Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002053

Physical Location & Seq

Genomic Coordinates Reverse (-)

14135349 .. 14135903

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011965

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAGATGGTAGATAACAGAGGCAACAACAACGATATTAGTCCAGACTCCAGAGAAGGGTTTAACTACAATTTCGCAGGTGATCGCCACCATCACGATGAGGTGATTAAGGAGCAAGATCGGCTGCTTCCGATAGCAAACGTCGGTCGGATCATGAAGCAAATCCTTCCCCCCAATGCCAAAATTTCGAAAGAGGCCAAGGAAACCATGCAAGAGTGCGTCTCGGAGTTCATTAGCTTTGTGACCGGAGAAGCCTCCGACAAGTGTCACAAGGAGAAGCGAAAGACGGTGAATGGCGACGACATTTGCTGGGCCTTATCCACGCTTGGGTTCGACGACTACTCGGAGCCGCTGAAGAGGTACTTGAATAGGTTCAGGGAATTGGAGGGGGAGAAGGCTCAGCAGAGCAAGGCCAACAGCGGCGGTGAAGATCAAAGGAACGAAGTAGCGGAAGTGTCACCGACAAGAGCAACTACTACTTCCAGTTCTAATCCATTAGTGAAGTTCAATATGATCAATGAAAGGGGTAATAGCTCAATCTCTCGGCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

185

Amino Acids

20.83

Weight (kDa)

