AT3G07550

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005714
Physical Location & Seq
Forward (+)
2409477 .. 2411329
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07550.1

Sequence Viewer

Length: 1188 bp
ATGGAAGATGTGTCCGAGTCTGATAATAATGTTGAGACCTCCATTATCCACCTTCCAGATGATTGCCTTTCCTTTATCTTTCAACGACTTGATAGTGTTGCTGACCATGATTCATTTGGTTTGACTTGTCATCGCTGGCTCAACATCCAAAACATTAGCCGTCGCTCTTTACAGTTCCAGTGTTCTTTCTCTGTCCTGAACCCTTCAAGTCTGTCTCAGACAAATCCTGATGTGAGCTCTCATCATCTCCACAGGCTTCTTACTCGGTTTCAGTGGTTGGAGCATCTTTCGCTTTCTGGCTGCACTGTGCTGAATGATTCGAGTCTCGACTCCCTCAGGTATCCCGGTGCAAGACTGCATACTCTTTACTTAGATTGTTGCTTTGGGATTTCTGATGATGGGATCTCCACTATTGCTAGCTTTTGTCCCAATCTAAGTGTGGTTAGTCTTTACCGCTGCAATATCAGTGACATTGGGTTAGAAACGTTGGCCAGGGCTTCCTTGTCTCTAAAATGCGTGAATCTCTCGTACTGCCCGCTGGTATCTGATTTTGGGATAAAAGCGTTGTCACAAGCATGCTTGCAGCTTGAGTCAGTGAAAATCTCAAACTGCAAGAGCATTACCGGTGTTGGCTTTAGTGGCTGTTCTCCAACTCTAGGCTATGTGGATGCTGACTCTTGTCAGCTTGAGCCGAAGGGTATAACGGGGATCATTAGCGGAGGTGGGATTGAGTTTCTAAACATTTCAGGTGTAAGTTGCTACATTCGCAAAGATGGGTTGGTACCTATTGGATCTGGAATTGCATCAAAACTTAGAATCTTGAACCTTAGGATGTGCAGAACGGTTGGTGATGAATCCATTGAAGCTATAGCAAAAGGTTGTCCATTGCTCCAAGAGTGGAACTTGGCTCTTTGTCATGAAGTTAAGATTTCGGGATGGGAAGCCGTAGGGAAGTGGTGCCGTAACTTGAAGAAACTCCATGTGAACCGTTGTAGGAACTTATGTGACCAAGGGTTGCTTGCTCTACGATGCGGTTGCATGAACCTCCAGATTCTCTACATGAACGGGAACGCGAGGCTGACCCCTACAGCAATTGAGATGTTCAGATTACATAGAGCCGATATAACACTAAGAACAGAAGAAATGATGGTCATAGGACCAGACTGGAGACTATATGCACAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

395

Amino Acids

43.68

Weight (kDa)

