Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006836.1

Orthogroup ID

OG0003043

Physical Location & Seq

Genomic Coordinates Reverse (-)

957 .. 4481

Gene Structure 3525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006836.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgtcgtcggagcagtttggtaagttggagactgaagttgaaatcaacgctccggctgccaagtaccacgaactcttcacgcgccggccacaccatctttccaatatcagtcccgataaaattcagagctgtgagttacttgaaggtcaatggggagatctgggttcggtcatctactggaattattgctatgatgggaaaactacagtgtctacagacttgattgaagccgtagacgacgaaaagaattctgtgaccttcaaagtcattgatggacctcttctggagcactacaagagcttcaggctcattgtcgaagctactccgaaaggtgatcggaacagcttggttcatctgattgtggaatatgaaaagcttcacgaccaagtttcagacccgcatagcttgctccagtttgtagctgatctctccaaagatatgggtgctcacctcggccaacaaaccttgcaccagacccaccaccgtggcatcaccggttccgtcgtactgcctccagacaaccaccgccctagtaagtccaccgccggcgctccaccatcgtcgccccacacaccaaggtctccaccaaggagtgctcgcagagaaagccggaaaagatttcttctggtttctcaatcaaacgccatggattctcagacccagaacacgtcgttgcagaggcttcaaaatgtggagaagagaatcgtgaaggttttggagctggccggaagtgtgatggacgagcttgcaaaccctacgggtcccagaagggaggccatcaacaaccatgtccgcgagttcatgcaattgatcaaggatattcaagtggcattgcgggatgaaatcaaaagtgcgtgtgattaccgtccatttgagaagtgtgattacagttcgagaatagctaacgagatctgttgcaagaaactggaatatgtcatgtcacagttggatggaatgaaagaaacaatagatgattatcatactgctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

330

Amino Acids

37.36

Weight (kDa)

