Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0003043

Physical Location & Seq

Genomic Coordinates Reverse (-)

155210 .. 161009

Gene Structure 5800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgtcgtcggagctgtttggtaagttggacactgaagttgaaatcaacgctccggctgccaagtaccacgaactcttcacgcgccggccacaccatctttccaatatcagtcccgataaaattcagagttgtgagttacttgaaggtcaatggggagatctgggttcggtcatctactggaattattgctatgatgggaaaactacgttggctacagacttgattgaagccgtagacgacgaaaagaattctgtgaccttcaaagtcattgatggacctcttctggagcactacaagagcttcaggctcattgtcgaagctactccgaaaggtgatcggaacagcttggttcatctgattgtggaatatgaaaagcttcacgaccaagtttcagacccgcatagcttgctccagtttgtagctgatctctccaaagatatggttcttctggtttctcaatcaaacgccatggattctcagacccagaacacgtcgttgcagaggcttcaaaatgtggagaagagaatcgtgaaggttttggagctggccggaagtgtgatggacgagcttgcaaaccctacgggtcccagaagggaggccatcaacaaccatgtccgcgagttcatgcaattgatcaaggatattcaagtggcattgcgggatgaaatcaaaagtgcgtgtgattaccgtccatttgagaagtgtgattacagttcgagaatagctaacgagatctgttgcaagaaactggaatatgtcatgtcacagttggatggaatgaaagaaacaatagatgattatcatactgctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

271

Amino Acids

30.91

Weight (kDa)

