Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003043

Physical Location & Seq

Genomic Coordinates Forward (+)

78713787 .. 78718846

Gene Structure 5060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0588900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATTCGGTCCCGTCGAACTCGCTTGGGAACCTCGACGAGCAGATTGCTCAGCTCATGCAGTGCAAGCCTTTGTCCGAACAAGAGGTAAGGGGGCTCTGTGAAAAGGCTAAGGAGATATTGATGGAAGAAAGCAACGTTCAGCCTGTGAAAAGCCCAGTAACTATTTGCGGTGATATTCATGGACAATTTCATGATCTTGCCGAGCTTTTCCGTATTGGAGGAAAGTGTCCAGATACCAATTATTTGTTTATGGGAGATTATGTCGATCGTGGCTATTATTCCGTTGAAACCGTAACACTTTTGGTGGCCTTGAAGGTTCGTTACTCTCAACGTATAACTATCCTAAGAGGGAATCATGAAAGTCGTCAGATTACTCAAGTTTATGGTTTTTATGACGAGTGCTTACGGAAGTATGGTAATGCCAATGTTTGGAAGACCTTTACTGATTTATTTGACTATTTTCCGCTGACAGCTTTGGTTGAATCTGAAATCTTCTGCTTGCACGGCGGACTTTCTCCCTCAATTGAAACCCTTGATAACATACGTAATTTTGACCGTGTTCAAGAGGTTCCACATGAAGGTCCCATGTGTGATCTTCTTTGGTCTGACCCGGATGATCGCTGTGGCTGGGGTATCTCTCCCAGAGGTGCTGGATATACTTTTGGCCAGGACATATCTGAGCAGTTCAATCATACCAATAACTTGAAGTTGATTGCTAGAGCACACCAGCTGGTCATGGAAGGTTATAACTGGGGTCATGAACAAAAAGTTGTCACCATATTCAGTGCACCTAACTACTGTTACCGCTGTGGAAATATGGCATCAATCCTAGAAGTCGATGACTGCAAAGGTCACACATTCATTCAGTTTGAGCCAGCTCCAAGGAGGGGAGAGCCAGATGTTACCCGAAGAACACCTGATTATTTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med11

Protein Analysis

311

Amino Acids

35.49

Weight (kDa)