5.66

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	30 - 106	3.8e-08	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	42 - 106	9.1e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47810
fragaria_vesca	FvH4_1g22110 FvH4_4g17750 FvH4_c6g00060
malus_domestica	MD03G1283700.v1.1 MD11G1302500.v1.1 MD13G1170200.v1.1 MD15G1334200.v1.1
prunus_persica	Prupe.1G138500_v2.0.a1 Prupe.6G175100_v2.0.a1 Prupe.8G256000_v2.0.a1
pyrus_communis	pycom03g22470 pycom15g29130
rosa_chinensis	RchiOBHm_Chr2g0116211 RchiOBHm_Chr4g0421711 RchiOBHm_Chr6g0293241
rosa_laevigata	RLG00000007656 RLG00000011965 RLG00000018246
rosa_multiflora	Rmu_co8397751.1_g000001 Rmu_sc0003499.1_g000007 Rmu_sc0004533.1_g000006 Rmu_ssc0000162.1_g000029
rosa_roxburghii	Rroxscaffold_2G00127430 Rroxscaffold_5G00363960 Rroxscaffold_7G00174320
rosa_rugosa	Rorug02G0204700 Rorug04G0175200 Rorug06G0233700
rosa_samantha	Rh2AG260400 Rh2BG271500 Rh2CG266600 Rh2DG268600 Rh4AG234200 Rh4BG237300 Rh4CG249100 Rh4DG233000 Rh6AG346600 Rh6BG354000 Rh6CG360500 Rh6DG347000
rosa_wichuraiana	Rw2G020410 Rw4G019980 Rw6G030170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
AciI	CCGC	4 cut(s)	350, 420, 423, 449
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	545
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	57, 327
AgsI	TTSAA	2 cut(s)	367, 508
AluBI	AGCT	2 cut(s)	237, 534
AluI	AGCT	2 cut(s)	237, 534
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	4 cut(s)	195, 312, 411, 545
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	5 cut(s)	92, 115, 301, 437, 450
AsuII	TTCGAA	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	99
BclI	TGATCA	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	125, 350, 421
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	3 cut(s)	126, 351, 422
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	348
BoxI	GACNNNNGTC	1 cut(s)	264
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 327
Bse1I	ACTGG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	57, 327
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	4 cut(s)	197, 314, 413, 547
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	57, 327
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsnI	GGCC	4 cut(s)	197, 314, 413, 547
Bsp119I	TTCGAA	1 cut(s)	188
Bsp143I	GATC	5 cut(s)	82, 118, 150, 430, 513
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	4 cut(s)	350, 420, 423, 449
BspANI	GGCC	4 cut(s)	197, 314, 413, 547
BspCNI	CTCAG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	158
BspT104I	TTCGAA	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	5 cut(s)	82, 118, 150, 430, 513
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	399
BstKTI	GATC	5 cut(s)	85, 121, 153, 433, 516
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	5 cut(s)	82, 118, 150, 430, 513
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstPAI	GACNNNNGTC	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	111
BsuRI	GGCC	4 cut(s)	197, 314, 413, 547
BveI	ACCTGC	1 cut(s)	68
CciI	TCATGA	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	312
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	154, 208
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	5 cut(s)	84, 120, 152, 432, 515
DpnII	GATC	5 cut(s)	82, 118, 150, 430, 513
EaeI	YGGCCR	1 cut(s)	545
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	2 cut(s)	157, 211
FaiI	YATR	3 cut(s)	155, 209, 512
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	2 cut(s)	153, 207
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	3 cut(s)	125, 350, 421
Fsp4HI	GCNGC	3 cut(s)	125, 350, 421
GluI	GCNGC	3 cut(s)	125, 350, 421
GsaI	CCCAGC	1 cut(s)	313
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	4 cut(s)	197, 314, 413, 547
HapII	CCGG	1 cut(s)	246
HgaI	GACGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	157, 211
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	5 cut(s)	92, 115, 301, 437, 450
Hpy188I	TCNGA	5 cut(s)	132, 150, 226, 259, 346
Hpy188III	TCNNGA	4 cut(s)	44, 51, 95, 154
Hpy99I	CGWCG	3 cut(s)	146, 302, 338
HpyAV	CCTTC	3 cut(s)	50, 176, 388
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	157, 211
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	5 cut(s)	82, 118, 150, 430, 513
LmnI	GCTCC	2 cut(s)	112, 346
LpnPI	CCDG	7 cut(s)	57, 63, 64, 259, 295, 361, 496
Lsp1109I	GCAGC	1 cut(s)	111
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	241, 266, 456
MalI	GATC	5 cut(s)	84, 120, 152, 432, 515
MboI	GATC	5 cut(s)	82, 118, 150, 430, 513
MboII	GAAGA	2 cut(s)	367, 440
MluCI	AATT	3 cut(s)	70, 183, 380
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	2 cut(s)	128, 282
MnlI	CCTC	6 cut(s)	14, 94, 187, 265, 351, 379
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	2 cut(s)	63, 108
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	2 cut(s)	352, 420
MspI	CCGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	5 cut(s)	82, 118, 150, 430, 513
NlaIII	CATG	2 cut(s)	157, 211
NlaIV	GGNNCC	1 cut(s)	348
NmeAIII	GCCGAG	1 cut(s)	523
NmuCI	GTSAC	3 cut(s)	241, 266, 456
NspV	TTCGAA	1 cut(s)	188
PagI	TCATGA	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	126, 351, 422
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PshAI	GACNNNNGTC	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	312
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	63, 108
SatI	GCNGC	3 cut(s)	125, 350, 421
Sau3AI	GATC	5 cut(s)	82, 118, 150, 430, 513
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	1 cut(s)	41
SetI	ASST	7 cut(s)	82, 105, 144, 239, 362, 374, 536
SfuI	TTCGAA	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	3 cut(s)	70, 183, 380
SsiI	CCGC	4 cut(s)	350, 420, 423, 449
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	188, 333
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	3 cut(s)	70, 183, 380
TauI	GCSGC	2 cut(s)	352, 423
Tru1I	TTAA	2 cut(s)	63, 108
Tru9I	TTAA	2 cut(s)	63, 108
TseFI	GTSAC	3 cut(s)	241, 266, 456
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	3 cut(s)	241, 266, 456
TspDTI	ATGAA	3 cut(s)	170, 220, 534
XapI	RAATTY	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.