Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Reverse (-)

37619228 .. 37619686

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0233700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAAGGGATCAACTCATCATCATCTGCAGAAGGAAAGCAAAGCCGAAAGGCAATGCTAAAGAAAGCACTCTTTCATCATTTCAGATCAGCTCGGGTTCATCACAAGAACAGAAGCAGCAGGAGCAATCTACTATCGAAGGCCACAGCCATTGCAAGGGCGAGCGGCCAGGAGGGTATCAATGTACTTTCCCAGTTGACTCAGGAAAACAATGGGGTGGTGAGGATGAAGATTCTGGTGAGAAAGGAAGATTTGGAGCAAGTTTTGGAACTGATGAGAAATAACAACAACAATAATAACAATACTAACCACAATAACACGGATAATTTTACTGATGAGGACGAAGAAAAAGCATCATTGTTGATTGAGGAGCGCCTAAATCTCTTGCGGAAAAAGCATAGGCGCCACAATTCTTGGAGTCCTGCTCTTCAAACCATCCCGGAAGAAATTTTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

152

Amino Acids

17.37

Weight (kDa)

9.9

Isoelectric Point (pI)

61.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	402
AccBSI	CCGCTC	1 cut(s)	165
AciI	CCGC	2 cut(s)	165, 388
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	447
AcyI	GRCGYC	1 cut(s)	403
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwI	GGATC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	2 cut(s)	141, 166
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	447
AspLEI	GCGC	2 cut(s)	375, 405
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	232, 250
AvaI	CYCGRG	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	440
BfaI	CTAG	1 cut(s)	457
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	2 cut(s)	376, 406
BisI	GCNGC	2 cut(s)	118, 166
BlsI	GCNGC	2 cut(s)	119, 167
Bme1390I	CCNGG	2 cut(s)	170, 440
BmeT110I	CYCGRG	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	404
BmrFI	CCNGG	2 cut(s)	170, 440
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
BpuMI	CCSGG	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	2 cut(s)	60, 150
BseBI	CCWGG	1 cut(s)	170
BseGI	GGATG	2 cut(s)	231, 435
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	2 cut(s)	60, 150
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	129
BshFI	GGCC	2 cut(s)	143, 168
BshNI	GGYRCC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	156
BsnI	GGCC	2 cut(s)	143, 168
BsoBI	CYCGRG	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	9, 86
BspACI	CCGC	2 cut(s)	165, 388
BspANI	GGCC	2 cut(s)	143, 168
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	404
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	402
BsrBI	CCGCTC	1 cut(s)	165
BsrDI	GCAATG	2 cut(s)	60, 150
BsrI	ACTGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	9, 86
BssNI	GRCGYC	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	231, 435
BstH2I	RGCGCY	2 cut(s)	376, 406
BstHHI	GCGC	2 cut(s)	375, 405
BstKTI	GATC	2 cut(s)	12, 89
BstMBI	GATC	2 cut(s)	9, 86
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 394
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	168, 438
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	143, 168
BtsCI	GGATG	2 cut(s)	231, 435
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	2 cut(s)	375, 405
Csp6I	GTAC	1 cut(s)	185
CspCI	CAANNNNNGTGG	4 cut(s)	133, 168, 395, 430
CviJI	RGCY	6 cut(s)	45, 92, 143, 149, 168, 455
CviKI_1	RGCY	6 cut(s)	45, 92, 143, 149, 168, 455
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	201
DinI	GGCGCC	1 cut(s)	404
DpnI	GATC	2 cut(s)	11, 88
DpnII	GATC	2 cut(s)	9, 86
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	404
EheI	GGCGCC	1 cut(s)	404
FaiI	YATR	1 cut(s)	399
Fnu4HI	GCNGC	2 cut(s)	118, 166
FokI	GGATG	2 cut(s)	238, 422
Fsp4HI	GCNGC	2 cut(s)	118, 166
FspBI	CTAG	1 cut(s)	457
GlaI	GCGC	2 cut(s)	374, 404
GluI	GCNGC	2 cut(s)	118, 166
HaeII	RGCGCY	2 cut(s)	376, 406
HaeIII	GGCC	2 cut(s)	143, 168
HapII	CCGG	1 cut(s)	440
HhaI	GCGC	2 cut(s)	375, 405
Hin1I	GRCGYC	1 cut(s)	403
Hin6I	GCGC	2 cut(s)	373, 403
HinP1I	GCGC	2 cut(s)	373, 403
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	3 cut(s)	199, 232, 418
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	2 cut(s)	232, 250
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	2 cut(s)	26, 133
HpyCH4V	TGCA	2 cut(s)	29, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 394
HpyF3I	CTNAG	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	403
HspAI	GCGC	2 cut(s)	373, 403
KasI	GGCGCC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	9, 86
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	123, 256, 370
LpnPI	CCDG	8 cut(s)	106, 155, 182, 188, 206, 221, 435, 453
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	362
MaeI	CTAG	1 cut(s)	457
MalI	GATC	2 cut(s)	11, 88
MbiI	CCGCTC	1 cut(s)	165
MboI	GATC	2 cut(s)	9, 86
MboII	GAAGA	5 cut(s)	241, 260, 356, 419, 455
MluCI	AATT	3 cut(s)	325, 409, 447
Mly113I	GGCGCC	1 cut(s)	403
MlyI	GAGTC	2 cut(s)	193, 427
MnlI	CCTC	4 cut(s)	166, 216, 331, 361
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	170, 440
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	123, 394
NarI	GGCGCC	1 cut(s)	403
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	2 cut(s)	9, 86
NlaIV	GGNNCC	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	232
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	119, 167
PleI	GAGTC	2 cut(s)	193, 426
PluTI	GGCGCC	1 cut(s)	406
PpsI	GAGTC	2 cut(s)	193, 426
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	404
PstI	CTGCAG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	432
SatI	GCNGC	2 cut(s)	118, 166
Sau3AI	GATC	2 cut(s)	9, 86
SchI	GAGTC	2 cut(s)	193, 427
ScrFI	CCNGG	2 cut(s)	170, 440
SetI	ASST	1 cut(s)	94
SfaNI	GCATC	1 cut(s)	362
SfcI	CTRYAG	1 cut(s)	27
SfoI	GGCGCC	1 cut(s)	404
Sse9I	AATT	3 cut(s)	325, 409, 447
SsiI	CCGC	2 cut(s)	165, 388
SspDI	GGCGCC	1 cut(s)	402
SspMI	CTAG	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	168, 438
TaqI	TCGA	1 cut(s)	137
TasI	AATT	3 cut(s)	325, 409, 447
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	65, 89, 242
TspGWI	ACGGA	1 cut(s)	335
XapI	RAATTY	1 cut(s)	447
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.