Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003043

Physical Location & Seq

Genomic Coordinates Reverse (-)

14251823 .. 14253565

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAACCCCATGGATTCACAGACCCAGAACACCTCGTTGCAGAGGCTTCAAAATGTGGAGAAAAGAATCGTTAAGGTTTTGGAGCTAGCTGGAGGTGTCATGGACGAGCTTGCAAACCCTAGTGGTCCCAGAAAGGAGTTTATCAACAACCATTGCCGTGAGTTCATGCAATTGATCAAGGATATTCAGGTGGCACTGCGGGATGAAATTAAAAGTGCATGTGATTACCGTCCGTTTGAGAAGTGTGATTACAGTTCAAGAGTAGCTAATGAAATCTGTTGCAAGAAACTGGAATATGTCATGTCACAGTTGGATGCAATGAAAGAAACAATGGATGAATATCATAATGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med11

Protein Analysis

119

Amino Acids

13.68

Weight (kDa)

5.41

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01435 AT3G01435 AT3G01435 AT3G01435
fragaria_vesca	FvH4_2g07050 FvH4_2g07070
malus_domestica	MD10G1088300.v1.1
prunus_persica	Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G115200_v2.0.a1
pyrus_communis	pycom10g07060
rosa_chinensis	RchiOBHm_Chr6g0259451 RchiOBHm_Chr6g0259461 RchiOBHm_Chr7g0240711
rosa_laevigata	RLG00000000624 RLG00000014531 RLG00000014532 RLG00000014533
rosa_multiflora	Rmu_sc0006836.1_g000001 Rmu_sc0006836.1_g000005 Rmu_ssc0000050.1_g000040
rosa_roxburghii	Rroxscaffold_3G00219640 Rroxscaffold_7G00206730 Rroxscaffold_7G00206740
rosa_rugosa	Rorug05G0588800 Rorug05G0588900 Rorug07G0338400
rosa_samantha	Rh6AG104700 Rh6BG097800 Rh6CG093800 Rh6DG087700 Rh7AG493100 Rh7BG465100
rosa_wichuraiana	Rw6G009040 Rw6G009060 Rw6G009070 Rw7G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	50, 258
AluBI	AGCT	4 cut(s)	85, 89, 109, 266
AluI	AGCT	4 cut(s)	85, 89, 109, 266
AspS9I	GGNCC	1 cut(s)	125
AsuNHI	GCTAGC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BceAI	ACGGC	1 cut(s)	141
BclI	TGATCA	1 cut(s)	174
BfaI	CTAG	2 cut(s)	86, 120
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	304
BmtI	GCTAGC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	9
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	2 cut(s)	151, 324
Bse8I	GATNNNNATC	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	3 cut(s)	208, 319, 340
BseJI	GATNNNNATC	1 cut(s)	339
BseMI	GCAATG	2 cut(s)	151, 324
BseNI	ACTGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	127
BspOI	GCTAGC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	151, 324
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	3 cut(s)	230, 254, 309
BstC8I	GCNNGC	2 cut(s)	87, 111
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	208, 319, 340
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	208, 319, 340
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	87, 111
Cfr13I	GGNCC	1 cut(s)	125
CviAII	CATG	5 cut(s)	10, 100, 166, 219, 301
CviJI	RGCY	5 cut(s)	46, 85, 89, 109, 266
CviKI_1	RGCY	5 cut(s)	46, 85, 89, 109, 266
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	5 cut(s)	13, 103, 169, 222, 304
FaiI	YATR	7 cut(s)	11, 101, 167, 220, 297, 302, 345
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	5 cut(s)	9, 99, 165, 218, 300
FauI	CCCGC	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	174
FokI	GGATG	3 cut(s)	215, 326, 347
FspBI	CTAG	2 cut(s)	86, 120
GsuI	CTGGAG	1 cut(s)	111
Hin1II	CATG	5 cut(s)	13, 103, 169, 222, 304
HinfI	GANTC	2 cut(s)	14, 66
Hpy188III	TCNNGA	1 cut(s)	258
HpyCH4III	ACNGT	3 cut(s)	230, 254, 309
HpyCH4V	TGCA	6 cut(s)	40, 113, 169, 218, 282, 317
Hsp92II	CATG	5 cut(s)	13, 103, 169, 222, 304
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	38, 75, 142, 173, 275
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	86, 120
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MfeI	CAATTG	1 cut(s)	170
MluCI	AATT	2 cut(s)	170, 207
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	3 cut(s)	36, 43, 86
MseI	TTAA	2 cut(s)	72, 210
MslI	CAYNNNNRTG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	174
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	5 cut(s)	13, 103, 169, 222, 304
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	303
NspI	RCATGY	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	14, 66
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	72, 210
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	125
SetI	ASST	8 cut(s)	35, 78, 87, 91, 97, 111, 192, 268
SfaNI	GCATC	1 cut(s)	304
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	2 cut(s)	170, 207
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	2 cut(s)	86, 120
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	230, 254, 309
TasI	AATT	2 cut(s)	170, 207
TfiI	GAWTC	2 cut(s)	14, 66
Tru1I	TTAA	2 cut(s)	72, 210
Tru9I	TTAA	2 cut(s)	72, 210
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	303
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	6 cut(s)	17, 154, 219, 285, 335, 351
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	125
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	2 cut(s)	86, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.