Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Reverse (-)

17959164 .. 17964486

Gene Structure 5323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G175100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAGTGCAAGAGTGAGTGAACCGTTGAATTTACATCCAACAACCAACTCCAGCGGCACAGCCCAGCCCGAGGCTAAGGGAGAAAAAAAAAAAAAAAAGGTGTTCCAGCGCACAGCCCAGGCCCGAGCGCAAGATTCCACAACAAACACTCAACACAAGAAAGAAAAAGGAAGAAAAAGAAAAACCAGTACACATTTTCCTTCACTTGCATTTCCCTTTTCTATTTCACACAATCACTCTGAGCTTAACTCTATGAGTGGAAGAAGAAACCAAACCAGCCCGGTTGGAAGCCCTTTGTCTGGGAATGTCTCAGACGGCTCTTCCAAAGAGCAAGACAAGTTCCTCCCCATTGCTAACGTGAGCCGTATCATGAAGAAGTCCCTCCCTGCAAATGCCAAGATCTCAAAGGAGGCCAAGGAAACCGTCCAGGAGTGTGTGTCTGAGTTCATAAGCTTCATCACGGGTGAAGCGTCTGACAAGTGCCTGAGGGAGAAAAGGAAGACTATCAATGGAGATGACCTTCTTTGGGCCATGACAACCCTTGGATTTGAGAATTATGTAGGACCCTTGAAAGGGTATCTCAACAAGTATAGGGAGACTGAGGGGGAGAAGAACTCCATGACTAGACAAGAAGAAGACCCTTCTCAACAACAGCAGCAACATCTCAACACTTCAAACACCAATATGCAGCATAGTTCTAACAATGAGCAAATGAACACAGTTCTTAATGCCAATAATATTTCTATGTCAACCTCTAAGGTGGATCTTTTCAATGGTGGCTTCTATTTTCTTGAGGGACAACAGCAACAGCAGGAAGTGACTCAAAACTACAATTTGGTGAGTGCTGGGGCTTATAATTTGAGTAGGATTAATGAGAGTGGAGATGTGAATGGAAACAGAGATTTGGCAACTCATCATCTTCATAATGGCATAGGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031326 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051510 GO:0051512 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

314

Amino Acids

34.88

Weight (kDa)

