Rw6G009040

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003043
Physical Location & Seq
Forward (+)
15250352 .. 15251262
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009040.1

Sequence Viewer

Length: 456 bp
CTGTTTGGTAAATTGGAGACTGAAGTTGAAATCAACGCTCCGGCTGCCAAGTACCACGAACTCTTCACGCGCCGGCCACACCATCTTTCCAATATCAGTCCCGATAAAATTCAGAGCTGTGAGTTACTTGAAGGTCAATGGGGAGATCTGGGTTCGGTCATCTACTGGAATTATTGCTATGATGGGAAAACTACAGTGGCTACAGACTTGATTGAAGCCGTAGACGACGAAAAGAATTCTGTGACCTTCAAAGTCATTGATGGACCTCTTCTGGAGCACTACAAGAGCTTCAGGCTCATTGTCGAAGCTACTCCGAAAGGTGATCGGAACAGCTTGGTTCATCTGATTGTGGAATATGAAAAGCTTCACGACCAAGTTTCAGACCCGCATAGCTTGCTCCAGTTTGTAGCTGATCTCTCTAAAGATATGGGTGCTCACCTCAGTACTCAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

151

Amino Acids

17.08

Weight (kDa)

5.13

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 3 - 148 1.3e-48 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 70
AciI CCGC 1 cut(s) 386
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 2 cut(s) 108, 235
AcuI CTGAAG 2 cut(s) 42, 274
AfaI GTAC 2 cut(s) 53, 445
AgsI TTSAA 4 cut(s) 29, 131, 215, 250
AluBI AGCT 7 cut(s) 117, 288, 308, 333, 364, 393, 410
AluI AGCT 7 cut(s) 117, 288, 308, 333, 364, 393, 410
Alw21I GWGCWC 2 cut(s) 279, 436
Alw26I GTCTC 1 cut(s) 11
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 2 cut(s) 108, 235
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 332, 428
AvaII GGWCC 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 279, 436
BbvI GCAGC 1 cut(s) 31
BccI CCATC 3 cut(s) 90, 176, 254
BceAI ACGGC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 11
BfmI CTRYAG 2 cut(s) 192, 201
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 445
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BpmI CTGGAG 2 cut(s) 293, 383
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 170, 400
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 2 cut(s) 170, 400
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 76
BsiHKAI GWGCWC 2 cut(s) 279, 436
BsiSI CCGG 2 cut(s) 41, 73
BslFI GGGAC 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 279, 436
Bsp143I GATC 3 cut(s) 145, 322, 412
BspACI CCGC 1 cut(s) 386
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 453
BspFNI CGCG 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 2 cut(s) 170, 400
BssAI RCCGGY 1 cut(s) 72
BssMI GATC 3 cut(s) 145, 322, 412
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 68, 273
BstAPI GCANNNNNTGC 1 cut(s) 394
BstC8I GCNNGC 2 cut(s) 74, 395
BstDEI CTNAG 1 cut(s) 440
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 148, 325, 415
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 145, 322, 412
BstMWI GCNNNNNNNGC 2 cut(s) 44, 394
BstSFI CTRYAG 2 cut(s) 192, 201
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 74, 395
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 52, 444
CviQI GTAC 2 cut(s) 52, 444
DdeI CTNAG 1 cut(s) 440
DpnI GATC 3 cut(s) 147, 324, 414
DpnII GATC 3 cut(s) 145, 322, 412
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 68, 273
EarI CTCTTC 2 cut(s) 68, 273
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 42, 274
EcoRI GAATTC 1 cut(s) 235
FaiI YATR 5 cut(s) 180, 357, 390, 428, 454
FaqI GGGAC 1 cut(s) 84
FauI CCCGC 1 cut(s) 393
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 2 cut(s) 293, 383
HaeIII GGCC 1 cut(s) 76
HapII CCGG 2 cut(s) 41, 73
HhaI GCGC 1 cut(s) 72
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 362
HpaII CCGG 2 cut(s) 41, 73
HphI GGTGA 2 cut(s) 332, 428
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 5 cut(s) 114, 315, 327, 345, 382
Hpy188III TCNNGA 3 cut(s) 101, 272, 368
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 125, 256
HpyCH4III ACNGT 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 394
HpyF3I CTNAG 1 cut(s) 440
HspAI GCGC 1 cut(s) 70
KroI GCCGGC 1 cut(s) 72
KroNI GCCGGC 1 cut(s) 74
Kzo9I GATC 3 cut(s) 145, 322, 412
LmnI GCTCC 3 cut(s) 43, 274, 402
LpnPI CCDG 7 cut(s) 54, 86, 134, 151, 257, 277, 413
Lsp1109I GCAGC 1 cut(s) 31
MaeIII GTNAC 2 cut(s) 123, 241
MalI GATC 3 cut(s) 147, 324, 414
MboI GATC 3 cut(s) 145, 322, 412
MboII GAAGA 2 cut(s) 55, 260
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 279, 436
MluCI AATT 4 cut(s) 11, 108, 169, 235
MnlI CCTC 2 cut(s) 276, 449
MroNI GCCGGC 1 cut(s) 72
MroXI GAANNNNTTC 1 cut(s) 363
MspI CCGG 2 cut(s) 41, 73
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 44, 394
NaeI GCCGGC 1 cut(s) 74
NdeII GATC 3 cut(s) 145, 322, 412
NgoMIV GCCGGC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 363
PkrI GCNGC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 2 cut(s) 53, 445
RsaNI GTAC 2 cut(s) 52, 444
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 145, 322, 412
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 445
SduI GDGCHC 2 cut(s) 279, 436
SfcI CTRYAG 2 cut(s) 192, 201
SinI GGWCC 1 cut(s) 263
Sse9I AATT 4 cut(s) 11, 108, 169, 235
SsiI CCGC 1 cut(s) 386
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 303
TaqII GACCGA 1 cut(s) 145
TasI AATT 4 cut(s) 11, 108, 169, 235
TatI WGTACW 1 cut(s) 443
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 329, 372
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 2 cut(s) 108, 235
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.