6.21

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01435 AT3G01435 AT3G01435 AT3G01435
fragaria_vesca	FvH4_2g07050 FvH4_2g07070
malus_domestica	MD10G1088300.v1.1
prunus_persica	Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G115200_v2.0.a1
pyrus_communis	pycom10g07060
rosa_chinensis	RchiOBHm_Chr6g0259451 RchiOBHm_Chr6g0259461 RchiOBHm_Chr7g0240711
rosa_laevigata	RLG00000000624 RLG00000014531 RLG00000014532 RLG00000014533
rosa_multiflora	Rmu_sc0006836.1_g000001 Rmu_sc0006836.1_g000005 Rmu_ssc0000050.1_g000040
rosa_roxburghii	Rroxscaffold_3G00219640 Rroxscaffold_7G00206730 Rroxscaffold_7G00206740
rosa_rugosa	Rorug05G0588800 Rorug05G0588900 Rorug07G0338400
rosa_samantha	Rh6AG104700 Rh6BG097800 Rh6CG093800 Rh6DG087700 Rh7AG493100 Rh7BG465100
rosa_wichuraiana	Rw6G009040 Rw6G009060 Rw6G009070 Rw7G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	212, 234
AccII	CGCG	2 cut(s)	82, 795
AciI	CCGC	5 cut(s)	398, 526, 543, 793, 835
AcoI	YGGCCR	3 cut(s)	86, 454, 723
AcsI	RAATTY	2 cut(s)	120, 247
AcuI	CTGAAG	2 cut(s)	54, 286
AfaI	GTAC	2 cut(s)	65, 507
AflIII	ACRYGT	1 cut(s)	666
AgeI	ACCGGT	1 cut(s)	494
AgsI	TTSAA	6 cut(s)	41, 143, 227, 262, 686, 824
AjiI	CACGTC	1 cut(s)	669
AleI	CACNNNNGTG	1 cut(s)	483
Alw21I	GWGCWC	3 cut(s)	291, 448, 598
Alw26I	GTCTC	2 cut(s)	23, 585
AoxI	GGCC	4 cut(s)	86, 454, 723, 774
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	120, 247
AsiGI	ACCGGT	1 cut(s)	494
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	2 cut(s)	84, 551
AspS9I	GGNCC	2 cut(s)	275, 761
AsuHPI	GGTGA	3 cut(s)	344, 440, 484
AvaII	GGWCC	2 cut(s)	275, 761
BarI	GAAGNNNNNNTAC	2 cut(s)	869, 901
Bbv12I	GWGCWC	3 cut(s)	291, 448, 598
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	7 cut(s)	102, 188, 266, 565, 730, 785, 944
BceAI	ACGGC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	810
BcoDI	GTCTC	2 cut(s)	23, 585
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	2 cut(s)	204, 213
BfoI	RGCGCY	1 cut(s)	552
BglII	AGATCT	2 cut(s)	157, 909
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	275, 761
BmgBI	CACGTC	1 cut(s)	669
BmgT120I	GGNCC	2 cut(s)	275, 761
BmiI	GGNNCC	3 cut(s)	499, 762, 763
BmsI	GCATC	1 cut(s)	498
BpmI	CTGGAG	3 cut(s)	305, 395, 498
BsaBI	GATNNNNATC	1 cut(s)	975
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	5 cut(s)	451, 484, 575, 587, 645
BsaWI	WCCGGW	1 cut(s)	494
Bse118I	RCCGGY	3 cut(s)	84, 494, 545
Bse1I	ACTGG	3 cut(s)	182, 412, 930
Bse3DI	GCAATG	1 cut(s)	830
Bse8I	GATNNNNATC	1 cut(s)	975
BseDI	CCNNGG	5 cut(s)	451, 484, 575, 587, 645
BseGI	GGATG	2 cut(s)	844, 955
BseJI	GATNNNNATC	1 cut(s)	975
BseMI	GCAATG	1 cut(s)	830
BseMII	CTCAG	1 cut(s)	668
BseNI	ACTGG	3 cut(s)	182, 412, 930
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	2 cut(s)	82, 795
BshFI	GGCC	4 cut(s)	88, 456, 725, 776
BshTI	ACCGGT	1 cut(s)	494
BsiHKAI	GWGCWC	3 cut(s)	291, 448, 598
BsiSI	CCGG	6 cut(s)	53, 85, 495, 546, 610, 726
BslFI	GGGAC	2 cut(s)	96, 747
BsmAI	GTCTC	2 cut(s)	23, 585
BsmFI	GGGAC	2 cut(s)	96, 747
BsnI	GGCC	4 cut(s)	88, 456, 725, 776
Bso31I	GGTCTC	1 cut(s)	585
Bsp1286I	GDGCHC	3 cut(s)	291, 448, 598
Bsp143I	GATC	5 cut(s)	157, 334, 424, 810, 909