5.08

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	53 - 246	2.3e-47	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01435 AT3G01435 AT3G01435 AT3G01435
fragaria_vesca	FvH4_2g07050 FvH4_2g07070
malus_domestica	MD10G1088300.v1.1
prunus_persica	Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G115200_v2.0.a1
pyrus_communis	pycom10g07060
rosa_chinensis	RchiOBHm_Chr6g0259451 RchiOBHm_Chr6g0259461 RchiOBHm_Chr7g0240711
rosa_laevigata	RLG00000000624 RLG00000014531 RLG00000014532 RLG00000014533
rosa_multiflora	Rmu_sc0006836.1_g000001 Rmu_sc0006836.1_g000005 Rmu_ssc0000050.1_g000040
rosa_roxburghii	Rroxscaffold_3G00219640 Rroxscaffold_7G00206730 Rroxscaffold_7G00206740
rosa_rugosa	Rorug05G0588800 Rorug05G0588900 Rorug07G0338400
rosa_samantha	Rh6AG104700 Rh6BG097800 Rh6CG093800 Rh6DG087700 Rh7AG493100 Rh7BG465100
rosa_wichuraiana	Rw6G009040 Rw6G009060 Rw6G009070 Rw7G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccB7I	CCANNNNNTGG	1 cut(s)	432
AciI	CCGC	4 cut(s)	171, 467, 510, 808
AclI	AACGTT	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	667
AfiI	CCNNNNNNNGG	3 cut(s)	432, 581, 890
AgsI	TTSAA	7 cut(s)	290, 316, 485, 530, 566, 691, 709
AjnI	CCWGG	1 cut(s)	669
AluBI	AGCT	5 cut(s)	55, 208, 476, 733, 881
AluI	AGCT	5 cut(s)	55, 208, 476, 733, 881
Alw21I	GWGCWC	2 cut(s)	727, 793
Alw44I	GTGCAC	1 cut(s)	789
AoxI	GGCC	2 cut(s)	309, 667
ApaLI	GTGCAC	1 cut(s)	789
AspS9I	GGNCC	2 cut(s)	10, 584
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	2 cut(s)	185, 769
AvaII	GGWCC	2 cut(s)	10, 584
BaeGI	GKGCMC	1 cut(s)	793
BalI	TGGCCA	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	2 cut(s)	727, 793
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	523
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BciT130I	CCWGG	1 cut(s)	671
BcnI	CCSGG	1 cut(s)	614
BfaI	CTAG	2 cut(s)	720, 833
BlpI	GCTNAGC	1 cut(s)	51
Bme1390I	CCNGG	2 cut(s)	614, 671
Bme18I	GGWCC	2 cut(s)	10, 584
BmgT120I	GGNCC	2 cut(s)	10, 584
BmiI	GGNNCC	4 cut(s)	12, 32, 573, 586
BmrFI	CCNGG	2 cut(s)	614, 671
BmrI	ACTGGG	2 cut(s)	152, 763
BmsI	GCATC	1 cut(s)	833
BmuI	ACTGGG	2 cut(s)	152, 763
BpiI	GAAGAC	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	614
BsaAI	YACGTR	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	884
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 581, 890
Bse1I	ACTGG	2 cut(s)	158, 758
BseBI	CCWGG	1 cut(s)	671
BseDI	CCNNGG	1 cut(s)	884
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	3 cut(s)	432, 581, 890
BseMII	CTCAG	2 cut(s)	65, 672
BseNI	ACTGG	2 cut(s)	158, 758
BseSI	GKGCMC	1 cut(s)	793
BseYI	CCCAGC	1 cut(s)	630
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	311, 669
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	727, 793
BsiSI	CCGG	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	3 cut(s)	432, 581, 890
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	2 cut(s)	311, 669
Bsp1286I	GDGCHC	3 cut(s)	99, 727, 793
Bsp143I	GATC	4 cut(s)	196, 268, 595, 619
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	4 cut(s)	171, 467, 510, 808
BspANI	GGCC	2 cut(s)	311, 669
BspCNI	CTCAG	2 cut(s)	64, 673
BspHI	TCATGA	3 cut(s)	193, 358, 760
BspLI	GGNNCC	4 cut(s)	12, 32, 573, 586
BsrI	ACTGG	2 cut(s)	158, 758
BssECI	CCNNGG	1 cut(s)	884
BssMI	GATC	4 cut(s)	196, 268, 595, 619
BssT1I	CCWWGG	1 cut(s)	884
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	3 cut(s)	295, 560, 803
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	3 cut(s)	68, 503, 879
BstDEI	CTNAG	4 cut(s)	51, 111, 347, 681
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	4 cut(s)	199, 271, 598, 622
BstMBI	GATC	4 cut(s)	196, 268, 595, 619
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 507
BstNI	CCWGG	1 cut(s)	671
BstSCI	CCNGG	2 cut(s)	612, 669
BstSLI	GKGCMC	1 cut(s)	793
BstSNI	TACGTA	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	311, 669
BtsCI	GGATG	1 cut(s)	622
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 793
Cac8I	GCNNGC	3 cut(s)	68, 503, 879
CciI	TCATGA	3 cut(s)	193, 358, 760
Cfr13I	GGNCC	2 cut(s)	10, 584
CviAII	CATG	8 cut(s)	58, 182, 194, 359, 578, 589, 739, 761
