5 cut(s) | 284, 1004, 1151, 1241, 1609 |
| Hpy166II | GTNNAC | 7 cut(s) | 493, 514, 604, 1264, 1330, 1420, 1824 |
| Hpy188I | TCNGA | 8 cut(s) | 361, 714, 793, 871, 885, 1183, 1539, 1585 |
| Hpy8I | GTNNAC | 7 cut(s) | 493, 514, 604, 1264, 1330, 1420, 1824 |
| Hpy99I | CGWCG | 3 cut(s) | 602, 889, 1421 |
| HpyAV | CCTTC | 7 cut(s) | 213, 377, 787, 997, 1287, 1779, 1890 |
| HpyCH4III | ACNGT | 8 cut(s) | 415, 875, 1216, 1386, 1417, 1565, 1632, 1846 |
| HpyCH4IV | ACGT | 6 cut(s) | 600, 887, 1071, 1125, 1616, 1820 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 620, 842, 1461, 1663, 1724, 1811 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 58, 67, 104, 431, 839, 956, 1217, 1527 |
| HpyF3I | CTNAG | 8 cut(s) | 426, 614, 713, 813, 960, 1180, 1438, 1780 |
| HpySE526I | ACGT | 6 cut(s) | 600, 887, 1071, 1125, 1616, 1820 |
| Hsp92II | CATG | 8 cut(s) | 136, 488, 568, 760, 1663, 1675, 1756, 1811 |
| HspAI | GCGC | 1 cut(s) | 279 |
| KflI | GGGWCCC | 1 cut(s) | 892 |
| Kpn2I | TCCGGA | 1 cut(s) | 239 |
| KroI | GCCGGC | 1 cut(s) | 1271 |
| KroNI | GCCGGC | 1 cut(s) | 1273 |
| Ksp22I | TGATCA | 1 cut(s) | 361 |
| Kzo9I | GATC | 8 cut(s) | 233, 361, 481, 1022, 1058, 1158, 1601, 1653 |
| LmnI | GCTCC | 2 cut(s) | 57, 793 |
| Lsp1109I | GCAGC | 8 cut(s) | 82, 632, 777, 999, 1207, 1539, 1589, 1863 |
| LweI | GCATC | 6 cut(s) | 529, 875, 937, 1258, 1589, 1820 |
| MaeI | CTAG | 9 cut(s) | 95, 99, 231, 380, 647, 737, 783, 917, 1044 |
| MaeII | ACGT | 6 cut(s) | 600, 887, 1071, 1125, 1616, 1820 |
| MaeIII | GTNAC | 2 cut(s) | 697, 1507 |
| MalI | GATC | 8 cut(s) | 235, 363, 483, 1024, 1060, 1160, 1603, 1655 |
| MboI | GATC | 8 cut(s) | 233, 361, 481, 1022, 1058, 1158, 1601, 1653 |
| MboII | GAAGA | 5 cut(s) | 163, 867, 1420, 1441, 1582 |
| MflI | RGATCY | 3 cut(s) | 1022, 1058, 1601 |
| MhlI | GDGCHC | 2 cut(s) | 442, 1497 |
| MluCI | AATT | 8 cut(s) | 45, 63, 141, 162, 224, 1017, 1756, 1911 |
| MlyI | GAGTC | 3 cut(s) | 824, 1314, 1673 |
| MmeI | TCCRAC | 1 cut(s) | 908 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 1813 |
| MroI | TCCGGA | 1 cut(s) | 239 |
| MroNI | GCCGGC | 1 cut(s) | 1271 |
| MseI | TTAA | 5 cut(s) | 48, 66, 1728, 1775, 1791 |
| MslI | CAYNNNNRTG | 2 cut(s) | 131, 1889 |
| MspA1I | CMGCKG | 1 cut(s) | 1491 |
| MspI | CCGG | 4 cut(s) | 240, 896, 1272, 1595 |
