FvH4_2g07050

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003043
Physical Location & Seq
Forward (+)
5827707 .. 5829275
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07050.t1

Sequence Viewer

Length: 468 bp
ATGTCATCTGAACTTTTTGGTAAGTTGGAGACTGAAGTTGAAATCAACGCTCCAGCTGCCAAGTACCACGAACTCTTCACGCGCCGGCCACACCACCTTTCCAGTATCAGACCTGATAGAATTCAGAGCTGTGAGTTACTTGAAGGTCAATGGGGACGTCAGGGTTCAGTCATCTACTGGAATTATTGCTATGACGGGAAAACTACGGTGGCTACTGATTTGATTGAAGCGGTAGACGACGAAAAGAATTCTGTGACCTTCAAAGTGATTGATGGACCTCTTCTGGAGCACTACAAGAGCTTCAGGCTCATTGTGGAAGCCACTCCGAAAGGTGACGGGAACAGCTTGGTTCATTTGGCTGTAGAATATGAAAAGCTTCATGACCAAGTTTCAGACCCGCATAGCTTGCTCCAGTTTGTAGCTGATCTCTCCAAAGATATGGGTGCTCACCTCAGTACCCAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

156

Amino Acids

17.51

Weight (kDa)

5.27

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 7 - 152 6.5e-49 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 234
AccII CGCG 1 cut(s) 82
AciI CCGC 2 cut(s) 230, 398
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 2 cut(s) 120, 247
AcuI CTGAAG 2 cut(s) 54, 286
AcyI GRCGYC 1 cut(s) 157
AfaI GTAC 2 cut(s) 65, 457
AgsI TTSAA 4 cut(s) 41, 143, 227, 262
AluBI AGCT 7 cut(s) 56, 129, 300, 345, 376, 405, 422
AluI AGCT 7 cut(s) 56, 129, 300, 345, 376, 405, 422
Alw21I GWGCWC 2 cut(s) 291, 448
Alw26I GTCTC 1 cut(s) 23
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 2 cut(s) 120, 247
Asp700I GAANNNNTTC 1 cut(s) 375
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 344, 440
AvaII GGWCC 1 cut(s) 275
BaeI ACNNNNGTAYC 1 cut(s) 439
Bbv12I GWGCWC 2 cut(s) 291, 448
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BpmI CTGGAG 3 cut(s) 36, 305, 395
BsaHI GRCGYC 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 3 cut(s) 102, 182, 412
BseMII CTCAG 1 cut(s) 466
BseNI ACTGG 3 cut(s) 102, 182, 412
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 291, 448
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 291, 448
Bsp143I GATC 1 cut(s) 424
BspACI CCGC 2 cut(s) 230, 398
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 465
BspFNI CGCG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 3 cut(s) 102, 182, 412
BssAI RCCGGY 1 cut(s) 84
BssMI GATC 1 cut(s) 424
BssNI GRCGYC 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 2 cut(s) 80, 285
BstACI GRCGYC 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 86, 407
BstDEI CTNAG 1 cut(s) 452
BstFNI CGCG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 427
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 2 cut(s) 56, 406
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 439
BsuRI GGCC 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 86, 407
CciI TCATGA 1 cut(s) 379
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 64, 456
CviAII CATG 1 cut(s) 380
CviQI GTAC 2 cut(s) 64, 456
DdeI CTNAG 1 cut(s) 452
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 80, 285
EarI CTCTTC 2 cut(s) 80, 285
Eco47I GGWCC 1 cut(s) 275
Eco57I CTGAAG 2 cut(s) 54, 286
EcoRI GAATTC 2 cut(s) 120, 247
FaeI CATG 1 cut(s) 383
FaiI YATR 5 cut(s) 192, 369, 381, 402, 440
FaqI GGGAC 1 cut(s) 168
FatI CATG 1 cut(s) 379
FauI CCCGC 1 cut(s) 405
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 3 cut(s) 36, 305, 395
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 85
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 1 cut(s) 383
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 374
HpaII CCGG 1 cut(s) 85
HphI GGTGA 2 cut(s) 344, 440
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 5 cut(s) 10, 110, 126, 327, 394
Hpy188III TCNNGA 2 cut(s) 284, 380
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 137, 268
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 406
HpyF3I CTNAG 1 cut(s) 452
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 1 cut(s) 383
HspAI GCGC 1 cut(s) 82
KroI GCCGGC 1 cut(s) 84
KroNI GCCGGC 1 cut(s) 86
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 3 cut(s) 55, 286, 414
LpnPI CCDG 9 cut(s) 66, 98, 115, 126, 146, 163, 269, 289, 425
Lsp1109I GCAGC 1 cut(s) 43
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 3 cut(s) 135, 253, 332
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 2 cut(s) 67, 272
MhlI GDGCHC 2 cut(s) 291, 448
MluCI AATT 3 cut(s) 120, 181, 247
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 2 cut(s) 288, 461
MroNI GCCGGC 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 85
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 56, 406
NaeI GCCGGC 1 cut(s) 86
NdeII GATC 1 cut(s) 424
NgoMIV GCCGGC 1 cut(s) 84
NlaIII CATG 1 cut(s) 383
NmuCI GTSAC 2 cut(s) 253, 332
PagI TCATGA 1 cut(s) 379
PdiI GCCGGC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 375
PkrI GCNGC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 2 cut(s) 65, 457
RsaNI GTAC 2 cut(s) 64, 456
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 1 cut(s) 275
SduI GDGCHC 2 cut(s) 291, 448
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 1 cut(s) 275
Sse9I AATT 3 cut(s) 120, 181, 247
SsiI CCGC 2 cut(s) 230, 398
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 160
TasI AATT 3 cut(s) 120, 181, 247
TseFI GTSAC 2 cut(s) 253, 332
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 2 cut(s) 253, 332
TspDTI ATGAA 3 cut(s) 341, 368, 384
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 120, 247
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 375
ZraI GACGTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.