9.25

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	771
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	5 cut(s)	70, 299, 526, 572, 573
AgsI	TTSAA	4 cut(s)	28, 571, 675, 772
AjnI	CCWGG	2 cut(s)	117, 426
AluBI	AGCT	2 cut(s)	244, 453
AluI	AGCT	2 cut(s)	244, 453
Alw26I	GTCTC	2 cut(s)	313, 590
AlwI	GGATC	1 cut(s)	771
Ama87I	CYCGRG	2 cut(s)	68, 123
AoxI	GGCC	3 cut(s)	120, 411, 528
ApeKI	GCWGC	2 cut(s)	655, 688
ApoI	RAATTY	1 cut(s)	28
AseI	ATTAAT	1 cut(s)	870
AspLEI	GCGC	2 cut(s)	111, 130
AspS9I	GGNCC	3 cut(s)	121, 528, 563
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	476, 850
AvaI	CYCGRG	2 cut(s)	68, 123
AvaII	GGWCC	1 cut(s)	563
AxyI	CCTNAGG	1 cut(s)	485
BbsI	GAAGAC	2 cut(s)	506, 642
BbvI	GCAGC	2 cut(s)	667, 700
BccI	CCATC	1 cut(s)	930
BceAI	ACGGC	2 cut(s)	331, 348
BciT130I	CCWGG	2 cut(s)	119, 428
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	313, 590
BfaI	CTAG	1 cut(s)	624
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	3 cut(s)	55, 656, 689
BlsI	GCNGC	3 cut(s)	56, 657, 690
Bme1390I	CCNGG	3 cut(s)	119, 281, 428
Bme18I	GGWCC	1 cut(s)	563
BmeT110I	CYCGRG	2 cut(s)	68, 123
BmgT120I	GGNCC	3 cut(s)	121, 528, 563
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	3 cut(s)	119, 281, 428
BpiI	GAAGAC	2 cut(s)	506, 642
BplI	GAGNNNNNCTC	4 cut(s)	233, 265, 599, 631
BpmI	CTGGAG	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	281
BsaJI	CCNNGG	4 cut(s)	69, 117, 414, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 299, 526, 572, 573
Bse1I	ACTGG	1 cut(s)	186
Bse21I	CCTNAGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	119, 428
BseDI	CCNNGG	4 cut(s)	69, 117, 414, 541
BseGI	GGATG	2 cut(s)	34, 941
BseLI	CCNNNNNNNGG	5 cut(s)	70, 299, 526, 572, 573
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	5 cut(s)	231, 324, 432, 476, 591
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	667, 700
BseYI	CCCAGC	2 cut(s)	63, 845
BshFI	GGCC	3 cut(s)	122, 413, 530
BsiHKCI	CYCGRG	2 cut(s)	68, 123
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	2 cut(s)	364, 810
BslI	CCNNNNNNNGG	5 cut(s)	70, 299, 526, 572, 573
BsmAI	GTCTC	2 cut(s)	313, 590
BsmFI	GGGAC	2 cut(s)	364, 810
BsnI	GGCC	3 cut(s)	122, 413, 530
BsoBI	CYCGRG	2 cut(s)	68, 123
Bsp143I	GATC	2 cut(s)	399, 763
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	3 cut(s)	122, 413, 530
BspCNI	CTCAG	5 cut(s)	232, 323, 433, 477, 592
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	565
BspPI	GGATC	1 cut(s)	771
BspQI	GCTCTTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	4 cut(s)	69, 117, 414, 541
BssMI	GATC	2 cut(s)	399, 763
BssT1I	CCWWGG	2 cut(s)	414, 541
Bst2UI	CCWGG	2 cut(s)	119, 428
Bst4CI	ACNGT	3 cut(s)	24, 424, 721
Bst6I	CTCTTC	1 cut(s)	325
BstDEI	CTNAG	7 cut(s)	75, 240, 310, 441, 485, 600, 756
BstF5I	GGATG	2 cut(s)	34, 941
BstHHI	GCGC	2 cut(s)	111, 130
BstKTI	GATC	2 cut(s)	402, 766
BstMAI	GTCTC	2 cut(s)	313, 590
BstMBI	GATC	2 cut(s)	399, 763
BstNI	CCWGG	2 cut(s)	119, 428
BstSCI	CCNGG	3 cut(s)	117, 279, 426
BstV1I	GCAGC	2 cut(s)	667, 700
BstV2I	GAAGAC	2 cut(s)	506, 642
BstX2I	RGATCY	2 cut(s)	399, 763
BstYI	RGATCY	2 cut(s)	399, 763
Bsu36I	CCTNAGG	1 cut(s)	485
BsuRI	GGCC	3 cut(s)	122, 413, 530
BtsCI	GGATG	2 cut(s)	34, 941
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	2 cut(s)	111, 130
Cfr13I	GGNCC	3 cut(s)	121, 528, 563
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	3 cut(s)	370, 532, 619
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	7 cut(s)	75, 240, 310, 441, 485, 600, 756
DpnI	GATC	2 cut(s)	401, 765
DpnII	GATC	2 cut(s)	399, 763
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	414, 541
Eco47I	GGWCC	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	485
Eco88I	CYCGRG	2 cut(s)	68, 123