| MspR9I | CCNGG | 5 cut(s) | 501, 610, 896, 1355, 1595 |
| Mva1269I | GAATGC | 1 cut(s) | 1838 |
| MvaI | CCWGG | 3 cut(s) | 501, 610, 1355 |
| MvnI | CGCG | 1 cut(s) | 507 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 58, 67, 104, 431, 839, 956, 1217, 1527 |
| NaeI | GCCGGC | 1 cut(s) | 1273 |
| NciI | CCSGG | 2 cut(s) | 896, 1595 |
| NcoI | CCATGG | 1 cut(s) | 756 |
| NdeI | CATATG | 1 cut(s) | 6 |
| NdeII | GATC | 8 cut(s) | 233, 361, 481, 1022, 1058, 1158, 1601, 1653 |
| NgoMIV | GCCGGC | 1 cut(s) | 1271 |
| NheI | GCTAGC | 1 cut(s) | 98 |
| NlaIII | CATG | 8 cut(s) | 136, 488, 568, 760, 1663, 1675, 1756, 1811 |
| NlaIV | GGNNCC | 6 cut(s) | 388, 893, 894, 1024, 1312, 1414 |
| NmuCI | GTSAC | 2 cut(s) | 697, 1507 |
| NsbI | TGCGCA | 1 cut(s) | 280 |
| NsiI | ATGCAT | 2 cut(s) | 6, 1813 |
| NspI | RCATGY | 1 cut(s) | 136 |
| OliI | CACNNNNGTG | 1 cut(s) | 1889 |
| PaeR7I | CTCGAG | 3 cut(s) | 435, 656, 804 |
| PagI | TCATGA | 2 cut(s) | 484, 564 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 597 |
| PctI | GAATGC | 1 cut(s) | 1838 |
| PdiI | GCCGGC | 1 cut(s) | 1273 |
| PfeI | GAWTC | 2 cut(s) | 308, 1867 |
| PflFI | GACNNNGTC | 1 cut(s) | 560 |
| PleI | GAGTC | 3 cut(s) | 823, 1313, 1673 |
| PpsI | GAGTC | 3 cut(s) | 823, 1313, 1673 |
| Ppu21I | YACGTR | 1 cut(s) | 1072 |
| PpuMI | RGGWCCY | 1 cut(s) | 892 |
| PshAI | GACNNNNGTC | 1 cut(s) | 890 |
| PsiI | TTATAA | 1 cut(s) | 1203 |
| Psp124BI | GAGCTC | 1 cut(s) | 442 |
| Psp5II | RGGWCCY | 1 cut(s) | 892 |
| Psp6I | CCWGG | 3 cut(s) | 499, 608, 1353 |
| PspFI | CCCAGC | 1 cut(s) | 1079 |
| PspGI | CCWGG | 3 cut(s) | 499, 608, 1353 |
| PspN4I | GGNNCC | 6 cut(s) | 388, 893, 894, 1024, 1312, 1414 |
| PspPI | GGNCC | 3 cut(s) | 403, 892, 1274 |
| PspPPI | RGGWCCY | 1 cut(s) | 892 |
| PspXI | VCTCGAGB | 1 cut(s) | 435 |
| PstNI | CAGNNNCTG | 1 cut(s) | 950 |
| PsuI | RGATCY | 3 cut(s) | 1022, 1058, 1601 |
| PsyI | GACNNNGTC | 1 cut(s) | 560 |
| RsaI | GTAC | 4 cut(s) | 1042, 1048, 1739, 1751 |
| RsaNI | GTAC | 4 cut(s) | 1041, 1047, 1738, 1750 |
| RseI | CAYNNNNRTG | 2 cut(s) | 131, 1889 |
| SacI | GAGCTC | 1 cut(s) | 442 |
| SalI | GTCGAC | 1 cut(s) | 1418 |
| SaqAI | TTAA | 5 cut(s) | 48, 66, 1728, 1775, 1791 |
| Sau3AI | GATC | 8 cut(s) | 233, 361, 481, 1022, 1058, 1158, 1601, 1653 |
| Sau96I | GGNCC | 3 cut(s) | 403, 892, 1274 |
| ScaI | AGTACT | 1 cut(s) | 1048 |
