Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Reverse (-)

22586640 .. 22587200

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTTGATAATATAGGAAACAATAATTCATCAGCTGATAGAGAAGGGTTTAAGTACAATTTCACAGGTGGTAGTGGTAATGTCTCTAGTGATTATCACCACCATCTTCATAATCAAGAGGGGGTCATCAAGGAACAAGATCGGTTGCTTCCAATTGCTAATGTTGGGCGGATCATGAAGCAGATTTTGCCTCCAAATGCAAAAATCTCGAAAGAAGCCAAAGAAACCATGCAAGAATGTGTTTCTGAGTTCATAAGTTTTGTGACTGGAGAAGCATCTGACAAGTGCCACAAAGAGAAGCGCAAGACAGTGAATGGGGATGACATTTGCTGGGCTCTGGCAACTCTTGGATTCGATGATTACGCAGAACCGCTGAAGAGGTACTTGCATAGGTACAGAGAATTGGAAGGTGAGAAGGCTGCTCACCAAGGTAAGGCTAACAGTAATGAGGAAAAAGCTGAAGTTTCACCACCAAGGACAAGATTTCCTACAGCGGCAGCTGATATGTCTAATCCTCCATATATGGAAAGGGGAAATAGCTCGCTCTCCCGGCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

187

Amino Acids

20.92

Weight (kDa)

6.66

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	37 - 113	4.9e-08	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	49 - 113	9.3e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	169, 371, 494
AclWI	GGATC	1 cut(s)	179
AcuI	CTGAAG	2 cut(s)	395, 480
AfaI	GTAC	3 cut(s)	56, 383, 395
AfiI	CCNNNNNNNGG	1 cut(s)	433
AluBI	AGCT	4 cut(s)	35, 458, 500, 540
AluI	AGCT	4 cut(s)	35, 458, 500, 540
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	419, 497
AspLEI	GCGC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	4 cut(s)	89, 416, 422, 459
BanII	GRGCYC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	406, 509
BccI	CCATC	1 cut(s)	111
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	3 cut(s)	420, 495, 498
BlsI	GCNGC	3 cut(s)	421, 496, 499
Bme1390I	CCNGG	1 cut(s)	550
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	550
BsaJI	CCNNGG	2 cut(s)	427, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	427, 473
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	406, 509
BseYI	CCCAGC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	550
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	139, 171
BspACI	CCGC	3 cut(s)	169, 371, 494
BspCNI	CTCAG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	174
BspPI	GGATC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	427, 473
BssMI	GATC	2 cut(s)	139, 171
BssT1I	CCWWGG	2 cut(s)	427, 473
Bst4CI	ACNGT	2 cut(s)	310, 443
Bst6I	CTCTTC	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	542
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	2 cut(s)	142, 174
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	2 cut(s)	139, 171
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 550
BstSCI	CCNGG	1 cut(s)	548
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	406, 509
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	542
CciI	TCATGA	1 cut(s)	174
CfoI	GCGC	1 cut(s)	303
Csp6I	GTAC	3 cut(s)	55, 382, 394
CviAII	CATG	2 cut(s)	175, 229
CviJI	RGCY	8 cut(s)	35, 218, 335, 419, 437, 458, 500, 540
CviKI_1	RGCY	8 cut(s)	35, 218, 335, 419, 437, 458, 500, 540
CviQI	GTAC	3 cut(s)	55, 382, 394
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	141, 173
DpnII	GATC	2 cut(s)	139, 171
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	427, 473
Eco24I	GRGCYC	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	395, 480
EcoT14I	CCWWGG	2 cut(s)	427, 473
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	427, 473
FaeI	CATG	2 cut(s)	178, 232
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	2 cut(s)	174, 228
Fnu4HI	GCNGC	3 cut(s)	420, 495, 498
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	420, 495, 498
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	3 cut(s)	420, 495, 498
GsaI	CCCAGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	288
HapII	CCGG	1 cut(s)	550
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	178, 232
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	4 cut(s)	89, 416, 422, 459
Hpy188I	TCNGA	2 cut(s)	247, 280
Hpy188III	TCNNGA	3 cut(s)	116, 175, 208
HpyAV	CCTTC	3 cut(s)	38, 401, 409
HpyCH4III	ACNGT	2 cut(s)	310, 443
HpyCH4V	TGCA	3 cut(s)	200, 232, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 550
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	178, 232
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	139, 171
LpnPI	CCDG	4 cut(s)	51, 252, 316, 323
Lsp1109I	GCAGC	2 cut(s)	406, 509
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	141, 173
MboI	GATC	2 cut(s)	139, 171
MboII	GAAGA	2 cut(s)	98, 388
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	4 cut(s)	25, 58, 153, 401
MnlI	CCTC	5 cut(s)	112, 201, 372, 442, 525
MseI	TTAA	1 cut(s)	51
MspA1I	CMGCKG	4 cut(s)	35, 373, 494, 500
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	1 cut(s)	550
MunI	CAATTG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	187, 550
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	2 cut(s)	139, 171
NlaIII	CATG	2 cut(s)	178, 232
NmuCI	GTSAC	1 cut(s)	262
PagI	TCATGA	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	351
PkrI	GCNGC	3 cut(s)	421, 496, 499
PspFI	CCCAGC	1 cut(s)	330
PvuII	CAGCTG	2 cut(s)	35, 500
RsaI	GTAC	3 cut(s)	56, 383, 395
RsaNI	GTAC	3 cut(s)	55, 382, 394
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	3 cut(s)	420, 495, 498
Sau3AI	GATC	2 cut(s)	139, 171
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	9 cut(s)	37, 70, 383, 395, 412, 433, 460, 502, 542
SfaNI	GCATC	1 cut(s)	284
SfcI	CTRYAG	1 cut(s)	489
Sse9I	AATT	4 cut(s)	25, 58, 153, 401
SsiI	CCGC	3 cut(s)	169, 371, 494
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	548
StyI	CCWWGG	2 cut(s)	427, 473
TaaI	ACNGT	2 cut(s)	310, 443
TaqI	TCGA	2 cut(s)	209, 354
TasI	AATT	4 cut(s)	25, 58, 153, 401
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	419, 497
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	18, 98, 191, 241
TspRI	CASTG	1 cut(s)	315
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.