RLG00000007656

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002053
Physical Location & Seq
Forward (+)
19517948 .. 19519810
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007656

Sequence Viewer

Length: 696 bp
ATGGTGATTACCAACTTAAATGGAGCTGGGTTGGATTTGGATTCGGTATTGGCTGCAATTTTGGGGTTGGATTTGGAGGCAGAACGAGAAGGAAGATCTTGTTCTGGGCTTGGAGTCGAGTCGCCGGAAGATATCGATGATGACCTCGTCGGGAAGGCACATCGAACCACAAGACACAATTCCTACCTCGTATCCAGCCCAATGGCAGACAATATTGGTGGAAGTGCTCCCAATATCTGTGATCTTGATCAGGGAGATATCAAGACCGAACAGCCAGACCAATTGCTCCCCATAGCCAACGTTGGGAGGATCATGAAGCAAATCCTGCCACCAAACGCCAAAATCTCAAAGGAAGCCAAGGAAACGATGCAAGAGTGCGTCTCCGAGTTCATCAGCTTCGTCACCGGAGAGGCCTCCCACAAGTGCCAAAAGGAGAAAAGGAAGACGGTGAACGGCGACGACATCTGCTGGGCTCTGGCAACCCTGGGATTCGATAACTACGCCGGCCCGCTGAGGAGGTATTTACACAGGTATAGAGATCAAGAAGGAGCTGAGCACATAGCTAATGATAACAATAATAATGAAGACAAACTGAAGCTGCTGGTTAACAACATCTTGAGTACTGATCAAGAACAAAGGATCATCATGATCATGAACCAATACGATCATCCTCATCATGATATCCAGAAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000981 GO:0001067 GO:0001654 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0007423 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010720 GO:0010941 GO:0016070 GO:0016602 GO:0018130 GO:0019216 GO:0019218 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0022008 GO:0022603 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0032993 GO:0034097 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043408 GO:0043410 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0044877 GO:0045540 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045676 GO:0045678 GO:0045893 GO:0045935 GO:0045937 GO:0046483 GO:0046532 GO:0046534 GO:0046890 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048699 GO:0048731 GO:0048749 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0050810 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0051960 GO:0051962 GO:0060255 GO:0060284 GO:0060548 GO:0062012 GO:0065007 GO:0070013 GO:0070491 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090181 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0106118 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902533 GO:1902680 GO:1902930 GO:1903506 GO:1903508 GO:1990823 GO:1990830 GO:1990837 GO:2000026 GO:2000027 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04612 ko05152 ko05166 map04612 map05152 map05166
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

232

Amino Acids

25.66

Weight (kDa)

