Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003043

Physical Location & Seq

Genomic Coordinates Forward (+)

1717271 .. 1721108

Gene Structure 3838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGATTCGCAGACCCAGAACACGTCGTTGCAGAGGCTTCAAAATGTGGAGAAGAGAATCGTGAAGGTTTTGGAGCTGGCCGCAAGTGTGATGGACGAGCTTGCAAACCGTGCTGGTGCCAGAAGGGAGTCCATCAACAACCATGTCCGCCAGTTCATGCAATTCATCAAAGATATTCAAATGGCATCGCGGGATGAAATCAAAAGTGCGTGTGCGTGTGATTACCGTCCATTTGAGAAGTGTGATTACAGTTCAAGAATAGCTAACGAGATCTGTTGCAAGAAACTGGAATATGTCATGTCACAGTTAGATGGAATGAAAGAAACAATAGATGATTATCATACTGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med11

Protein Analysis

117

Amino Acids

13.53

Weight (kDa)

6.11

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med11	PF10280	8 - 111	6.6e-15	Mediator complex protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01435 AT3G01435 AT3G01435 AT3G01435
fragaria_vesca	FvH4_2g07050 FvH4_2g07070
malus_domestica	MD10G1088300.v1.1
prunus_persica	Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G114900_v2.0.a1 Prupe.8G115200_v2.0.a1
pyrus_communis	pycom10g07060
rosa_chinensis	RchiOBHm_Chr6g0259451 RchiOBHm_Chr6g0259461 RchiOBHm_Chr7g0240711
rosa_laevigata	RLG00000000624 RLG00000014531 RLG00000014532 RLG00000014533
rosa_multiflora	Rmu_sc0006836.1_g000001 Rmu_sc0006836.1_g000005 Rmu_ssc0000050.1_g000040
rosa_roxburghii	Rroxscaffold_3G00219640 Rroxscaffold_7G00206730 Rroxscaffold_7G00206740
rosa_rugosa	Rorug05G0588800 Rorug05G0588900 Rorug07G0338400
rosa_samantha	Rh6AG104700 Rh6BG097800 Rh6CG093800 Rh6DG087700 Rh7AG493100 Rh7BG465100
rosa_wichuraiana	Rw6G009040 Rw6G009060 Rw6G009070 Rw7G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	116
AccII	CGCG	1 cut(s)	190
AciI	CCGC	3 cut(s)	81, 148, 190
AcoI	YGGCCR	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	41, 179, 255
AjiI	CACGTC	1 cut(s)	24
AluBI	AGCT	3 cut(s)	76, 100, 263
AluI	AGCT	3 cut(s)	76, 100, 263
AoxI	GGCC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BccI	CCATC	3 cut(s)	85, 140, 305
BfmI	CTRYAG	1 cut(s)	345
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	24
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	336
Bse1I	ACTGG	2 cut(s)	151, 291
Bse8I	GATNNNNATC	1 cut(s)	336
BseGI	GGATG	1 cut(s)	199
BseJI	GATNNNNATC	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	151, 291
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	3 cut(s)	81, 148, 190
BspANI	GGCC	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	151, 291
BssMI	GATC	1 cut(s)	270
Bst4CI	ACNGT	4 cut(s)	110, 227, 251, 306
Bst6I	CTCTTC	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	78, 102
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	80
BtgZI	GCGATG	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	78, 102
CviAII	CATG	3 cut(s)	143, 157, 298
CviJI	RGCY	5 cut(s)	37, 76, 80, 100, 263
CviKI_1	RGCY	5 cut(s)	37, 76, 80, 100, 263
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	137
FaeI	CATG	3 cut(s)	146, 160, 301
FaiI	YATR	5 cut(s)	144, 158, 294, 299, 342
FatI	CATG	3 cut(s)	142, 156, 297
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	146, 160, 301
HinfI	GANTC	3 cut(s)	5, 57, 128
Hpy188III	TCNNGA	2 cut(s)	61, 255
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	58, 117
HpyCH4III	ACNGT	4 cut(s)	110, 227, 251, 306
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	31, 104, 160, 279, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	146, 160, 301
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	29, 62, 99, 133, 164, 272
LweI	GCATC	1 cut(s)	194
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	270
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	1 cut(s)	27
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	3 cut(s)	146, 160, 301
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	5, 57
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	270
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	137
SetI	ASST	5 cut(s)	26, 69, 78, 102, 265
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	1 cut(s)	345
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	81, 148, 190
TaaI	ACNGT	4 cut(s)	110, 227, 251, 306
TaiI	ACGT	1 cut(s)	26
TasI	AATT	1 cut(s)	161
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	5, 57
TseFI	GTSAC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	4 cut(s)	145, 154, 210, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.