RLG00000000624

mediator of RNA polymerase II transcription subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003043
Physical Location & Seq
Forward (+)
2717094 .. 2721173
4080 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000624

Sequence Viewer

Length: 567 bp
ATGGATTCGCAGACCCAGAACACGTCGTTGCAGAGGCTTCAGAATGTGGAGAAGAGAATCGTCAAGGTTTTGGAGCTGGCCGCAAGTGTGATGGACGAGCTTGCGAACCCTACTGGTCCCAGAAGGGAGTCCATCAACAACCATGTCCGCCAGTTCATGCAATTCATCAAGGATGTTCAAATGGCGTTGCGGGATGAAATCAAAAGTGCGTGTGATTACCGTCCATTTGAGAAGGTTTCCTCTCTCTATCTCTCTTTCTCCTCCTCCTTCGTCTCCAACACCATCAGGAAGTTGGCAGTTCATTCTGCTACATTGCATTTCGTCAAAGTGGAGTGTGTGAAGTTTGTACCCTATTTTATGTCTGAACGGGCCTCTCTCTATTGGTCGTCAATCGGATTGCTTGGTGAGTATTGTCCTACTAGAAAAAAGTACAGATTTACTGCTGGTGAAGTTGAATGCATCCATCTTGGATCACTAGAAGGCAATAACGCTCACTCTGTTGGTTGCCATTTTATGCAACCTGTTCCCTTTGCCGACTTATCTGATAAAGGAGCCCTTCTCCTATAA

Protein Analysis

189

Amino Acids

21.32

Weight (kDa)

8.59

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med11 PF10280 8 - 79 1.9e-14 Mediator complex protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 81, 148, 190
AclWI GGATC 1 cut(s) 478
AcoI YGGCCR 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 23
AfaI GTAC 2 cut(s) 348, 431
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 2 cut(s) 179, 455
AjiI CACGTC 1 cut(s) 24
AluBI AGCT 2 cut(s) 76, 100
AluI AGCT 2 cut(s) 76, 100
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 478
AoxI GGCC 2 cut(s) 78, 369
AspS9I GGNCC 2 cut(s) 116, 369
AsuHPI GGTGA 2 cut(s) 416, 458
AvaII GGWCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 556
BccI CCATC 4 cut(s) 85, 140, 290, 471
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 2 cut(s) 420, 476
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 116, 369
BmiI GGNNCC 2 cut(s) 118, 553
BmsI GCATC 1 cut(s) 468
BplI GAGNNNNNCTC 1 cut(s) 543
Bse1I ACTGG 2 cut(s) 118, 151
Bse3DI GCAATG 1 cut(s) 311
BseGI GGATG 3 cut(s) 178, 199, 459
BseMI GCAATG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 118, 151
BseRI GAGGAG 2 cut(s) 250, 253
BshFI GGCC 2 cut(s) 80, 371
BslFI GGGAC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 277
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 2 cut(s) 80, 371
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 1 cut(s) 470
BspACI CCGC 3 cut(s) 81, 148, 190
BspANI GGCC 2 cut(s) 80, 371
BspLI GGNNCC 2 cut(s) 118, 553
BspPI GGATC 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 311
BsrI ACTGG 2 cut(s) 118, 151
BssMI GATC 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 78, 102
BstF5I GGATG 3 cut(s) 178, 199, 459
BstKTI GATC 1 cut(s) 473
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 470
BsuRI GGCC 2 cut(s) 80, 371
BtrI CACGTC 1 cut(s) 24
BtsCI GGATG 3 cut(s) 178, 199, 459
Cac8I GCNNGC 2 cut(s) 78, 102
Cfr13I GGNCC 2 cut(s) 116, 369
Csp6I GTAC 2 cut(s) 347, 430
CviAII CATG 2 cut(s) 143, 157
CviJI RGCY 6 cut(s) 37, 76, 80, 100, 371, 554
CviKI_1 RGCY 6 cut(s) 37, 76, 80, 100, 371, 554
CviQI GTAC 2 cut(s) 347, 430
DpnI GATC 1 cut(s) 472
DpnII GATC 1 cut(s) 470
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 461
EcoT38I GRGCYC 1 cut(s) 556
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 2 cut(s) 146, 160
FaiI YATR 5 cut(s) 144, 158, 359, 515, 565
FalI AAGNNNNNCTT 1 cut(s) 540
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 142, 156
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 185, 206, 446
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 420, 476
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 2 cut(s) 80, 371
Hin1II CATG 2 cut(s) 146, 160
HinfI GANTC 3 cut(s) 5, 57, 128
HphI GGTGA 2 cut(s) 416, 458
Hpy188I TCNGA 4 cut(s) 42, 364, 395, 544
Hpy188III TCNNGA 1 cut(s) 286
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 5 cut(s) 117, 226, 277, 473, 566
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 5 cut(s) 31, 160, 316, 459, 517
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 2 cut(s) 146, 160
Kzo9I GATC 1 cut(s) 470
LmnI GCTCC 2 cut(s) 73, 551
LpnPI CCDG 8 cut(s) 29, 62, 99, 133, 164, 271, 429, 534
LweI GCATC 1 cut(s) 468
MaeI CTAG 2 cut(s) 420, 476
MaeII ACGT 1 cut(s) 23
MalI GATC 1 cut(s) 472
MboI GATC 1 cut(s) 470
MboII GAAGA 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 1 cut(s) 161
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 5 cut(s) 27, 250, 271, 274, 382
Mph1103I ATGCAT 1 cut(s) 461
Mva1269I GAATGC 1 cut(s) 461
NdeII GATC 1 cut(s) 470
NlaIII CATG 2 cut(s) 146, 160
NlaIV GGNNCC 2 cut(s) 118, 553
NsiI ATGCAT 1 cut(s) 461
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 5, 57
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 118, 553
PspPI GGNCC 2 cut(s) 116, 369
RsaI GTAC 2 cut(s) 348, 431
RsaNI GTAC 2 cut(s) 347, 430
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 470
Sau96I GGNCC 2 cut(s) 116, 369
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 1 cut(s) 556
SetI ASST 6 cut(s) 26, 69, 78, 102, 237, 523
SfaNI GCATC 1 cut(s) 468
SinI GGWCC 1 cut(s) 116
Sse9I AATT 1 cut(s) 161
SsiI CCGC 3 cut(s) 81, 148, 190
SspMI CTAG 2 cut(s) 420, 476
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 26
TasI AATT 1 cut(s) 161
TatI WGTACW 1 cut(s) 429
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 5, 57
TspDTI ATGAA 4 cut(s) 145, 154, 210, 290
VpaK11BI GGWCC 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 2 cut(s) 420, 476
Zsp2I ATGCAT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.