Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Forward (+)

13815353 .. 13815826

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1170200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTCGACAATAATAATCCTGGAGCAAGCGGAGCTGCAAAGGATGATGATATTGATGGAGGCATCAAGGAGCAAGACCAGCTGCTGCCAATAGCCAACGTCGGGCGGATCATGAAGCAAATATTGCCACCCAACGCCAAGATCTCAAAGGAGGCCAAGGAAACCATGCAAGAATGCGCGTCGGAGTTCATCAGCTTTGTCACCGGCGAGGCCTCGGAGAAGTGCCGCAAAGAGAGGCGGAAGACCGTGAATGGTGACGATGTCTGCTGGGCGCTAAGAGCGCTGGGTTTCGATGACTACACCGGTCCGTTGCGAAGGTACTTACACAGGTATAGAGAGCAAGAAAGGGATGGAATATCATCGGAGGCTAACAACAATATTAATGAAGATCATCAAAGGATATCGATCAACAATATTCCTCATACAAAAGGATCTAATTATTTCAAAGGATCAAGTACTTCTGGTTGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

6.31

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	13 - 93	8e-08	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	29 - 92	9.7e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	1 cut(s)	179
AciI	CCGC	4 cut(s)	30, 106, 226, 238
AclWI	GGATC	3 cut(s)	116, 439, 457
AfaI	GTAC	2 cut(s)	320, 457
AfeI	AGCGCT	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgeI	ACCGGT	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	3 cut(s)	35, 82, 195
AluI	AGCT	3 cut(s)	35, 82, 195
AlwI	GGATC	3 cut(s)	116, 439, 457
AlwNI	CAGNNNCTG	1 cut(s)	85
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	2 cut(s)	153, 210
ApeKI	GCWGC	3 cut(s)	35, 82, 85
AseI	ATTAAT	1 cut(s)	381
AsiGI	ACCGGT	1 cut(s)	302
AspLEI	GCGC	3 cut(s)	179, 274, 283
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	193, 266
AvaII	GGWCC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	22, 69, 72
BccI	CCATC	2 cut(s)	50, 344
BciT130I	CCWGG	1 cut(s)	21
BfoI	RGCGCY	2 cut(s)	275, 284
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	4 cut(s)	36, 83, 86, 226
BlsI	GCNGC	4 cut(s)	37, 84, 87, 227
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	1 cut(s)	42
Bsa29I	ATCGAT	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	156, 213
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse118I	RCCGGY	2 cut(s)	203, 302
Bse8I	GATNNNNATC	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	21
BseCI	ATCGAT	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	156, 213
BseGI	GGATG	2 cut(s)	49, 355
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	22, 69, 72
BseYI	CCCAGC	2 cut(s)	267, 283
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	155, 212
BshTI	ACCGGT	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	404
BsiSI	CCGG	2 cut(s)	204, 303
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	155, 212
Bsp143I	GATC	6 cut(s)	108, 141, 388, 405, 431, 449
BspACI	CCGC	4 cut(s)	30, 106, 226, 238
BspANI	GGCC	2 cut(s)	155, 212
BspDI	ATCGAT	1 cut(s)	404
BspFNI	CGCG	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	111
BspPI	GGATC	3 cut(s)	116, 439, 457
BsrFI	RCCGGY	2 cut(s)	203, 302
BssAI	RCCGGY	2 cut(s)	203, 302
BssECI	CCNNGG	2 cut(s)	156, 213
BssMI	GATC	6 cut(s)	108, 141, 388, 405, 431, 449
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	49, 355
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	2 cut(s)	275, 284
BstHHI	GCGC	3 cut(s)	179, 274, 283
BstKTI	GATC	6 cut(s)	111, 144, 391, 408, 434, 452
BstMBI	GATC	6 cut(s)	108, 141, 388, 405, 431, 449
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 79, 124, 278, 280
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	22, 69, 72
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	2 cut(s)	141, 431
BstYI	RGATCY	2 cut(s)	141, 431
Bsu15I	ATCGAT	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	155, 212
BsuTUI	ATCGAT	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	49, 355
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	85
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	3 cut(s)	179, 274, 283
Cfr10I	RCCGGY	2 cut(s)	203, 302
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	404
CpoI	CGGWCCG	1 cut(s)	305
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	319, 456
CspAI	ACCGGT	1 cut(s)	302