Bsp19I	CCATGG	1 cut(s)	645
BspACI	CCGC	5 cut(s)	398, 526, 543, 793, 835
BspANI	GGCC	4 cut(s)	88, 456, 725, 776
BspCNI	CTCAG	1 cut(s)	667
BspFNI	CGCG	2 cut(s)	82, 795
BspLI	GGNNCC	3 cut(s)	499, 762, 763
BspTNI	GGTCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	830
BsrFI	RCCGGY	3 cut(s)	84, 494, 545
BsrI	ACTGG	3 cut(s)	182, 412, 930
BssAI	RCCGGY	3 cut(s)	84, 494, 545
BssECI	CCNNGG	5 cut(s)	451, 484, 575, 587, 645
BssMI	GATC	5 cut(s)	157, 334, 424, 810, 909
BssT1I	CCWWGG	3 cut(s)	575, 587, 645
Bst4CI	ACNGT	5 cut(s)	208, 485, 866, 890, 945
Bst6I	CTCTTC	3 cut(s)	80, 285, 692
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstC8I	GCNNGC	6 cut(s)	86, 407, 547, 598, 723, 747
BstDEI	CTNAG	1 cut(s)	654
BstDSI	CCRYGG	2 cut(s)	484, 645
BstF5I	GGATG	2 cut(s)	844, 955
BstFNI	CGCG	2 cut(s)	82, 795
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	2 cut(s)	84, 551
BstKTI	GATC	5 cut(s)	160, 337, 427, 813, 912
BstMAI	GTCTC	2 cut(s)	23, 585
BstMBI	GATC	5 cut(s)	157, 334, 424, 810, 909
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 406, 606
BstSFI	CTRYAG	2 cut(s)	204, 213
BstUI	CGCG	2 cut(s)	82, 795
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	157, 909
BstXI	CCANNNNNNTGG	2 cut(s)	439, 485
BstYI	RGATCY	2 cut(s)	157, 909
BsuRI	GGCC	4 cut(s)	88, 456, 725, 776
BtgI	CCRYGG	2 cut(s)	484, 645
BtrI	CACGTC	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	844, 955
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	6 cut(s)	86, 407, 547, 598, 723, 747
CfoI	GCGC	2 cut(s)	84, 551
Cfr10I	RCCGGY	3 cut(s)	84, 494, 545
Cfr13I	GGNCC	2 cut(s)	275, 761
Csp6I	GTAC	2 cut(s)	64, 506
CspAI	ACCGGT	1 cut(s)	494
CviAII	CATG	4 cut(s)	646, 788, 802, 937
CviQI	GTAC	2 cut(s)	64, 506
DdeI	CTNAG	1 cut(s)	654
DpnI	GATC	5 cut(s)	159, 336, 426, 812, 911
DpnII	GATC	5 cut(s)	157, 334, 424, 810, 909
EaeI	YGGCCR	3 cut(s)	86, 454, 723
Eam1104I	CTCTTC	3 cut(s)	80, 285, 692
EarI	CTCTTC	3 cut(s)	80, 285, 692
Eco130I	CCWWGG	3 cut(s)	575, 587, 645
Eco31I	GGTCTC	1 cut(s)	585
Eco47I	GGWCC	2 cut(s)	275, 761
Eco57I	CTGAAG	2 cut(s)	54, 286
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	247
EcoT14I	CCWWGG	3 cut(s)	575, 587, 645
ErhI	CCWWGG	3 cut(s)	575, 587, 645
FaeI	CATG	4 cut(s)	649, 791, 805, 940
FaqI	GGGAC	2 cut(s)	96, 747
FatI	CATG	4 cut(s)	645, 787, 801, 936
FauI	CCCGC	2 cut(s)	405, 828
FbaI	TGATCA	1 cut(s)	810
FblI	GTMKAC	2 cut(s)	212, 234
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	851, 962
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	531
GlaI	GCGC	2 cut(s)	83, 550
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	3 cut(s)	305, 395, 498
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	4 cut(s)	88, 456, 725, 776
HapII	CCGG	6 cut(s)	53, 85, 495, 546, 610, 726
HhaI	GCGC	2 cut(s)	84, 551
Hin1II	CATG	4 cut(s)	649, 791, 805, 940
Hin6I	GCGC	2 cut(s)	82, 549
HinP1I	GCGC	2 cut(s)	82, 549
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	650, 702
HpaII	CCGG	6 cut(s)	53, 85, 495, 546, 610, 726
HphI	GGTGA	3 cut(s)	344, 440, 484
Hpy166II	GTNNAC	3 cut(s)	213, 235, 540
Hpy188I	TCNGA	7 cut(s)	10, 126, 327, 339, 357, 394, 657