| SchI | GAGTC | 3 cut(s) | 824, 1314, 1673 |
| ScrFI | CCNGG | 5 cut(s) | 501, 610, 896, 1355, 1595 |
| SduI | GDGCHC | 2 cut(s) | 442, 1497 |
| SfaNI | GCATC | 6 cut(s) | 529, 875, 937, 1258, 1589, 1820 |
| SfcI | CTRYAG | 1 cut(s) | 543 |
| Sfr274I | CTCGAG | 3 cut(s) | 435, 656, 804 |
| SinI | GGWCC | 2 cut(s) | 403, 892 |
| SlaI | CTCGAG | 3 cut(s) | 435, 656, 804 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 131, 1889 |
| SmlI | CTYRAG | 9 cut(s) | 16, 175, 435, 524, 656, 804, 1496, 1515, 1827 |
| SmoI | CTYRAG | 9 cut(s) | 16, 175, 435, 524, 656, 804, 1496, 1515, 1827 |
| SnaBI | TACGTA | 1 cut(s) | 1072 |
| SpeI | ACTAGT | 1 cut(s) | 1043 |
| Sse9I | AATT | 8 cut(s) | 45, 63, 141, 162, 224, 1017, 1756, 1911 |
| SsiI | CCGC | 7 cut(s) | 155, 469, 507, 900, 1481, 1491, 1574 |
| SspMI | CTAG | 9 cut(s) | 95, 99, 231, 380, 647, 737, 783, 917, 1044 |
| SstI | GAGCTC | 1 cut(s) | 442 |
| StyD4I | CCNGG | 5 cut(s) | 499, 608, 894, 1353, 1593 |
| StyI | CCWWGG | 3 cut(s) | 756, 1026, 1706 |
| TaaI | ACNGT | 8 cut(s) | 415, 875, 1216, 1386, 1417, 1565, 1632, 1846 |
| TaiI | ACGT | 6 cut(s) | 603, 890, 1074, 1128, 1619, 1823 |
| TaqII | GACCGA | 1 cut(s) | 391 |
| TasI | AATT | 8 cut(s) | 45, 63, 141, 162, 224, 1017, 1756, 1911 |
| TatI | WGTACW | 3 cut(s) | 1046, 1737, 1749 |
| TauI | GCSGC | 2 cut(s) | 902, 1577 |
| TfiI | GAWTC | 2 cut(s) | 308, 1867 |
| Tru1I | TTAA | 5 cut(s) | 48, 66, 1728, 1775, 1791 |
| Tru9I | TTAA | 5 cut(s) | 48, 66, 1728, 1775, 1791 |
| TscAI | CASTG | 4 cut(s) | 775, 817, 1005, 1891 |
| TseFI | GTSAC | 2 cut(s) | 697, 1507 |
| TseI | GCWGC | 8 cut(s) | 70, 620, 765, 1012, 1220, 1527, 1577, 1876 |
| Tsp45I | GTSAC | 2 cut(s) | 697, 1507 |
| TspDTI | ATGAA | 5 cut(s) | 1228, 1414, 1660, 1769, 1846 |
| TspRI | CASTG | 4 cut(s) | 775, 817, 1005, 1891 |
| Tth111I | GACNNNGTC | 1 cut(s) | 560 |
| VpaK11BI | GGWCC | 2 cut(s) | 403, 892 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1783 |
| XapI | RAATTY | 3 cut(s) | 162, 224, 1756 |
| XbaI | TCTAGA | 3 cut(s) | 230, 646, 916 |
| XceI | RCATGY | 1 cut(s) | 136 |
| XhoI | CTCGAG | 3 cut(s) | 435, 656, 804 |
| XmiI | GTMKAC | 1 cut(s) | 1419 |
| XspI | CTAG | 9 cut(s) | 95, 99, 231, 380, 647, 737, 783, 917, 1044 |
| ZrmI | AGTACT | 1 cut(s) | 1048 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 1813 |