Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003043

Physical Location & Seq

Genomic Coordinates Reverse (-)

166514 .. 168288

Gene Structure 1775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01435.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAATAGAGTTGTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCGAGCCCTTCTGGTCCCAAGAAAGAGTTCGTCAACAGCCATTGCCGAGAGTTTATGCAATCTATGAAGGATATACAAGTGACACTAAGGGAAGAGATCAAAAGCGCTTGCGAGTACCGTCCCTTTGAGAAATGCGATTACAACGCGAGAATAGCCAATGAGATCTGCTTCCAGAAGCTTGAATATGTTCTCACGCAGCTTGAAGATCTGAAACAAACTGCTGACCGGTATCCTTCTTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med11

Protein Analysis

115

Amino Acids

13.32

Weight (kDa)

5.09

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med11	PF10280	50 - 136	5.8e-15	Mediator complex protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01435 AT3G01435 AT3G01435 AT3G01435
fragaria_vesca	FvH4_2g07050 FvH4_2g07070
malus_domestica	MD10G1088300.v1.1
prunus_persica	Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G115200_v2.0.a1
pyrus_communis	pycom10g07060
rosa_chinensis	RchiOBHm_Chr6g0259451 RchiOBHm_Chr6g0259461 RchiOBHm_Chr7g0240711
rosa_laevigata	RLG00000000624 RLG00000014531 RLG00000014532 RLG00000014533
rosa_multiflora	Rmu_sc0006836.1_g000001 Rmu_sc0006836.1_g000005 Rmu_ssc0000050.1_g000040
rosa_roxburghii	Rroxscaffold_3G00219640 Rroxscaffold_7G00206730 Rroxscaffold_7G00206740
rosa_rugosa	Rorug05G0588800 Rorug05G0588900 Rorug07G0338400
rosa_samantha	Rh6AG104700 Rh6BG097800 Rh6CG093800 Rh6DG087700 Rh7AG493100 Rh7BG465100
rosa_wichuraiana	Rw6G009040 Rw6G009060 Rw6G009070 Rw7G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	104, 248
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	218
AfeI	AGCGCT	1 cut(s)	208
AgeI	ACCGGT	1 cut(s)	327
AgsI	TTSAA	2 cut(s)	284, 305
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	3 cut(s)	80, 280, 301
AluI	AGCT	3 cut(s)	80, 280, 301
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	31, 298
AsiGI	ACCGGT	1 cut(s)	327
Asp700I	GAANNNNTTC	2 cut(s)	128, 288
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	43, 310
BccI	CCATC	1 cut(s)	85
BciVI	GTATCC	1 cut(s)	342
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	342
BglII	AGATCT	2 cut(s)	264, 307
BisI	GCNGC	2 cut(s)	32, 299
BlsI	GCNGC	2 cut(s)	33, 300
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	6, 118
BpmI	CTGGAG	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	327
Bse118I	RCCGGY	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	43, 310
Bsh1236I	CGCG	2 cut(s)	104, 248
BshTI	ACCGGT	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	2 cut(s)	102, 207
BsmFI	GGGAC	2 cut(s)	102, 207
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	4 cut(s)	4, 198, 264, 307
Bsp68I	TCGCGA	1 cut(s)	104
BspACI	CCGC	1 cut(s)	8
BspFNI	CGCG	2 cut(s)	104, 248
BspLI	GGNNCC	2 cut(s)	6, 118
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	327
BssMI	GATC	4 cut(s)	4, 198, 264, 307
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	106, 211
BstDEI	CTNAG	1 cut(s)	188
BstFNI	CGCG	2 cut(s)	104, 248
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	4 cut(s)	7, 201, 267, 310
BstMBI	GATC	4 cut(s)	4, 198, 264, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstUI	CGCG	2 cut(s)	104, 248
BstV1I	GCAGC	2 cut(s)	43, 310
BstX2I	RGATCY	3 cut(s)	4, 264, 307
BstYI	RGATCY	3 cut(s)	4, 264, 307
BsuI	GTATCC	1 cut(s)	342
BtuMI	TCGCGA	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	106, 211
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	217
CspAI	ACCGGT	1 cut(s)	327
CviJI	RGCY	6 cut(s)	80, 108, 141, 257, 280, 301
CviKI_1	RGCY	6 cut(s)	80, 108, 141, 257, 280, 301
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	4 cut(s)	6, 200, 266, 309
DpnII	GATC	4 cut(s)	4, 198, 264, 307
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	116
Eco47III	AGCGCT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	110
FaiI	YATR	4 cut(s)	158, 167, 176, 288
FaqI	GGGAC	2 cut(s)	102, 207
Fnu4HI	GCNGC	2 cut(s)	32, 299
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	32, 299
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	2 cut(s)	32, 299
GsuI	CTGGAG	1 cut(s)	23
HaeII	RGCGCY	1 cut(s)	210
HapII	CCGG	1 cut(s)	328
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	328
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	312, 343
Hpy188III	TCNNGA	3 cut(s)	40, 103, 274
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	120, 163, 345
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	31, 160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	188
HspAI	GCGC	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	4, 198, 264, 307
LpnPI	CCDG	5 cut(s)	53, 66, 99, 287, 341
Lsp1109I	GCAGC	2 cut(s)	43, 310
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	4 cut(s)	6, 200, 266, 309
MboI	GATC	4 cut(s)	4, 198, 264, 307
MboII	GAAGA	4 cut(s)	107, 206, 317, 330
MflI	RGATCY	3 cut(s)	4, 264, 307
MhlI	GDGCHC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	30
MroXI	GAANNNNTTC	2 cut(s)	128, 288
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	328
MvnI	CGCG	2 cut(s)	104, 248
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	4 cut(s)	4, 198, 264, 307
NlaIV	GGNNCC	2 cut(s)	6, 118
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	181
NruI	TCGCGA	1 cut(s)	104
PdmI	GAANNNNTTC	2 cut(s)	128, 288
PinAI	ACCGGT	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	33, 300
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	6, 118
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	3 cut(s)	4, 264, 307
RruI	TCGCGA	1 cut(s)	104
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	32, 299
Sau3AI	GATC	4 cut(s)	4, 198, 264, 307
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	4 cut(s)	69, 82, 282, 303
SinI	GGWCC	1 cut(s)	116
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	31, 298
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	116
XmnI	GAANNNNTTC	2 cut(s)	128, 288
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.