Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003043

Physical Location & Seq

Genomic Coordinates Forward (+)

5848064 .. 5849579

Gene Structure 1516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAAGGTTGAAGAAGCAAGAAGCACAAACTTCAATCTGCATTCTCTCACTTGTGCCGGCCCATTTCGCCCAAACCCAACAGCGGACCCGACCCGCCAAACTGAGTTTCTTCTTCTTCGTAGCGACTCTGTCTTTCTCTCATTTTATTTTCAGTCCCAGCTGTTCTCCATGGATTCGCAGACCCAGAACACGTCGTTGCAGAGGCTTCAAAATGTCGAGAAGAGAATCGTGAAGGTTTTGGAGCTGGCCGGAAGTGTGATGGACGAACTCGCAAACCCTACTGGTCCCAGAAGGGAGTCCATCAACAACCATGTCCGCGAGTTCATGCAATTGATCAAGGATATTCAAATGGCACTGCGGGATGAAATCAAGAGTGCGTGTGATTACCGTCCGTTTGAGAAGTGTGATTACAGCGCAAGAATAGCTAATGAGATCTGTTGCAAGAAACTGGAACATGTCATGTCACAGTTGGATGGAATGAAGGAAACAATAGATGATTATCATACTGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med11

Protein Analysis

172

Amino Acids

19.72

Weight (kDa)