4.99

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 92 - 159 1.3e-07 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 96 - 159 3.3e-27 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 509
AclI AACGTT 1 cut(s) 300
AclWI GGATC 2 cut(s) 317, 647
AcuI CTGAAG 1 cut(s) 614
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 1 cut(s) 303
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 5 cut(s) 26, 396, 551, 563, 598
AluI AGCT 5 cut(s) 26, 396, 551, 563, 598
Alw21I GWGCWC 2 cut(s) 229, 558
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 2 cut(s) 317, 647
AoxI GGCC 2 cut(s) 411, 505
ApeKI GCWGC 2 cut(s) 53, 598
AspS9I GGNCC 1 cut(s) 506
AsuHPI GGTGA 3 cut(s) 16, 394, 460
BanII GRGCYC 1 cut(s) 475
BbsI GAAGAC 2 cut(s) 449, 591
Bbv12I GWGCWC 2 cut(s) 229, 558
BbvCI CCTCAGC 1 cut(s) 512
BbvI GCAGC 2 cut(s) 40, 585
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 1 cut(s) 485
BciVI GTATCC 1 cut(s) 202
BclI TGATCA 3 cut(s) 247, 625, 648
BcoDI GTCTC 1 cut(s) 385
BfuI GTATCC 1 cut(s) 202
BglII AGATCT 1 cut(s) 95
BisI GCNGC 2 cut(s) 54, 599
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 2 cut(s) 55, 600
BmcAI AGTACT 1 cut(s) 622
Bme1390I CCNGG 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 506
BmrFI CCNGG 1 cut(s) 485
BmsI GCATC 1 cut(s) 357
BpiI GAAGAC 2 cut(s) 449, 591
BplI GAGNNNNNCTC 2 cut(s) 365, 397
Bpu10I CCTNAGC 1 cut(s) 512
Bpu1102I GCTNAGC 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 637
Bsa29I ATCGAT 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 357, 483, 484
BsaWI WCCGGW 1 cut(s) 404
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse118I RCCGGY 1 cut(s) 503
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 1 cut(s) 485
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 3 cut(s) 357, 483, 484
BseGI GGATG 1 cut(s) 667
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 303
BseMII CTCAG 2 cut(s) 503, 543
BseRI GAGGAG 1 cut(s) 529
BseXI GCAGC 2 cut(s) 40, 585
BseYI CCCAGC 2 cut(s) 26, 468
BshFI GGCC 2 cut(s) 413, 507
BshVI ATCGAT 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 229, 558
BsiSI CCGG 3 cut(s) 125, 405, 504
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 385
BsmBI CGTCTC 1 cut(s) 385
BsnI GGCC 2 cut(s) 413, 507
Bsp1286I GDGCHC 3 cut(s) 229, 475, 558
Bsp143I GATC 9 cut(s) 95, 241, 247, 309, 538, 625, 639, 648, 664
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 1 cut(s) 509
BspANI GGCC 2 cut(s) 413, 507
BspCNI CTCAG 2 cut(s) 504, 544
BspDI ATCGAT 1 cut(s) 135
BspHI TCATGA 4 cut(s) 312, 645, 651, 676
BspPI GGATC 2 cut(s) 317, 647
BsrFI RCCGGY 1 cut(s) 503
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 3 cut(s) 357, 483, 484
BssMI GATC 9 cut(s) 95, 241, 247, 309, 538, 625, 639, 648, 664
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 448
BstAPI GCANNNNNTGC 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 505, 509
BstDEI CTNAG 2 cut(s) 512, 552
BstF5I GGATG 1 cut(s) 667
BstKTI GATC 9 cut(s) 98, 244, 250, 312, 541, 628, 642, 651, 667
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 9 cut(s) 95, 241, 247, 309, 538, 625, 639, 648, 664
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 40, 585
BstV2I GAAGAC 2 cut(s) 449, 591
BstX2I RGATCY 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 135
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 413, 507
BsuTUI ATCGAT 1 cut(s) 135
BtsCI GGATG 1 cut(s) 667
Cac8I GCNNGC 2 cut(s) 505, 509
CciI TCATGA 4 cut(s) 312, 645, 651, 676
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 506
ClaI ATCGAT 1 cut(s) 135
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 621
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 4 cut(s) 313, 646, 652, 677
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 2 cut(s) 512, 552
DpnI GATC 9 cut(s) 97, 243, 249, 311, 540, 627, 641, 650, 666
DpnII GATC 9 cut(s) 95, 241, 247, 309, 538, 625, 639, 648, 664
Eco130I CCWWGG 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 475
Eco32I GATATC 3 cut(s) 133, 259, 682