Hpy188III	TCNNGA	6 cut(s)	113, 284, 380, 515, 706, 894
Hpy8I	GTNNAC	3 cut(s)	213, 235, 540
Hpy99I	CGWCG	5 cut(s)	10, 242, 506, 565, 673
HpyAV	CCTTC	4 cut(s)	137, 268, 703, 762
HpyCH4III	ACNGT	5 cut(s)	208, 485, 866, 890, 945
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	5 cut(s)	469, 676, 749, 805, 918
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 406, 606
HpyF3I	CTNAG	1 cut(s)	654
HpySE526I	ACGT	1 cut(s)	668
Hsp92II	CATG	4 cut(s)	649, 791, 805, 940
HspAI	GCGC	2 cut(s)	82, 549
KflI	GGGWCCC	1 cut(s)	761
KroI	GCCGGC	2 cut(s)	84, 545
KroNI	GCCGGC	2 cut(s)	86, 547
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	5 cut(s)	157, 334, 424, 810, 909
LmnI	GCTCC	6 cut(s)	10, 55, 286, 414, 556, 718
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	3 cut(s)	135, 253, 939
MalI	GATC	5 cut(s)	159, 336, 426, 812, 911
MboI	GATC	5 cut(s)	157, 334, 424, 810, 909
MboII	GAAGA	4 cut(s)	67, 272, 614, 709
MfeI	CAATTG	1 cut(s)	806
MflI	RGATCY	2 cut(s)	157, 909
MhlI	GDGCHC	3 cut(s)	291, 448, 598
MluCI	AATT	4 cut(s)	120, 181, 247, 806
MmeI	TCCRAC	2 cut(s)	6, 927
MnlI	CCTC	5 cut(s)	288, 461, 522, 672, 766
MreI	CGCCGGCG	1 cut(s)	545
MroNI	GCCGGC	2 cut(s)	84, 545
MroXI	GAANNNNTTC	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	6 cut(s)	53, 85, 495, 546, 610, 726
MunI	CAATTG	1 cut(s)	806
MvnI	CGCG	2 cut(s)	82, 795
MwoI	GCNNNNNNNGC	3 cut(s)	56, 406, 606
NaeI	GCCGGC	2 cut(s)	86, 547
NcoI	CCATGG	1 cut(s)	645
NdeII	GATC	5 cut(s)	157, 334, 424, 810, 909
NgoMIV	GCCGGC	2 cut(s)	84, 545
NlaIII	CATG	4 cut(s)	649, 791, 805, 940
NlaIV	GGNNCC	3 cut(s)	499, 762, 763
NmeAIII	GCCGAG	1 cut(s)	432
NmuCI	GTSAC	2 cut(s)	253, 939
OliI	CACNNNNGTG	1 cut(s)	483
PdiI	GCCGGC	2 cut(s)	86, 547
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	650, 702
PinAI	ACCGGT	1 cut(s)	494
PkrI	GCNGC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	761
PspN4I	GGNNCC	3 cut(s)	499, 762, 763
PspPI	GGNCC	2 cut(s)	275, 761
PspPPI	RGGWCCY	1 cut(s)	761
PsuI	RGATCY	2 cut(s)	157, 909
RsaI	GTAC	2 cut(s)	65, 507
RsaNI	GTAC	2 cut(s)	64, 506
RseI	CAYNNNNRTG	1 cut(s)	483
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	5 cut(s)	157, 334, 424, 810, 909
Sau96I	GGNCC	2 cut(s)	275, 761
SduI	GDGCHC	3 cut(s)	291, 448, 598
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	2 cut(s)	204, 213
SgrAI	CRCCGGYG	1 cut(s)	545
SinI	GGWCC	2 cut(s)	275, 761
SmiMI	CAYNNNNRTG	1 cut(s)	483
Sse9I	AATT	4 cut(s)	120, 181, 247, 806
SsiI	CCGC	5 cut(s)	398, 526, 543, 793, 835
SspMI	CTAG	1 cut(s)	531
StyI	CCWWGG	3 cut(s)	575, 587, 645
TaaI	ACNGT	5 cut(s)	208, 485, 866, 890, 945
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	2 cut(s)	315, 893
TaqII	GACCGA	1 cut(s)	157
TasI	AATT	4 cut(s)	120, 181, 247, 806
TfiI	GAWTC	2 cut(s)	650, 702
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	2 cut(s)	253, 939
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	2 cut(s)	253, 939
TspDTI	ATGAA	5 cut(s)	341, 384, 790, 855, 971
TspGWI	ACGGA	1 cut(s)	490
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	2 cut(s)	275, 761
XapI	RAATTY	2 cut(s)	120, 247
XmiI	GTMKAC	2 cut(s)	212, 234
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.