Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003043

Physical Location & Seq

Genomic Coordinates Reverse (-)

13059405 .. 13064830

Gene Structure 5426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1088300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGATTCGCAGACCCAGAACACCTCGTTGCAGAGACTCCAAAACGTGGAGAATAGAATCGTTAAGGTTTTGGAGCTAGCAGGAGGCGTCATGGATGAGCTTGCAAACCCTAGCGGTCCCAGAAAGGAGTACATCAACAACCATTGCCGCGAGTTCATGCAATTGATCAAGGATATTCAAGTGGCACTACGGGATGAAATTAAAAGTGCATGCGATTACCGTCCATTTGAGAAGTGTGATTACAGTTCAAGAATAGCTAATGAGATCTGTTGCAAGAAGCTCGAGTATGTCATGTCACAATTGGATCGAATGAAAGAAACAATTGATGAGTATCATAATGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med11

Protein Analysis

116

Amino Acids

13.42

Weight (kDa)

5.41

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med11	PF10280	8 - 109	5.5e-21	Mediator complex protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01435 AT3G01435 AT3G01435 AT3G01435
fragaria_vesca	FvH4_2g07050 FvH4_2g07070
malus_domestica	MD10G1088300.v1.1
prunus_persica	Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G115200_v2.0.a1
pyrus_communis	pycom10g07060
rosa_chinensis	RchiOBHm_Chr6g0259451 RchiOBHm_Chr6g0259461 RchiOBHm_Chr7g0240711
rosa_laevigata	RLG00000000624 RLG00000014531 RLG00000014532 RLG00000014533
rosa_multiflora	Rmu_sc0006836.1_g000001 Rmu_sc0006836.1_g000005 Rmu_ssc0000050.1_g000040
rosa_roxburghii	Rroxscaffold_3G00219640 Rroxscaffold_7G00206730 Rroxscaffold_7G00206740
rosa_rugosa	Rorug05G0588800 Rorug05G0588900 Rorug07G0338400
rosa_samantha	Rh6AG104700 Rh6BG097800 Rh6CG093800 Rh6DG087700 Rh7AG493100 Rh7BG465100
rosa_wichuraiana	Rw6G009040 Rw6G009060 Rw6G009070 Rw7G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccII	CGCG	1 cut(s)	150
AciI	CCGC	2 cut(s)	114, 148
AclWI	GGATC	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	179, 249
AluBI	AGCT	4 cut(s)	76, 100, 257, 280
AluI	AGCT	4 cut(s)	76, 100, 257, 280
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	116
AsuNHI	GCTAGC	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	77, 111
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	118
BmtI	GCTAGC	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	330
BseGI	GGATG	2 cut(s)	100, 199
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	165, 264, 304
BspACI	CCGC	2 cut(s)	114, 148
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	118
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	142
BssMI	GATC	3 cut(s)	165, 264, 304
BssNI	GRCGYC	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	221, 245
BstACI	GRCGYC	1 cut(s)	87
BstC8I	GCNNGC	3 cut(s)	78, 102, 211
BstF5I	GGATG	2 cut(s)	100, 199
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	3 cut(s)	168, 267, 307
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	3 cut(s)	165, 264, 304
BstNSI	RCATGY	1 cut(s)	213
BstUI	CGCG	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	100, 199
Cac8I	GCNNGC	3 cut(s)	78, 102, 211
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	4 cut(s)	91, 157, 210, 292
CviJI	RGCY	4 cut(s)	76, 100, 257, 280
CviKI_1	RGCY	4 cut(s)	76, 100, 257, 280
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	3 cut(s)	167, 266, 306
DpnII	GATC	3 cut(s)	165, 264, 304
Eco47I	GGWCC	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	281
FaeI	CATG	4 cut(s)	94, 160, 213, 295
FaiI	YATR	6 cut(s)	92, 158, 211, 288, 293, 336
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	4 cut(s)	90, 156, 209, 291
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	2 cut(s)	107, 206
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	2 cut(s)	77, 111
GluI	GCNGC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	94, 160, 213, 295
HinfI	GANTC	3 cut(s)	5, 36, 57
Hpy188III	TCNNGA	1 cut(s)	249
HpyCH4III	ACNGT	2 cut(s)	221, 245
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	6 cut(s)	31, 104, 160, 209, 273, 341
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	94, 160, 213, 295
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	165, 264, 304
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	3 cut(s)	29, 66, 133
MaeI	CTAG	2 cut(s)	77, 111
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	3 cut(s)	167, 266, 306
MboI	GATC	3 cut(s)	165, 264, 304
MfeI	CAATTG	3 cut(s)	161, 299, 321
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	4 cut(s)	161, 198, 299, 321
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	2 cut(s)	34, 77
MseI	TTAA	2 cut(s)	63, 201
MunI	CAATTG	3 cut(s)	161, 299, 321
MvnI	CGCG	1 cut(s)	150
NdeII	GATC	3 cut(s)	165, 264, 304
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	4 cut(s)	94, 160, 213, 295
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	294
NspI	RCATGY	1 cut(s)	213
PaeI	GCATGC	1 cut(s)	213
PaeR7I	CTCGAG	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	5, 57
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	116
PspXI	VCTCGAGB	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	63, 201
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	3 cut(s)	165, 264, 304
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	30
SetI	ASST	7 cut(s)	26, 48, 69, 78, 102, 259, 282
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	213
Sse9I	AATT	4 cut(s)	161, 198, 299, 321
SsiI	CCGC	2 cut(s)	114, 148
SspMI	CTAG	2 cut(s)	77, 111
TaaI	ACNGT	2 cut(s)	221, 245
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	282, 307
TasI	AATT	4 cut(s)	161, 198, 299, 321
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	5, 57
Tru1I	TTAA	2 cut(s)	63, 201
Tru9I	TTAA	2 cut(s)	63, 201
TseFI	GTSAC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	3 cut(s)	145, 210, 326
Van91I	CCANNNNNTGG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	116
XceI	RCATGY	1 cut(s)	213
XhoI	CTCGAG	1 cut(s)	281
XspI	CTAG	2 cut(s)	77, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.