DdeI	CTNAG	4 cut(s)	51, 111, 347, 681
DpnI	GATC	4 cut(s)	198, 270, 597, 621
DpnII	GATC	4 cut(s)	196, 268, 595, 619
EaeI	YGGCCR	1 cut(s)	667
EciI	GGCGGA	1 cut(s)	525
Eco105I	TACGTA	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	884
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	10, 584
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	884
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	884
FaeI	CATG	8 cut(s)	61, 185, 197, 362, 581, 592, 742, 764
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	8 cut(s)	57, 181, 193, 358, 577, 588, 738, 760
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	720, 833
GsaI	CCCAGC	1 cut(s)	634
HaeIII	GGCC	2 cut(s)	311, 669
HapII	CCGG	1 cut(s)	614
Hin1II	CATG	8 cut(s)	61, 185, 197, 362, 581, 592, 742, 764
HinfI	GANTC	3 cut(s)	5, 355, 485
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	2 cut(s)	185, 769
Hpy166II	GTNNAC	1 cut(s)	791
Hpy188I	TCNGA	5 cut(s)	79, 372, 490, 610, 682
Hpy188III	TCNNGA	5 cut(s)	194, 233, 359, 566, 761
Hpy8I	GTNNAC	1 cut(s)	791
Hpy99I	CGWCG	2 cut(s)	19, 41
HpyAV	CCTTC	3 cut(s)	310, 575, 737
HpyCH4III	ACNGT	3 cut(s)	295, 560, 803
HpyCH4IV	ACGT	3 cut(s)	138, 334, 547
HpyCH4V	TGCA	5 cut(s)	61, 66, 505, 791, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 507
HpyF3I	CTNAG	4 cut(s)	51, 111, 347, 681
HpySE526I	ACGT	3 cut(s)	138, 334, 547
Hsp92II	CATG	8 cut(s)	61, 185, 197, 362, 581, 592, 742, 764
Kzo9I	GATC	4 cut(s)	196, 268, 595, 619
LmnI	GCTCC	1 cut(s)	886
LweI	GCATC	1 cut(s)	833
MaeI	CTAG	2 cut(s)	720, 833
MaeII	ACGT	3 cut(s)	138, 334, 547
MaeIII	GTNAC	7 cut(s)	160, 295, 323, 775, 803, 854, 904
MalI	GATC	4 cut(s)	198, 270, 597, 621
MboI	GATC	4 cut(s)	196, 268, 595, 619
MboII	GAAGA	5 cut(s)	140, 448, 487, 590, 924
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	3 cut(s)	99, 727, 793
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	4 cut(s)	188, 241, 525, 550
MluNI	TGGCCA	1 cut(s)	669
MnlI	CCTC	8 cut(s)	44, 79, 215, 344, 532, 562, 641, 882
Mox20I	TGGCCA	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	669
Msp20I	TGGCCA	1 cut(s)	669
MspA1I	CMGCKG	3 cut(s)	469, 733, 810
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	2 cut(s)	614, 671
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	671
MwoI	GCNNNNNNNGC	2 cut(s)	67, 507
NciI	CCSGG	1 cut(s)	614
NdeII	GATC	4 cut(s)	196, 268, 595, 619
NlaIII	CATG	8 cut(s)	61, 185, 197, 362, 581, 592, 742, 764
NlaIV	GGNNCC	4 cut(s)	12, 32, 573, 586
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	2 cut(s)	775, 854
PagI	TCATGA	3 cut(s)	193, 358, 760
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	5, 355, 485
PflMI	CCANNNNNTGG	1 cut(s)	432
Ple19I	CGATCG	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	548
PpuMI	RGGWCCY	1 cut(s)	584
PsiI	TTATAA	1 cut(s)	750
Psp1406I	AACGTT	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	669
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	4 cut(s)	12, 32, 573, 586
PspPI	GGNCC	2 cut(s)	10, 584
PspPPI	RGGWCCY	1 cut(s)	584
PvuI	CGATCG	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	733
Sau3AI	GATC	4 cut(s)	196, 268, 595, 619
Sau96I	GGNCC	2 cut(s)	10, 584
ScrFI	CCNGG	2 cut(s)	614, 671
SduI	GDGCHC	3 cut(s)	99, 727, 793
SfaNI	GCATC	1 cut(s)	833
SinI	GGWCC	2 cut(s)	10, 584
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	548
Sse9I	AATT	4 cut(s)	188, 241, 525, 550
SsiI	CCGC	4 cut(s)	171, 467, 510, 808
SspMI	CTAG	2 cut(s)	720, 833
StyD4I	CCNGG	2 cut(s)	612, 669
StyI	CCWWGG	1 cut(s)	884
TaaI	ACNGT	3 cut(s)	295, 560, 803
TaiI	ACGT	3 cut(s)	141, 337, 550
TaqI	TCGA	4 cut(s)	17, 36, 267, 840
TasI	AATT	4 cut(s)	188, 241, 525, 550
TfiI	GAWTC	3 cut(s)	5, 355, 485
TscAI	CASTG	2 cut(s)	68, 793
TseFI	GTSAC	2 cut(s)	775, 854
Tsp45I	GTSAC	2 cut(s)	775, 854
TspDTI	ATGAA	6 cut(s)	170, 182, 375, 594, 777, 853
TspGWI	ACGGA	3 cut(s)	203, 274, 424
TspRI	CASTG	2 cut(s)	68, 793
Van91I	CCANNNNNTGG	1 cut(s)	432
VneI	GTGCAC	1 cut(s)	789
VpaK11BI	GGWCC	2 cut(s)	10, 584
XspI	CTAG	2 cut(s)	720, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.