5.08

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01435 AT3G01435 AT3G01435 AT3G01435
fragaria_vesca	FvH4_2g07050 FvH4_2g07070
malus_domestica	MD10G1088300.v1.1
prunus_persica	Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G115200_v2.0.a1
pyrus_communis	pycom10g07060
rosa_chinensis	RchiOBHm_Chr6g0259451 RchiOBHm_Chr6g0259461 RchiOBHm_Chr7g0240711
rosa_laevigata	RLG00000000624 RLG00000014531 RLG00000014532 RLG00000014533
rosa_multiflora	Rmu_sc0006836.1_g000001 Rmu_sc0006836.1_g000005 Rmu_ssc0000050.1_g000040
rosa_roxburghii	Rroxscaffold_3G00219640 Rroxscaffold_7G00206730 Rroxscaffold_7G00206740
rosa_rugosa	Rorug05G0588800 Rorug05G0588900 Rorug07G0338400
rosa_samantha	Rh6AG104700 Rh6BG097800 Rh6CG093800 Rh6DG087700 Rh7AG493100 Rh7BG465100
rosa_wichuraiana	Rw6G009040 Rw6G009060 Rw6G009070 Rw7G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	2 cut(s)	82, 618
AciI	CCGC	3 cut(s)	398, 616, 658
AcoI	YGGCCR	2 cut(s)	86, 546
AcsI	RAATTY	2 cut(s)	120, 247
AcuI	CTGAAG	2 cut(s)	54, 286
AfaI	GTAC	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	6 cut(s)	41, 143, 227, 262, 509, 647
AjiI	CACGTC	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
Alw21I	GWGCWC	1 cut(s)	291
AoxI	GGCC	3 cut(s)	86, 546, 597
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	120, 247
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	275, 584
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	275, 584
BarI	GAAGNNNNNNTAC	2 cut(s)	692, 724
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	6 cut(s)	102, 188, 266, 553, 608, 767
BceAI	ACGGC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	213
BglII	AGATCT	2 cut(s)	157, 732
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	275, 584
BmgBI	CACGTC	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	275, 584
BmiI	GGNNCC	2 cut(s)	585, 586
BpmI	CTGGAG	2 cut(s)	305, 395
BsaBI	GATNNNNATC	1 cut(s)	798
BsaJI	CCNNGG	1 cut(s)	468
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	3 cut(s)	182, 412, 753
Bse3DI	GCAATG	1 cut(s)	653
Bse8I	GATNNNNATC	1 cut(s)	798
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	2 cut(s)	667, 778
BseJI	GATNNNNATC	1 cut(s)	798
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	3 cut(s)	182, 412, 753
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	2 cut(s)	82, 618
BshFI	GGCC	3 cut(s)	88, 548, 599
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	53, 85, 549
BslFI	GGGAC	2 cut(s)	96, 570
BsmFI	GGGAC	2 cut(s)	96, 570
BsnI	GGCC	3 cut(s)	88, 548, 599
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	5 cut(s)	157, 334, 424, 633, 732
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	3 cut(s)	398, 616, 658
BspANI	GGCC	3 cut(s)	88, 548, 599
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	2 cut(s)	82, 618
BspLI	GGNNCC	2 cut(s)	585, 586
BsrDI	GCAATG	1 cut(s)	653
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	3 cut(s)	182, 412, 753
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	5 cut(s)	157, 334, 424, 633, 732
BssT1I	CCWWGG	1 cut(s)	468
Bst4CI	ACNGT	3 cut(s)	689, 713, 768
Bst6I	CTCTTC	3 cut(s)	80, 285, 515
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstC8I	GCNNGC	4 cut(s)	86, 407, 546, 570
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	667, 778
BstFNI	CGCG	2 cut(s)	82, 618
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	5 cut(s)	160, 337, 427, 636, 735
BstMBI	GATC	5 cut(s)	157, 334, 424, 633, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 406
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	2 cut(s)	82, 618
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	157, 732
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	2 cut(s)	157, 732
BsuRI	GGCC	3 cut(s)	88, 548, 599
BtgI	CCRYGG	1 cut(s)	468
BtrI	CACGTC	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	667, 778
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	4 cut(s)	86, 407, 546, 570
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	275, 584
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	4 cut(s)	469, 611, 625, 760
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	5 cut(s)	159, 336, 426, 635, 734
DpnII	GATC	5 cut(s)	157, 334, 424, 633, 732
EaeI	YGGCCR	2 cut(s)	86, 546
Eam1104I	CTCTTC	3 cut(s)	80, 285, 515
EarI	CTCTTC	3 cut(s)	80, 285, 515
Eco130I	CCWWGG	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	275, 584
Eco57I	CTGAAG	2 cut(s)	54, 286
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	4 cut(s)	472, 614, 628, 763
FaqI	GGGAC	2 cut(s)	96, 570
FatI	CATG	4 cut(s)	468, 610, 624, 759
FauI	CCCGC	2 cut(s)	405, 651
FbaI	TGATCA	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	674, 785
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	2 cut(s)	305, 395
HaeIII	GGCC	3 cut(s)	88, 548, 599
HapII	CCGG	3 cut(s)	53, 85, 549
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	472, 614, 628, 763
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	473, 525
HpaII	CCGG	3 cut(s)	53, 85, 549
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	7 cut(s)	10, 126, 327, 339, 357, 394, 480
Hpy188III	TCNNGA	5 cut(s)	113, 284, 380, 529, 717
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	3 cut(s)	10, 242, 496
HpyAV	CCTTC	4 cut(s)	137, 268, 526, 585
HpyCH4III	ACNGT	3 cut(s)	689, 713, 768
HpyCH4IV	ACGT	2 cut(s)	206, 491
HpyCH4V	TGCA	4 cut(s)	499, 572, 628, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 406
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	2 cut(s)	206, 491
Hsp92II	CATG	4 cut(s)	472, 614, 628, 763
HspAI	GCGC	1 cut(s)	82
KflI	GGGWCCC	1 cut(s)	584
KroI	GCCGGC	1 cut(s)	84
KroNI	GCCGGC	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	5 cut(s)	157, 334, 424, 633, 732
LmnI	GCTCC	5 cut(s)	10, 55, 286, 414, 541
Lsp1109I	GCAGC	1 cut(s)	43
MaeII	ACGT	2 cut(s)	206, 491
MaeIII	GTNAC	3 cut(s)	135, 253, 762
MalI	GATC	5 cut(s)	159, 336, 426, 635, 734
MboI	GATC	5 cut(s)	157, 334, 424, 633, 732
MboII	GAAGA	4 cut(s)	67, 272, 437, 532
MfeI	CAATTG	1 cut(s)	629
MflI	RGATCY	2 cut(s)	157, 732
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	4 cut(s)	120, 181, 247, 629
MmeI	TCCRAC	2 cut(s)	6, 750
MnlI	CCTC	3 cut(s)	288, 495, 589
MroNI	GCCGGC	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	375
MspI	CCGG	3 cut(s)	53, 85, 549
MunI	CAATTG	1 cut(s)	629
MvnI	CGCG	2 cut(s)	82, 618
MwoI	GCNNNNNNNGC	2 cut(s)	56, 406
NaeI	GCCGGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	5 cut(s)	157, 334, 424, 633, 732
NgoMIV	GCCGGC	1 cut(s)	84
NlaIII	CATG	4 cut(s)	472, 614, 628, 763
NlaIV	GGNNCC	2 cut(s)	585, 586
NmuCI	GTSAC	2 cut(s)	253, 762
PdiI	GCCGGC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	473, 525
PkrI	GCNGC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	584
PspN4I	GGNNCC	2 cut(s)	585, 586
PspPI	GGNCC	2 cut(s)	275, 584
PspPPI	RGGWCCY	1 cut(s)	584
PsuI	RGATCY	2 cut(s)	157, 732
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	5 cut(s)	157, 334, 424, 633, 732
Sau96I	GGNCC	2 cut(s)	275, 584
SduI	GDGCHC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	2 cut(s)	275, 584
Sse9I	AATT	4 cut(s)	120, 181, 247, 629
SsiI	CCGC	3 cut(s)	398, 616, 658
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	3 cut(s)	689, 713, 768
TaiI	ACGT	2 cut(s)	209, 494
TaqI	TCGA	2 cut(s)	315, 716
TaqII	GACCGA	1 cut(s)	157
TasI	AATT	4 cut(s)	120, 181, 247, 629
TfiI	GAWTC	2 cut(s)	473, 525
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	253, 762
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	2 cut(s)	253, 762
TspDTI	ATGAA	5 cut(s)	341, 384, 613, 678, 794
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	275, 584
XapI	RAATTY	2 cut(s)	120, 247
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.