Rh6CG093800

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003043
Physical Location & Seq
Forward (+)
10371877 .. 10389785
17909 bp
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UTR
Exon/CDS
Intron
Rh6CG093800.1

Sequence Viewer

Length: 336 bp
ATGTCGTCGGAGCTGTTTGGTAAGTTGGAGACTGAAGTTGAAATCAACGCTCCGGCTGCCAAGTACCACGAACTCTTCACGCGCCGGCCACACCATCTTTCCAATATCAGTCCCGATAAAATTCAGAGCTGTGAGTTACTTGAAGGTCAATGGGGAGATCTGGGTTCGGTCATCTACTGGAATTATTGCTATGTGAGGGAGATCATCGGAAGTCCATACCAGATGGCAGAGACTTTATCGGGGATTCAAGGAATAAGAAGAGGTATAAAAGAAGCTGATTTTCCTACCCAGTTGCTGGGTTTTGTTGTACCTTTGTTGTACTATGTATTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

111

Amino Acids

12.67

Weight (kDa)

5.27

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 7 - 63 2.9e-16 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 295
AccII CGCG 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 3 cut(s) 65, 309, 320
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 4 cut(s) 41, 143, 248, 331
AluBI AGCT 3 cut(s) 13, 129, 275
AluI AGCT 3 cut(s) 13, 129, 275
Alw26I GTCTC 2 cut(s) 23, 224
AlwNI CAGNNNCTG 1 cut(s) 295
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 102, 217
BcoDI GTCTC 2 cut(s) 23, 224
BglII AGATCT 1 cut(s) 157
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmrI ACTGGG 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 182, 289
BseLI CCNNNNNNNGG 1 cut(s) 295
BseNI ACTGG 2 cut(s) 182, 289
BseXI GCAGC 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 2 cut(s) 53, 85
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 2 cut(s) 23, 224
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 157, 201
BspANI GGCC 1 cut(s) 88
BspFNI CGCG 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 2 cut(s) 182, 289
BssAI RCCGGY 1 cut(s) 84
BssMI GATC 2 cut(s) 157, 201
Bst6I CTCTTC 2 cut(s) 80, 253
BstC8I GCNNGC 1 cut(s) 86
BstFNI CGCG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 2 cut(s) 160, 204
BstMAI GTCTC 2 cut(s) 23, 224
BstMBI GATC 2 cut(s) 157, 201
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 86
CaiI CAGNNNCTG 1 cut(s) 295
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 84
Csp6I GTAC 3 cut(s) 64, 308, 319
CviJI RGCY 5 cut(s) 13, 56, 88, 129, 275
CviKI_1 RGCY 5 cut(s) 13, 56, 88, 129, 275
CviQI GTAC 3 cut(s) 64, 308, 319
DpnI GATC 2 cut(s) 159, 203
DpnII GATC 2 cut(s) 157, 201
EaeI YGGCCR 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 80, 253
EarI CTCTTC 2 cut(s) 80, 253
Eco57I CTGAAG 1 cut(s) 54
FaiI YATR 4 cut(s) 192, 217, 266, 324
FaqI GGGAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 299
HaeIII GGCC 1 cut(s) 88
HapII CCGG 2 cut(s) 53, 85
HhaI GCGC 1 cut(s) 84
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 1 cut(s) 244
HpaII CCGG 2 cut(s) 53, 85
Hpy188I TCNGA 3 cut(s) 10, 126, 209
Hpy188III TCNNGA 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HspAI GCGC 1 cut(s) 82
KroI GCCGGC 1 cut(s) 84
KroNI GCCGGC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 157, 201
LmnI GCTCC 2 cut(s) 10, 55
LpnPI CCDG 7 cut(s) 66, 98, 146, 163, 233, 281, 302
Lsp1109I GCAGC 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 135
MalI GATC 2 cut(s) 159, 203
MboI GATC 2 cut(s) 157, 201
MboII GAAGA 2 cut(s) 67, 270
MflI RGATCY 1 cut(s) 157
MluCI AATT 3 cut(s) 120, 181, 331
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 2 cut(s) 189, 254
MroNI GCCGGC 1 cut(s) 84
MseI TTAA 1 cut(s) 334
MspI CCGG 2 cut(s) 53, 85
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 56
NaeI GCCGGC 1 cut(s) 86
NdeII GATC 2 cut(s) 157, 201
NgoMIV GCCGGC 1 cut(s) 84
PdiI GCCGGC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 244
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 3 cut(s) 65, 309, 320
RsaNI GTAC 3 cut(s) 64, 308, 319
SaqAI TTAA 1 cut(s) 334
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 157, 201
SetI ASST 6 cut(s) 15, 131, 148, 265, 277, 313
Sse9I AATT 3 cut(s) 120, 181, 331
TaqII GACCGA 1 cut(s) 157
TasI AATT 3 cut(s) 120, 181, 331
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TseI GCWGC 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 295
XapI RAATTY 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.