Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006836.1

Orthogroup ID

OG0003043

Physical Location & Seq

Genomic Coordinates Reverse (-)

10740 .. 13222

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006836.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgtcgtcggagctgtttggtaaattggagactgaagttgaaatcaacgctccggctgccaagtaccacgaactcttcacgcgccggccacaccatctttccaatatcagtcccgataaaattcagagctgtgagttacttgaaggtcaatggggagatctgggttcggtcatctactggaattattgctatgatgggaaaactacagtggctacagacttgattgaagccgtagacgacgaaaagaattctgtgaccttcaaagtcattgatggacctcttctggagcactacaagagcttcaggctcattgtcgaagctactccgaaaggtgatcggaacagcttggttcatctgattgtggaatatgaaaagcttcacgaccaagtttcagacccgcatagcttgctccagtttgtagctgatctccctaaagatatggcgactctctgtgctcacttattcttcaatcccagttcttctctggtttctcaatcaaacgccatggattctcagacccagaacacgtcgttgcagaggcttcaaaatgtggagaagagaatcgtgaaggttttggagctggccggaagtgtgatggacgagcttgcaaaccctactggtcccagaagggaggccatcaacaaccatgtccgtgagttcatgcaattgatcaaggtacctcttccttacactacccaagaattgaattgtgagaaagttgcaaacttgggttttgtaatggaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

249

Amino Acids

28.14

Weight (kDa)

