Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Forward (+)

14070688 .. 14071541

Gene Structure 854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGTGGAAAAAGAAACCAAACCAGCCCGGTTGGAAGCCCTTTATCCGGTGGGAATGTATCCGACGGCGGTTCCAAAGAGCAAGACAGGTTCCTCCCCATTGCTAATGTGAGCCGGATCATGAAGAAGTCCCTCCCTGCAAATGCCAAGATTTCAAAGGAAGCCAAGGAAACTGTCCAAGAATGCGTCTCCGAATTCATTAGCTTCATCACTGGGGAAGCCTCGGACAAGTGCCAACGAGAGAAGAGGAAGACTATCAATGGCGATGATCTTCTTTGGGCCATGACAACTCTTGGTTTTGAGAACTATGTTGGACCCTTGAAGGGCTATCTCAACAAGTACAGAGAAACTGAGGGCGAGAAGAACTCCATGGCTAGAGGACAAGAAGATCAAGACCACTCGTCTCATGATGATCATCACATCAACAACAACAAGAAGCAACTCCAAAATGGTGCTAATGGGATCAACACAGTAGGAACTAATAAGGTGGATCTTCTCAGTAATATTGGTGGATTTTATTCACTTGGAGGACAACAGATGAGTGCTCCAAAGGCGTTTGGAGAGAGTGGAAGGGTTATTGACTATGGGGATCAGAATTTGATGACTTATGGGGATGGAAGTGCAAATCATCTTCACAATGGGATAGGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031326 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051510 GO:0051512 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

218

Amino Acids

23.63

Weight (kDa)