CspI	CGGWCCG	1 cut(s)	305
CviAII	CATG	2 cut(s)	112, 166
CviJI	RGCY	7 cut(s)	35, 82, 95, 155, 195, 212, 368
CviKI_1	RGCY	7 cut(s)	35, 82, 95, 155, 195, 212, 368
CviQI	GTAC	2 cut(s)	319, 456
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	6 cut(s)	110, 143, 390, 407, 433, 451
DpnII	GATC	6 cut(s)	108, 141, 388, 405, 431, 449
EciI	GGCGGA	2 cut(s)	121, 253
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	212
Eco32I	GATATC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	305
Eco47III	AGCGCT	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	115, 169
FaiI	YATR	4 cut(s)	113, 167, 333, 423
FatI	CATG	2 cut(s)	111, 165
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	4 cut(s)	36, 83, 86, 226
FokI	GGATG	2 cut(s)	56, 362
Fsp4HI	GCNGC	4 cut(s)	36, 83, 86, 226
GlaI	GCGC	3 cut(s)	178, 273, 282
GluI	GCNGC	4 cut(s)	36, 83, 86, 226
GsaI	CCCAGC	2 cut(s)	271, 287
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	2 cut(s)	275, 284
HaeIII	GGCC	2 cut(s)	155, 212
HapII	CCGG	2 cut(s)	204, 303
HgaI	GACGC	1 cut(s)	168
HhaI	GCGC	3 cut(s)	179, 274, 283
Hin1II	CATG	2 cut(s)	115, 169
Hin6I	GCGC	3 cut(s)	177, 272, 281
HinP1I	GCGC	3 cut(s)	177, 272, 281
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	204, 303
HphI	GGTGA	2 cut(s)	193, 266
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	184, 217, 364
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	2 cut(s)	104, 184
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	38, 169
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 79, 124, 278, 280
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	115, 169
HspAI	GCGC	3 cut(s)	177, 272, 281
Kzo9I	GATC	6 cut(s)	108, 141, 388, 405, 431, 449
LmnI	GCTCC	3 cut(s)	23, 32, 70
LpnPI	CCDG	9 cut(s)	6, 33, 92, 217, 253, 269, 313, 316, 447
Lsp1109I	GCAGC	3 cut(s)	22, 69, 72
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	199, 254
MalI	GATC	6 cut(s)	110, 143, 390, 407, 433, 451
MboI	GATC	6 cut(s)	108, 141, 388, 405, 431, 449
MboII	GAAGA	2 cut(s)	253, 398
MflI	RGATCY	2 cut(s)	141, 431
MluCI	AATT	1 cut(s)	436
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	7 cut(s)	53, 145, 202, 223, 228, 358, 429
MseI	TTAA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	2 cut(s)	204, 303
MspR9I	CCNGG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	21
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	5 cut(s)	32, 79, 124, 278, 280
NdeII	GATC	6 cut(s)	108, 141, 388, 405, 431, 449
NlaIII	CATG	2 cut(s)	115, 169
NmuCI	GTSAC	2 cut(s)	199, 254
PagI	TCATGA	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	212
PctI	GAATGC	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	19
PinAI	ACCGGT	1 cut(s)	302
PkrI	GCNGC	4 cut(s)	37, 84, 87, 227
PshBI	ATTAAT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	19
PspFI	CCCAGC	2 cut(s)	267, 283
PspGI	CCWGG	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	141, 431
PsyI	GACNNNGTC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	2 cut(s)	320, 457
RsaNI	GTAC	2 cut(s)	319, 456
Rsr2I	CGGWCCG	1 cut(s)	305
RsrII	CGGWCCG	1 cut(s)	305
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	4 cut(s)	36, 83, 86, 226
Sau3AI	GATC	6 cut(s)	108, 141, 388, 405, 431, 449
Sau96I	GGNCC	1 cut(s)	305
ScaI	AGTACT	1 cut(s)	457
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	6 cut(s)	37, 84, 102, 197, 320, 332
SfaNI	GCATC	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	305
Sse9I	AATT	1 cut(s)	436
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	4 cut(s)	30, 106, 226, 238
SspI	AATATT	3 cut(s)	123, 379, 415
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	6, 291, 404
TasI	AATT	1 cut(s)	436
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TseFI	GTSAC	2 cut(s)	199, 254
TseI	GCWGC	3 cut(s)	35, 82, 85
Tsp45I	GTSAC	2 cut(s)	199, 254
TspDTI	ATGAA	3 cut(s)	128, 178, 399
TspGWI	ACGGA	1 cut(s)	297
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	381
XmiI	GTMKAC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.