5.18

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01435 AT3G01435 AT3G01435 AT3G01435
fragaria_vesca	FvH4_2g07050 FvH4_2g07070
malus_domestica	MD10G1088300.v1.1
prunus_persica	Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G115200_v2.0.a1
pyrus_communis	pycom10g07060
rosa_chinensis	RchiOBHm_Chr6g0259451 RchiOBHm_Chr6g0259461 RchiOBHm_Chr7g0240711
rosa_laevigata	RLG00000000624 RLG00000014531 RLG00000014532 RLG00000014533
rosa_multiflora	Rmu_sc0006836.1_g000001 Rmu_sc0006836.1_g000005 Rmu_ssc0000050.1_g000040
rosa_roxburghii	Rroxscaffold_3G00219640 Rroxscaffold_7G00206730 Rroxscaffold_7G00206740
rosa_rugosa	Rorug05G0588800 Rorug05G0588900 Rorug07G0338400
rosa_samantha	Rh6AG104700 Rh6BG097800 Rh6CG093800 Rh6DG087700 Rh7AG493100 Rh7BG465100
rosa_wichuraiana	Rw6G009040 Rw6G009060 Rw6G009070 Rw7G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	398
AcoI	YGGCCR	2 cut(s)	86, 582
AcsI	RAATTY	2 cut(s)	120, 247
AcuI	CTGAAG	2 cut(s)	54, 286
AfaI	GTAC	2 cut(s)	65, 678
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	7 cut(s)	41, 143, 227, 262, 469, 545, 706
AjiI	CACGTC	1 cut(s)	528
Alw21I	GWGCWC	2 cut(s)	291, 457
Alw26I	GTCTC	1 cut(s)	23
AoxI	GGCC	3 cut(s)	86, 582, 633
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	120, 247
Asp700I	GAANNNNTTC	1 cut(s)	375
Asp718I	GGTACC	1 cut(s)	676
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	275, 620
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	275, 620
BanI	GGYRCC	1 cut(s)	676
Bbv12I	GWGCWC	2 cut(s)	291, 457
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	5 cut(s)	102, 188, 266, 589, 644
BceAI	ACGGC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	669
BcoDI	GTCTC	1 cut(s)	23
BfmI	CTRYAG	2 cut(s)	204, 213
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	275, 620
BmgBI	CACGTC	1 cut(s)	528
BmgT120I	GGNCC	2 cut(s)	275, 620
BmiI	GGNNCC	2 cut(s)	622, 678
BmrI	ACTGGG	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	468
BpmI	CTGGAG	2 cut(s)	305, 395
BsaJI	CCNNGG	1 cut(s)	504
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	4 cut(s)	182, 412, 474, 622
BseDI	CCNNGG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	4 cut(s)	182, 412, 474, 622
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	88, 584, 635
BshNI	GGYRCC	1 cut(s)	676
BsiHKAI	GWGCWC	2 cut(s)	291, 457
BsiSI	CCGG	3 cut(s)	53, 85, 585
BslFI	GGGAC	2 cut(s)	96, 606
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	2 cut(s)	96, 606
BsnI	GGCC	3 cut(s)	88, 584, 635
Bsp1286I	GDGCHC	2 cut(s)	291, 457
Bsp143I	GATC	4 cut(s)	157, 334, 424, 669
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	3 cut(s)	88, 584, 635
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	622, 678
BspT107I	GGYRCC	1 cut(s)	676
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	4 cut(s)	182, 412, 474, 622
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	4 cut(s)	157, 334, 424, 669
BssT1I	CCWWGG	1 cut(s)	504
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	4 cut(s)	80, 285, 551, 687
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstC8I	GCNNGC	4 cut(s)	86, 407, 582, 606
BstDEI	CTNAG	1 cut(s)	513
BstDSI	CCRYGG	1 cut(s)	504
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	4 cut(s)	160, 337, 427, 672
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	4 cut(s)	157, 334, 424, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 406
BstSFI	CTRYAG	2 cut(s)	204, 213
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	88, 584, 635
BtgI	CCRYGG	1 cut(s)	504
BtrI	CACGTC	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	4 cut(s)	86, 407, 582, 606
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	275, 620
Csp6I	GTAC	2 cut(s)	64, 677
CviAII	CATG	3 cut(s)	505, 647, 661
CviQI	GTAC	2 cut(s)	64, 677
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	4 cut(s)	159, 336, 426, 671
DpnII	GATC	4 cut(s)	157, 334, 424, 669
EaeI	YGGCCR	2 cut(s)	86, 582
Eam1104I	CTCTTC	4 cut(s)	80, 285, 551, 687
EarI	CTCTTC	4 cut(s)	80, 285, 551, 687
Eco130I	CCWWGG	1 cut(s)	504
Eco47I	GGWCC	2 cut(s)	275, 620
Eco57I	CTGAAG	2 cut(s)	54, 286
EcoRI	GAATTC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	3 cut(s)	508, 650, 664
FaiI	YATR	7 cut(s)	192, 369, 402, 440, 506, 648, 662
FaqI	GGGAC	2 cut(s)	96, 606
FatI	CATG	3 cut(s)	504, 646, 660
FauI	CCCGC	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	669
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	2 cut(s)	305, 395
HaeIII	GGCC	3 cut(s)	88, 584, 635
HapII	CCGG	3 cut(s)	53, 85, 585
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	508, 650, 664
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	3 cut(s)	445, 509, 561
HpaII	CCGG	3 cut(s)	53, 85, 585
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	7 cut(s)	10, 126, 327, 339, 357, 394, 516
Hpy188III	TCNNGA	4 cut(s)	113, 284, 380, 565
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	3 cut(s)	10, 242, 532
HpyAV	CCTTC	4 cut(s)	137, 268, 562, 621
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	4 cut(s)	535, 608, 664, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 406
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	508, 650, 664
HspAI	GCGC	1 cut(s)	82
KpnI	GGTACC	1 cut(s)	680
KroI	GCCGGC	1 cut(s)	84
KroNI	GCCGGC	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	4 cut(s)	157, 334, 424, 669
LmnI	GCTCC	5 cut(s)	10, 55, 286, 414, 577
Lsp1109I	GCAGC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	2 cut(s)	135, 253
MalI	GATC	4 cut(s)	159, 336, 426, 671
MboI	GATC	4 cut(s)	157, 334, 424, 669
MboII	GAAGA	6 cut(s)	67, 272, 457, 471, 568, 674
MfeI	CAATTG	1 cut(s)	665
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	291, 457
MluCI	AATT	8 cut(s)	23, 120, 181, 247, 665, 701, 706, 745
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	4 cut(s)	288, 531, 625, 690
MroNI	GCCGGC	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	1 cut(s)	748
MslI	CAYNNNNRTG	1 cut(s)	651
MspI	CCGG	3 cut(s)	53, 85, 585
MunI	CAATTG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	56, 406
NaeI	GCCGGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	4 cut(s)	157, 334, 424, 669
NgoMIV	GCCGGC	1 cut(s)	84
NlaIII	CATG	3 cut(s)	508, 650, 664
NlaIV	GGNNCC	2 cut(s)	622, 678
NmuCI	GTSAC	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	509, 561
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	622, 678
PspPI	GGNCC	2 cut(s)	275, 620
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	65, 678
RsaNI	GTAC	2 cut(s)	64, 677
RseI	CAYNNNNRTG	1 cut(s)	651
SaqAI	TTAA	1 cut(s)	748
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	157, 334, 424, 669
Sau96I	GGNCC	2 cut(s)	275, 620
SchI	GAGTC	1 cut(s)	439
SduI	GDGCHC	2 cut(s)	291, 457
SfcI	CTRYAG	2 cut(s)	204, 213
SinI	GGWCC	2 cut(s)	275, 620
SmiMI	CAYNNNNRTG	1 cut(s)	651
Sse9I	AATT	8 cut(s)	23, 120, 181, 247, 665, 701, 706, 745
SsiI	CCGC	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	315
TaqII	GACCGA	1 cut(s)	157
TasI	AATT	8 cut(s)	23, 120, 181, 247, 665, 701, 706, 745
TfiI	GAWTC	2 cut(s)	509, 561
Tru1I	TTAA	1 cut(s)	748
Tru9I	TTAA	1 cut(s)	748
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	341, 384, 649
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	1 cut(s)	213
VpaK11BI	GGWCC	2 cut(s)	275, 620
XapI	RAATTY	2 cut(s)	120, 247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.