EcoO109I	RGGNCCY	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	117, 426
EcoT14I	CCWWGG	2 cut(s)	414, 541
ErhI	CCWWGG	2 cut(s)	414, 541
FaeI	CATG	3 cut(s)	373, 535, 622
FaqI	GGGAC	2 cut(s)	364, 810
FatI	CATG	3 cut(s)	369, 531, 618
Fnu4HI	GCNGC	3 cut(s)	55, 656, 689
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	55, 656, 689
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	2 cut(s)	110, 129
GluI	GCNGC	3 cut(s)	55, 656, 689
GsaI	CCCAGC	2 cut(s)	67, 849
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	122, 413, 530
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	2 cut(s)	111, 130
Hin1II	CATG	3 cut(s)	373, 535, 622
Hin6I	GCGC	2 cut(s)	109, 128
HinP1I	GCGC	2 cut(s)	109, 128
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	2 cut(s)	134, 820
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	2 cut(s)	476, 850
Hpy166II	GTNNAC	3 cut(s)	20, 191, 750
Hpy188I	TCNGA	4 cut(s)	241, 313, 442, 475
Hpy188III	TCNNGA	2 cut(s)	370, 791
Hpy8I	GTNNAC	3 cut(s)	20, 191, 750
HpyAV	CCTTC	3 cut(s)	210, 530, 651
HpyCH4III	ACNGT	3 cut(s)	24, 424, 721
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	4 cut(s)	8, 209, 389, 688
HpyF3I	CTNAG	7 cut(s)	75, 240, 310, 441, 485, 600, 756
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	3 cut(s)	373, 535, 622
HspAI	GCGC	2 cut(s)	109, 128
Kzo9I	GATC	2 cut(s)	399, 763
LguI	GCTCTTC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	667, 700
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	817
MalI	GATC	2 cut(s)	401, 765
MboI	GATC	2 cut(s)	399, 763
MflI	RGATCY	2 cut(s)	399, 763
MluCI	AATT	4 cut(s)	28, 553, 832, 856
MlyI	GAGTC	1 cut(s)	814
MmeI	TCCRAC	2 cut(s)	62, 265
MnlI	CCTC	8 cut(s)	64, 353, 392, 403, 480, 595, 763, 787
MseI	TTAA	3 cut(s)	246, 726, 870
MslI	CAYNNNNRTG	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	3 cut(s)	119, 281, 428
MvaI	CCWGG	2 cut(s)	119, 428
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	399, 763
NlaIII	CATG	3 cut(s)	373, 535, 622
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	817
PagI	TCATGA	1 cut(s)	369
PciSI	GCTCTTC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	3 cut(s)	56, 657, 690
PleI	GAGTC	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	814
PpuMI	RGGWCCY	1 cut(s)	563
PshBI	ATTAAT	1 cut(s)	870
PsiI	TTATAA	1 cut(s)	855
Psp5II	RGGWCCY	1 cut(s)	563
Psp6I	CCWGG	2 cut(s)	117, 426
PspFI	CCCAGC	2 cut(s)	63, 845
PspGI	CCWGG	2 cut(s)	117, 426
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	3 cut(s)	121, 528, 563
PspPPI	RGGWCCY	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	399, 763
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	683
SapI	GCTCTTC	1 cut(s)	325
SaqAI	TTAA	3 cut(s)	246, 726, 870
SatI	GCNGC	3 cut(s)	55, 656, 689
Sau3AI	GATC	2 cut(s)	399, 763
Sau96I	GGNCC	3 cut(s)	121, 528, 563
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	3 cut(s)	119, 281, 428
SetI	ASST	7 cut(s)	102, 246, 360, 455, 522, 755, 762
SinI	GGWCC	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	4 cut(s)	28, 553, 832, 856
SsiI	CCGC	1 cut(s)	54
SspI	AATATT	1 cut(s)	739
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	3 cut(s)	117, 279, 426
StyI	CCWWGG	2 cut(s)	414, 541
TaaI	ACNGT	3 cut(s)	24, 424, 721
TaiI	ACGT	1 cut(s)	360
TasI	AATT	4 cut(s)	28, 553, 832, 856
TatI	WGTACW	1 cut(s)	188
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	3 cut(s)	246, 726, 870
Tru9I	TTAA	3 cut(s)	246, 726, 870
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	2 cut(s)	655, 688
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	5 cut(s)	386, 436, 445, 728, 911
VpaK11BI	GGWCC	1 cut(s)	563
VspI	ATTAAT	1 cut(s)	870
XapI	RAATTY	1 cut(s)	28
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.