Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003043

Physical Location & Seq

Genomic Coordinates Reverse (-)

54385361 .. 54385994

Gene Structure 634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014531

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGATTCGCAGACCCAGAACACGTCGTTGCAGAGGCTTCAAAATGTGGAGAAGAGAATCGTGAAGGTTTTGGAGCTGGCGGGAAGTGTGATGGACGAGCTTGCAAACCCTACTGGTCCCAGAAGGGAGGCCATCAACAACCATGTTCGCGAGTTCATGCAATTGATCAAGGATATTCAAGTGGCATTGCGGGATGAAATCAAAAGTGCGTGTGATTACCGTCCATTTGAGAAGTGTGATTACAGTTCGAGAATAGCTAACGAGATCTGTTGCAAGAAACTGGAATATGTCATGTCACAGTTAGATGGAATGAAAGAAACAATAGATGATTATCATACTGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med11

Protein Analysis

116

Amino Acids

13.28

Weight (kDa)

5.39

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med11	PF10280	8 - 109	6.1e-21	Mediator complex protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01435 AT3G01435 AT3G01435 AT3G01435
fragaria_vesca	FvH4_2g07050 FvH4_2g07070
malus_domestica	MD10G1088300.v1.1
prunus_persica	Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G115200_v2.0.a1
pyrus_communis	pycom10g07060
rosa_chinensis	RchiOBHm_Chr6g0259451 RchiOBHm_Chr6g0259461 RchiOBHm_Chr7g0240711
rosa_laevigata	RLG00000000624 RLG00000014531 RLG00000014532 RLG00000014533
rosa_multiflora	Rmu_sc0006836.1_g000001 Rmu_sc0006836.1_g000005 Rmu_ssc0000050.1_g000040
rosa_roxburghii	Rroxscaffold_3G00219640 Rroxscaffold_7G00206730 Rroxscaffold_7G00206740
rosa_rugosa	Rorug05G0588800 Rorug05G0588900 Rorug07G0338400
rosa_samantha	Rh6AG104700 Rh6BG097800 Rh6CG093800 Rh6DG087700 Rh7AG493100 Rh7BG465100
rosa_wichuraiana	Rw6G009040 Rw6G009060 Rw6G009070 Rw7G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	150
AciI	CCGC	2 cut(s)	80, 190
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	41, 179
AjiI	CACGTC	1 cut(s)	24
AluBI	AGCT	3 cut(s)	76, 100, 257
AluI	AGCT	3 cut(s)	76, 100, 257
AoxI	GGCC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BccI	CCATC	3 cut(s)	85, 140, 299
BclI	TGATCA	1 cut(s)	165
BglII	AGATCT	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	330
Bse1I	ACTGG	2 cut(s)	118, 285
Bse3DI	GCAATG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	330
BseGI	GGATG	1 cut(s)	199
BseJI	GATNNNNATC	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	118, 285
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	165, 264
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	2 cut(s)	80, 190
BspANI	GGCC	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	118, 285
BssMI	GATC	2 cut(s)	165, 264
Bst4CI	ACNGT	3 cut(s)	221, 245, 300
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	78, 102
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	2 cut(s)	168, 267
BstMBI	GATC	2 cut(s)	165, 264
BstUI	CGCG	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	131
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	199
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	78, 102
Cfr13I	GGNCC	1 cut(s)	116
CviAII	CATG	3 cut(s)	143, 157, 292
CviJI	RGCY	5 cut(s)	37, 76, 100, 131, 257
CviKI_1	RGCY	5 cut(s)	37, 76, 100, 131, 257
DpnI	GATC	2 cut(s)	167, 266
DpnII	GATC	2 cut(s)	165, 264
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	116
FaeI	CATG	3 cut(s)	146, 160, 295
FaiI	YATR	5 cut(s)	144, 158, 288, 293, 336
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	3 cut(s)	142, 156, 291
FauI	CCCGC	2 cut(s)	73, 183
FbaI	TGATCA	1 cut(s)	165
FokI	GGATG	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	146, 160, 295
HinfI	GANTC	2 cut(s)	5, 57
Hpy188III	TCNNGA	3 cut(s)	61, 149, 249
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	58, 117
HpyCH4III	ACNGT	3 cut(s)	221, 245, 300
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	31, 104, 160, 273
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	146, 160, 295
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	165, 264
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	5 cut(s)	29, 62, 99, 133, 266
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	2 cut(s)	167, 266
MboI	GATC	2 cut(s)	165, 264
MboII	GAAGA	1 cut(s)	64
MfeI	CAATTG	1 cut(s)	161
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	1 cut(s)	161
MnlI	CCTC	2 cut(s)	27, 121
MunI	CAATTG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	150
NdeII	GATC	2 cut(s)	165, 264
NlaIII	CATG	3 cut(s)	146, 160, 295
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	294
NruI	TCGCGA	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	5, 57
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	264
RruI	TCGCGA	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	165, 264
Sau96I	GGNCC	1 cut(s)	116
SetI	ASST	5 cut(s)	26, 69, 78, 102, 259
SinI	GGWCC	1 cut(s)	116
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	2 cut(s)	80, 190
TaaI	ACNGT	3 cut(s)	221, 245, 300
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	248
TasI	AATT	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	5, 57
TseFI	GTSAC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	3 cut(s)	145, 210, 326
VpaK11BI	GGWCC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.