6.6

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	31 - 95	4.8e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	4 cut(s)	125, 470, 498, 597
AcsI	RAATTY	2 cut(s)	194, 595
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	47, 323
AgsI	TTSAA	2 cut(s)	156, 322
AhdI	GACNNNNNGTC	1 cut(s)	400
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	2 cut(s)	193, 408
AlwI	GGATC	4 cut(s)	125, 470, 498, 597
AoxI	GGCC	1 cut(s)	279
ApoI	RAATTY	2 cut(s)	194, 595
AspS9I	GGNCC	2 cut(s)	279, 314
AsuC2I	CCSGG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	547
BccI	CCATC	2 cut(s)	608, 642
BceAI	ACGGC	1 cut(s)	82
BciVI	GTATCC	1 cut(s)	70
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	193, 408
BfaI	CTAG	1 cut(s)	375
BfuI	GTATCC	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	314
BmeRI	GACNNNNNGTC	1 cut(s)	400
BmgT120I	GGNCC	2 cut(s)	279, 314
BmiI	GGNNCC	3 cut(s)	73, 92, 316
BmrFI	CCNGG	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpuMI	CCSGG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	165, 222, 369
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 323
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	3 cut(s)	165, 222, 369
BseGI	GGATG	2 cut(s)	619, 653
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	47, 323
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	342, 511
BseNI	ACTGG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	3 cut(s)	29, 48, 115
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	47, 323
BsmAI	GTCTC	2 cut(s)	193, 408
BsmBI	CGTCTC	2 cut(s)	193, 408
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	7 cut(s)	117, 268, 388, 412, 462, 490, 589
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	343, 510
BspHI	TCATGA	2 cut(s)	120, 406
BspLI	GGNNCC	3 cut(s)	73, 92, 316
BspPI	GGATC	4 cut(s)	125, 470, 498, 597
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	165, 222, 369
BssMI	GATC	7 cut(s)	117, 268, 388, 412, 462, 490, 589
BssT1I	CCWWGG	2 cut(s)	165, 369
Bst4CI	ACNGT	2 cut(s)	175, 472
Bst6I	CTCTTC	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	351, 497
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	619, 653
BstKTI	GATC	7 cut(s)	120, 271, 391, 415, 465, 493, 592
BstMAI	GTCTC	2 cut(s)	193, 408
BstMBI	GATC	7 cut(s)	117, 268, 388, 412, 462, 490, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	619, 653
BtsIMutI	CAGTG	1 cut(s)	210
CciI	TCATGA	2 cut(s)	120, 406
Cfr13I	GGNCC	2 cut(s)	279, 314
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	4 cut(s)	121, 283, 370, 407
CviJI	RGCY	9 cut(s)	27, 39, 114, 164, 204, 221, 281, 327, 374
CviKI_1	RGCY	9 cut(s)	27, 39, 114, 164, 204, 221, 281, 327, 374
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	351, 497
DpnI	GATC	7 cut(s)	119, 270, 390, 414, 464, 492, 591
DpnII	GATC	7 cut(s)	117, 268, 388, 412, 462, 490, 589
DriI	GACNNNNNGTC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	239
Eam1105I	GACNNNNNGTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	165, 369
Eco47I	GGWCC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	194
EcoT14I	CCWWGG	2 cut(s)	165, 369
ErhI	CCWWGG	2 cut(s)	165, 369
Esp3I	CGTCTC	2 cut(s)	193, 408
FaeI	CATG	4 cut(s)	124, 286, 373, 410
FaiI	YATR	7 cut(s)	122, 284, 309, 371, 408, 585, 609
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	120, 282, 369, 406
FbaI	TGATCA	1 cut(s)	412
FokI	GGATG	1 cut(s)	626
FspBI	CTAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	3 cut(s)	29, 48, 115
HgaI	GACGC	1 cut(s)	175
Hin1II	CATG	4 cut(s)	124, 286, 373, 410
HpaII	CCGG	3 cut(s)	29, 48, 115
Hpy188I	TCNGA	4 cut(s)	64, 193, 226, 594
Hpy188III	TCNNGA	3 cut(s)	121, 392, 407
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	316, 564
HpyCH4III	ACNGT	2 cut(s)	175, 472
HpyCH4V	TGCA	2 cut(s)	140, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	2 cut(s)	351, 497
Hsp92II	CATG	4 cut(s)	124, 286, 373, 410
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	7 cut(s)	117, 268, 388, 412, 462, 490, 589
LmnI	GCTCC	1 cut(s)	550
LpnPI	CCDG	7 cut(s)	37, 42, 61, 73, 128, 150, 198
MaeI	CTAG	1 cut(s)	375
MalI	GATC	7 cut(s)	119, 270, 390, 414, 464, 492, 591
MboI	GATC	7 cut(s)	117, 268, 388, 412, 462, 490, 589
MboII	GAAGA	8 cut(s)	136, 256, 262, 263, 373, 398, 485, 623
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	2 cut(s)	194, 595
MmeI	TCCRAC	3 cut(s)	13, 87, 292
MnlI	CCTC	7 cut(s)	104, 143, 232, 240, 346, 371, 521
MspI	CCGG	3 cut(s)	29, 48, 115
MspR9I	CCNGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	551
NciI	CCSGG	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	7 cut(s)	117, 268, 388, 412, 462, 490, 589
NlaIII	CATG	4 cut(s)	124, 286, 373, 410
NlaIV	GGNNCC	3 cut(s)	73, 92, 316
PagI	TCATGA	2 cut(s)	120, 406
PctI	GAATGC	1 cut(s)	188
PspN4I	GGNNCC	3 cut(s)	73, 92, 316
PspPI	GGNCC	2 cut(s)	279, 314
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
Sau3AI	GATC	7 cut(s)	117, 268, 388, 412, 462, 490, 589
Sau96I	GGNCC	2 cut(s)	279, 314
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	3 cut(s)	92, 206, 489
SinI	GGWCC	1 cut(s)	314
Sse9I	AATT	2 cut(s)	194, 595
SsiI	CCGC	1 cut(s)	69
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	165, 369
TaaI	ACNGT	2 cut(s)	175, 472
TasI	AATT	2 cut(s)	194, 595
TatI	WGTACW	1 cut(s)	339
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	137, 187, 196
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	2 cut(s)	194, 595
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.