Rroxscaffold_7G00206730

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003043
Physical Location & Seq
Forward (+)
56492415 .. 56493454
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206730.1

Sequence Viewer

Length: 468 bp
ATGTCGTCGGAGCTGTTTGGTAAGTTGGAGACTGAAGTTGAAATCAACGCTCCGGCTGCCAAGTACCAAGAACTCTTCACGCACCGGCCACACCATCTTTCCAATATCAGTCCCGATAAAATTCAGAGCTGTGAGTTACTTGAAGGTCAATGGGGAGATCTGGGTTCGGTCATCTACTGGAATTATTGCTATGATGGGAAAAACACGGTGGCTACAGACTTGATTGAAGCCCTAGACGACGAAAAGAATTCTGTGACCTTCAAAGTCATTGACGGACCTCTTCTGGAGCACTACAAGAGCTTCAGGCTCATTGTCGAAGCTACTCCGAAAGGTGATCGGAACAGCTTGGTTCATCTGATTGTGGAATATGAAAAGCTACACGACCAAGTTTCAGATCCACATAGCTTGCTCCAGTTTGTAGCTGATCTCTCCAAAGATATGGGTGCTCACCTCAGTACTCAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

155

Amino Acids

17.53

Weight (kDa)

4.93

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 7 - 152 2.5e-46 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 389
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 2 cut(s) 120, 247
AcuI CTGAAG 2 cut(s) 54, 286
AfaI GTAC 2 cut(s) 65, 457
AgsI TTSAA 4 cut(s) 41, 143, 227, 262
AluBI AGCT 8 cut(s) 13, 129, 300, 320, 345, 376, 405, 422
AluI AGCT 8 cut(s) 13, 129, 300, 320, 345, 376, 405, 422
Alw21I GWGCWC 2 cut(s) 291, 448
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 1 cut(s) 389
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 2 cut(s) 120, 247
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 344, 440
AvaII GGWCC 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 291, 448
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 102, 188
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 213
BglII AGATCT 1 cut(s) 157
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmcAI AGTACT 1 cut(s) 457
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BpmI CTGGAG 2 cut(s) 305, 395
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 2 cut(s) 182, 412
BseMII CTCAG 1 cut(s) 466
BseNI ACTGG 2 cut(s) 182, 412
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 291, 448
BsiSI CCGG 2 cut(s) 53, 85
BslFI GGGAC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 291, 448
Bsp143I GATC 4 cut(s) 157, 334, 394, 424
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 465
BspPI GGATC 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 2 cut(s) 182, 412
BssAI RCCGGY 1 cut(s) 84
BssMI GATC 4 cut(s) 157, 334, 394, 424
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 2 cut(s) 80, 285
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 452
BstKTI GATC 4 cut(s) 160, 337, 397, 427
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 4 cut(s) 157, 334, 394, 424
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 2 cut(s) 157, 394
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 2 cut(s) 157, 394
BsuRI GGCC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 407
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 64, 456
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviQI GTAC 2 cut(s) 64, 456
DdeI CTNAG 1 cut(s) 452
DpnI GATC 4 cut(s) 159, 336, 396, 426
DpnII GATC 4 cut(s) 157, 334, 394, 424
EaeI YGGCCR 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 80, 285
EarI CTCTTC 2 cut(s) 80, 285
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 2 cut(s) 54, 286
EcoRI GAATTC 1 cut(s) 247
FaiI YATR 5 cut(s) 192, 369, 402, 440, 466
FaqI GGGAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 233
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 2 cut(s) 305, 395
HaeIII GGCC 1 cut(s) 88
HapII CCGG 2 cut(s) 53, 85
HpaII CCGG 2 cut(s) 53, 85
HphI GGTGA 2 cut(s) 344, 440
Hpy188I TCNGA 6 cut(s) 10, 126, 327, 339, 357, 394
Hpy188III TCNNGA 2 cut(s) 113, 284
Hpy99I CGWCG 2 cut(s) 10, 242
HpyAV CCTTC 2 cut(s) 137, 268
HpyCH4III ACNGT 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 452
Kzo9I GATC 4 cut(s) 157, 334, 394, 424
LmnI GCTCC 4 cut(s) 10, 55, 286, 414
LpnPI CCDG 7 cut(s) 66, 98, 146, 163, 269, 289, 425
Lsp1109I GCAGC 1 cut(s) 43
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 2 cut(s) 135, 253
MalI GATC 4 cut(s) 159, 336, 396, 426
MboI GATC 4 cut(s) 157, 334, 394, 424
MboII GAAGA 2 cut(s) 67, 272
MflI RGATCY 2 cut(s) 157, 394
MhlI GDGCHC 2 cut(s) 291, 448
MluCI AATT 3 cut(s) 120, 181, 247
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 2 cut(s) 288, 461
MspI CCGG 2 cut(s) 53, 85
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 4 cut(s) 157, 334, 394, 424
NmuCI GTSAC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 2 cut(s) 157, 394
RsaI GTAC 2 cut(s) 65, 457
RsaNI GTAC 2 cut(s) 64, 456
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 4 cut(s) 157, 334, 394, 424
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 1 cut(s) 457
SduI GDGCHC 2 cut(s) 291, 448
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 275
Sse9I AATT 3 cut(s) 120, 181, 247
SspMI CTAG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 315
TaqII GACCGA 1 cut(s) 157
TasI AATT 3 cut(s) 120, 181, 247
TatI WGTACW 1 cut(s) 455
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 341, 384
TspGWI ACGGA 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 120, 247
XspI CTAG 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.