Eco57I CTGAAG 1 cut(s) 614
EcoRII CCWGG 1 cut(s) 483
EcoRV GATATC 3 cut(s) 133, 259, 682
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 4 cut(s) 316, 649, 655, 680
FaiI YATR 7 cut(s) 293, 314, 534, 560, 647, 653, 678
FatI CATG 4 cut(s) 312, 645, 651, 676
FauI CCCGC 1 cut(s) 516
FbaI TGATCA 3 cut(s) 247, 625, 648
Fnu4HI GCNGC 2 cut(s) 54, 599
FokI GGATG 1 cut(s) 654
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 2 cut(s) 54, 599
GluI GCNGC 2 cut(s) 54, 599
GsaI CCCAGC 2 cut(s) 30, 472
HaeIII GGCC 2 cut(s) 413, 507
HapII CCGG 3 cut(s) 125, 405, 504
HgaI GACGC 1 cut(s) 367
Hin1II CATG 4 cut(s) 316, 649, 655, 680
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 4 cut(s) 41, 114, 119, 489
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 3 cut(s) 125, 405, 504
HphI GGTGA 3 cut(s) 16, 394, 460
Hpy166II GTNNAC 2 cut(s) 451, 607
Hpy188I TCNGA 1 cut(s) 385
Hpy8I GTNNAC 2 cut(s) 451, 607
Hpy99I CGWCG 2 cut(s) 152, 461
HpyAV CCTTC 3 cut(s) 83, 148, 539
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 56, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 2 cut(s) 512, 552
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 4 cut(s) 316, 649, 655, 680
KroI GCCGGC 1 cut(s) 503
KroNI GCCGGC 1 cut(s) 505
Ksp22I TGATCA 3 cut(s) 247, 625, 648
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 9 cut(s) 95, 241, 247, 309, 538, 625, 639, 648, 664
LmnI GCTCC 4 cut(s) 23, 232, 291, 548
Lsp1109I GCAGC 2 cut(s) 40, 585
LweI GCATC 1 cut(s) 357
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 400
MalI GATC 9 cut(s) 97, 243, 249, 311, 540, 627, 641, 650, 666
MboI GATC 9 cut(s) 95, 241, 247, 309, 538, 625, 639, 648, 664
MboII GAAGA 4 cut(s) 105, 140, 454, 596
MfeI CAATTG 1 cut(s) 281
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 3 cut(s) 229, 475, 558
MluCI AATT 3 cut(s) 57, 178, 281
MlyI GAGTC 2 cut(s) 123, 128
MmeI TCCRAC 2 cut(s) 12, 48
MnlI CCTC 9 cut(s) 70, 155, 197, 300, 403, 424, 507, 510, 681
MroNI GCCGGC 1 cut(s) 503
MseI TTAA 2 cut(s) 17, 606
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 3 cut(s) 125, 405, 504
MspR9I CCNGG 1 cut(s) 485
MunI CAATTG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 1 cut(s) 325
NaeI GCCGGC 1 cut(s) 505
NdeII GATC 9 cut(s) 95, 241, 247, 309, 538, 625, 639, 648, 664
NgoMIV GCCGGC 1 cut(s) 503
NlaIII CATG 4 cut(s) 316, 649, 655, 680
NmuCI GTSAC 1 cut(s) 400
PagI TCATGA 4 cut(s) 312, 645, 651, 676
PasI CCCWGGG 1 cut(s) 484
PceI AGGCCT 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 505
PfeI GAWTC 2 cut(s) 41, 489
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 2 cut(s) 55, 600
PleI GAGTC 2 cut(s) 122, 127
PpsI GAGTC 2 cut(s) 122, 127
Psp1406I AACGTT 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 483
PspFI CCCAGC 2 cut(s) 26, 468
PspGI CCWGG 1 cut(s) 483
PspPI GGNCC 1 cut(s) 506
PsuI RGATCY 1 cut(s) 95
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
RseI CAYNNNNRTG 1 cut(s) 650
SaqAI TTAA 2 cut(s) 17, 606
SatI GCNGC 2 cut(s) 54, 599
Sau3AI GATC 9 cut(s) 95, 241, 247, 309, 538, 625, 639, 648, 664
Sau96I GGNCC 1 cut(s) 506
ScaI AGTACT 1 cut(s) 622
SchI GAGTC 2 cut(s) 123, 128
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 3 cut(s) 229, 475, 558
SfaNI GCATC 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
Sse9I AATT 3 cut(s) 57, 178, 281
SseBI AGGCCT 1 cut(s) 413
SsiI CCGC 1 cut(s) 509
SspI AATATT 1 cut(s) 214
StuI AGGCCT 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 483
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 1 cut(s) 303
TaqI TCGA 4 cut(s) 117, 135, 163, 492
TaqII GACCGA 1 cut(s) 281
TasI AATT 3 cut(s) 57, 178, 281
TatI WGTACW 1 cut(s) 620
TfiI GAWTC 2 cut(s) 41, 489
Tru1I TTAA 2 cut(s) 17, 606
Tru9I TTAA 2 cut(s) 17, 606
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 2 cut(s) 53, 598
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 4 cut(s) 329, 379, 597, 668
Tth111I GACNNNGTC 1 cut(s) 146
ZrmI AGTACT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.