Rh6DG087700

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003043
Physical Location & Seq
Forward (+)
10291526 .. 10292384
859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG087700.1

Sequence Viewer

Length: 405 bp
ATGTCGTCGGAGCTGTTTGGTAAGTTGGAGACTGAAGTTGAAATCAACGCTCCGGCTGCCAAGTACCACGAACTCTTCACGCGCCGGCCACACCATCTTTCCAATATCAGTCCCGATAAAATTCAGAGCTGTGAGTTACTTGAAGGTCAATGGGGAGATCTGGGTTCGGTCATCTACTGGAATTATTGCTATGATGGGAAAACTACAGTGGCTACAGACTTGATTGAAGCCGTAGACGACGAAAAGAATTCTGTGACCTTCAAAGTCATTGATGGACCTCTTCTGGAGCACTACAAGAGCTTCAGGCTCATTGTCGAAGCTACTCCGAAAGGTGATCGGAACAGCTTGGTTCATCTGATTGTGGAATATGAAAAGCTTAACGACCAAGCACTACTACAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

134

Amino Acids

15.27

Weight (kDa)

4.92

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 7 - 130 1.9e-41 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AccII CGCG 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 2 cut(s) 120, 247
AcuI CTGAAG 2 cut(s) 54, 286
AfaI GTAC 1 cut(s) 65
AgsI TTSAA 4 cut(s) 41, 143, 227, 262
AluBI AGCT 6 cut(s) 13, 129, 300, 320, 345, 376
AluI AGCT 6 cut(s) 13, 129, 300, 320, 345, 376
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 23
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 2 cut(s) 120, 247
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 43
BccI CCATC 3 cut(s) 102, 188, 266
BceAI ACGGC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 23
BfmI CTRYAG 2 cut(s) 204, 213
BglII AGATCT 1 cut(s) 157
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 305
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 53, 85
BslFI GGGAC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 157, 334
BspANI GGCC 1 cut(s) 88
BspFNI CGCG 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 84
BssMI GATC 2 cut(s) 157, 334
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 2 cut(s) 80, 285
BstC8I GCNNGC 1 cut(s) 86
BstFNI CGCG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 2 cut(s) 160, 337
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 2 cut(s) 157, 334
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSFI CTRYAG 2 cut(s) 204, 213
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 64
CviQI GTAC 1 cut(s) 64
DpnI GATC 2 cut(s) 159, 336
DpnII GATC 2 cut(s) 157, 334
EaeI YGGCCR 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 80, 285
EarI CTCTTC 2 cut(s) 80, 285
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 2 cut(s) 54, 286
EcoRI GAATTC 1 cut(s) 247
FaiI YATR 2 cut(s) 192, 369
FaqI GGGAC 1 cut(s) 96
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 1 cut(s) 88
HapII CCGG 2 cut(s) 53, 85
HhaI GCGC 1 cut(s) 84
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 374
HpaII CCGG 2 cut(s) 53, 85
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 5 cut(s) 10, 126, 327, 339, 357
Hpy188III TCNNGA 2 cut(s) 113, 284
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 2 cut(s) 10, 242
HpyAV CCTTC 2 cut(s) 137, 268
HpyCH4III ACNGT 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HspAI GCGC 1 cut(s) 82
KroI GCCGGC 1 cut(s) 84
KroNI GCCGGC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 157, 334
LmnI GCTCC 3 cut(s) 10, 55, 286
LpnPI CCDG 6 cut(s) 66, 98, 146, 163, 269, 289
Lsp1109I GCAGC 1 cut(s) 43
MaeIII GTNAC 2 cut(s) 135, 253
MalI GATC 2 cut(s) 159, 336
MboI GATC 2 cut(s) 157, 334
MboII GAAGA 2 cut(s) 67, 272
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 3 cut(s) 120, 181, 247
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 1 cut(s) 288
MroNI GCCGGC 1 cut(s) 84
MseI TTAA 1 cut(s) 378
MspI CCGG 2 cut(s) 53, 85
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 56
NaeI GCCGGC 1 cut(s) 86
NdeII GATC 2 cut(s) 157, 334
NgoMIV GCCGGC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 253
PdiI GCCGGC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 157, 334
Sau96I GGNCC 1 cut(s) 275
SduI GDGCHC 1 cut(s) 291
SfcI CTRYAG 2 cut(s) 204, 213
SinI GGWCC 1 cut(s) 275
Sse9I AATT 3 cut(s) 120, 181, 247
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 315
TaqII GACCGA 1 cut(s) 157
TasI AATT 3 cut(s) 120, 181, 247
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 341, 384
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 120, 247
XmiI GTMKAC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.