5.82

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med11	PF10280	64 - 165	2.4e-19	Mediator complex protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01435 AT3G01435 AT3G01435 AT3G01435
fragaria_vesca	FvH4_2g07050 FvH4_2g07070
malus_domestica	MD10G1088300.v1.1
prunus_persica	Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G115200_v2.0.a1
pyrus_communis	pycom10g07060
rosa_chinensis	RchiOBHm_Chr6g0259451 RchiOBHm_Chr6g0259461 RchiOBHm_Chr7g0240711
rosa_laevigata	RLG00000000624 RLG00000014531 RLG00000014532 RLG00000014533
rosa_multiflora	Rmu_sc0006836.1_g000001 Rmu_sc0006836.1_g000005 Rmu_ssc0000050.1_g000040
rosa_roxburghii	Rroxscaffold_3G00219640 Rroxscaffold_7G00206730 Rroxscaffold_7G00206740
rosa_rugosa	Rorug05G0588800 Rorug05G0588900 Rorug07G0338400
rosa_samantha	Rh6AG104700 Rh6BG097800 Rh6CG093800 Rh6DG087700 Rh7AG493100 Rh7BG465100
rosa_wichuraiana	Rw6G009040 Rw6G009060 Rw6G009070 Rw7G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	318
AciI	CCGC	4 cut(s)	83, 94, 316, 358
AcoI	YGGCCR	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	2 cut(s)	189, 454
AgsI	TTSAA	4 cut(s)	11, 34, 209, 347
AjiI	CACGTC	1 cut(s)	192
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	3 cut(s)	160, 244, 425
AluI	AGCT	3 cut(s)	160, 244, 425
AoxI	GGCC	2 cut(s)	58, 246
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	3 cut(s)	59, 85, 284
AvaII	GGWCC	2 cut(s)	85, 284
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BccI	CCATC	3 cut(s)	253, 308, 467
BclI	TGATCA	1 cut(s)	333
BglII	AGATCT	1 cut(s)	432
Bme18I	GGWCC	2 cut(s)	85, 284
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	3 cut(s)	59, 85, 284
BmiI	GGNNCC	2 cut(s)	87, 286
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	286, 453
Bse8I	GATNNNNATC	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	367, 478
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	286, 453
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	318
BshFI	GGCC	2 cut(s)	60, 248
BsiSI	CCGG	2 cut(s)	57, 249
BslFI	GGGAC	2 cut(s)	139, 270
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	139, 270
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	60, 248
Bsp143I	GATC	2 cut(s)	333, 432
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	4 cut(s)	83, 94, 316, 358
BspANI	GGCC	2 cut(s)	60, 248
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	87, 286
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	286, 453
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	333, 432
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	389, 468
Bst6I	CTCTTC	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	58, 246
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	367, 478
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	2 cut(s)	336, 435
BstMBI	GATC	2 cut(s)	333, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 422
BstNSI	RCATGY	1 cut(s)	458
BstUI	CGCG	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	60, 248
BtgI	CCRYGG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	367, 478
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	58, 246
CfoI	GCGC	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	3 cut(s)	59, 85, 284
CviAII	CATG	5 cut(s)	169, 311, 325, 455, 460
CviJI	RGCY	6 cut(s)	60, 160, 205, 244, 248, 425
CviKI_1	RGCY	6 cut(s)	60, 160, 205, 244, 248, 425
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	335, 434
DpnII	GATC	2 cut(s)	333, 432
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	85, 284
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	5 cut(s)	172, 314, 328, 458, 463
FaiI	YATR	6 cut(s)	170, 312, 326, 456, 461, 504
FaqI	GGGAC	2 cut(s)	139, 270
FatI	CATG	5 cut(s)	168, 310, 324, 454, 459
FauI	CCCGC	2 cut(s)	101, 351
FbaI	TGATCA	1 cut(s)	333
FokI	GGATG	2 cut(s)	374, 485
GlaI	GCGC	1 cut(s)	415
GsaI	CCCAGC	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	60, 248
HapII	CCGG	2 cut(s)	57, 249
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	5 cut(s)	172, 314, 328, 458, 463
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HinfI	GANTC	4 cut(s)	125, 173, 225, 296
HpaII	CCGG	2 cut(s)	57, 249
Hpy188III	TCNNGA	3 cut(s)	217, 229, 370
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	226, 285, 475
HpyCH4III	ACNGT	2 cut(s)	389, 468
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	40, 199, 328, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 422
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	5 cut(s)	172, 314, 328, 458, 463
HspAI	GCGC	1 cut(s)	414
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	333, 432
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	8 cut(s)	70, 170, 197, 230, 262, 267, 301, 434
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	462
MalI	GATC	2 cut(s)	335, 434
MboI	GATC	2 cut(s)	333, 432
MboII	GAAGA	5 cut(s)	23, 101, 104, 107, 232
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	1 cut(s)	432
MluCI	AATT	1 cut(s)	329
MlyI	GAGTC	2 cut(s)	119, 305
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	1 cut(s)	195
MroNI	GCCGGC	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	83, 160
MspI	CCGG	2 cut(s)	57, 249
MunI	CAATTG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	40
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	66, 422
NaeI	GCCGGC	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	2 cut(s)	333, 432
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	5 cut(s)	172, 314, 328, 458, 463
NlaIV	GGNNCC	2 cut(s)	87, 286
NmuCI	GTSAC	1 cut(s)	462
NspI	RCATGY	1 cut(s)	458
PciI	ACATGT	1 cut(s)	454
PctI	GAATGC	1 cut(s)	40
PdiI	GCCGGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	173, 225
PflFI	GACNNNGTC	1 cut(s)	128
PleI	GAGTC	2 cut(s)	119, 304
PpsI	GAGTC	2 cut(s)	119, 304
PscI	ACATGT	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	87, 286
PspPI	GGNCC	3 cut(s)	59, 85, 284
PsuI	RGATCY	1 cut(s)	432
PsyI	GACNNNGTC	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	160
Sau3AI	GATC	2 cut(s)	333, 432
Sau96I	GGNCC	3 cut(s)	59, 85, 284
SchI	GAGTC	2 cut(s)	119, 305
SetI	ASST	6 cut(s)	9, 162, 194, 237, 246, 427
SinI	GGWCC	2 cut(s)	85, 284
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	4 cut(s)	83, 94, 316, 358
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	389, 468
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	173, 225
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	462
Tsp45I	GTSAC	1 cut(s)	462
TspDTI	ATGAA	4 cut(s)	17, 313, 378, 494
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	1 cut(s)	360
Tth111I	GACNNNGTC	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	85, 284
XceI	RCATGY	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.