6.26

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 90 - 209 9.3e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 781
AccB1I GGYRCC 2 cut(s) 781, 957
AccII CGCG 1 cut(s) 1073
AciI CCGC 4 cut(s) 454, 536, 717, 1032
AclI AACGTT 1 cut(s) 485
AclWI GGATC 3 cut(s) 410, 716, 799
AcoI YGGCCR 1 cut(s) 489
AfaI GTAC 2 cut(s) 530, 783
AfiI CCNNNNNNNGG 1 cut(s) 656
AgeI ACCGGT 1 cut(s) 623
AgsI TTSAA 5 cut(s) 83, 207, 823, 863, 970
AjnI CCWGG 1 cut(s) 491
AluBI AGCT 5 cut(s) 237, 420, 586, 685, 866
AluI AGCT 5 cut(s) 237, 420, 586, 685, 866
Alw21I GWGCWC 1 cut(s) 239
Alw26I GTCTC 5 cut(s) 29, 219, 329, 510, 1162
AlwI GGATC 3 cut(s) 410, 716, 799
AoxI GGCC 1 cut(s) 489
ApeKI GCWGC 3 cut(s) 300, 456, 583
AsiGI ACCGGT 1 cut(s) 623
Asp718I GGTACC 1 cut(s) 781
AspS9I GGNCC 1 cut(s) 1157
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 860
AsuNHI GCTAGC 1 cut(s) 416
AvaII GGWCC 1 cut(s) 1157
AxyI CCTNAGG 2 cut(s) 335, 827
BalI TGGCCA 1 cut(s) 491
BanI GGYRCC 2 cut(s) 781, 957
BanII GRGCYC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 3 cut(s) 287, 443, 595
BccI CCATC 4 cut(s) 392, 767, 930, 1141
BceAI ACGGC 3 cut(s) 144, 929, 945
BcgI CGANNNNNNTGC 2 cut(s) 1017, 1051
BciT130I CCWGG 1 cut(s) 493
BciVI GTATCC 1 cut(s) 351
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 5 cut(s) 29, 219, 329, 510, 1162
BfaI CTAG 2 cut(s) 417, 656
BfmI CTRYAG 2 cut(s) 867, 1086
BfuI GTATCC 1 cut(s) 351
BisI GCNGC 3 cut(s) 301, 457, 584
BlsI GCNGC 3 cut(s) 302, 458, 585
Bme1390I CCNGG 2 cut(s) 345, 493
Bme18I GGWCC 1 cut(s) 1157
BmgT120I GGNCC 1 cut(s) 1157
BmiI GGNNCC 2 cut(s) 783, 959
BmrFI CCNGG 2 cut(s) 345, 493
BmsI GCATC 4 cut(s) 292, 658, 812, 1019
BmtI GCTAGC 1 cut(s) 420
BoxI GACNNNNGTC 1 cut(s) 678
BpmI CTGGAG 2 cut(s) 1031, 1186
BpuEI CTTGAG 2 cut(s) 608, 707
BpuMI CCSGG 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 492, 1009
BsaWI WCCGGW 1 cut(s) 623
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse118I RCCGGY 1 cut(s) 623
Bse1I ACTGG 2 cut(s) 178, 1169
Bse21I CCTNAGG 2 cut(s) 335, 827
Bse3DI GCAATG 1 cut(s) 884
BseBI CCWGG 1 cut(s) 493
BseDI CCNNGG 2 cut(s) 492, 1009
BseGI GGATG 4 cut(s) 144, 673, 837, 941
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMI GCAATG 1 cut(s) 884
BseMII CTCAG 2 cut(s) 230, 349
BseNI ACTGG 2 cut(s) 178, 1169
BseXI GCAGC 3 cut(s) 287, 443, 595
BsgI GTGCAG 2 cut(s) 286, 856
Bsh1236I CGCG 1 cut(s) 1073
BshFI GGCC 1 cut(s) 491
BshNI GGYRCC 2 cut(s) 781, 957
BshTI ACCGGT 1 cut(s) 623
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 2 cut(s) 345, 624
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 5 cut(s) 29, 219, 329, 510, 1162
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 1 cut(s) 491
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 3 cut(s) 402, 708, 791
BspACI CCGC 4 cut(s) 454, 536, 717, 1032
BspANI GGCC 1 cut(s) 491
BspCNI CTCAG 2 cut(s) 229, 348
BspFNI CGCG 1 cut(s) 1073
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 2 cut(s) 783, 959
BspOI GCTAGC 1 cut(s) 420
BspPI GGATC 3 cut(s) 410, 716, 799
BspT107I GGYRCC 2 cut(s) 781, 957
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 884
BsrFI RCCGGY 1 cut(s) 623
BsrI ACTGG 2 cut(s) 178, 1169
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 2 cut(s) 492, 1009
BssMI GATC 3 cut(s) 402, 708, 791
BssT1I CCWWGG 1 cut(s) 1009
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 4 cut(s) 174, 307, 844, 989
BstC8I GCNNGC 6 cut(s) 137, 418, 536, 577, 581, 1020
BstDEI CTNAG 7 cut(s) 216, 335, 370, 434, 812, 827, 1130
BstF5I GGATG 4 cut(s) 144, 673, 837, 941
BstFNI CGCG 1 cut(s) 1073
BstKTI GATC 3 cut(s) 405, 711, 794
BstMAI GTCTC 5 cut(s) 29, 219, 329, 510, 1162
BstMBI GATC 3 cut(s) 402, 708, 791
BstMWI GCNNNNNNNGC 3 cut(s) 289, 639, 765
BstNI CCWGG 1 cut(s) 493
BstNSI RCATGY 1 cut(s) 579
BstPAI GACNNNNGTC 1 cut(s) 678
BstSCI CCNGG 2 cut(s) 343, 491
BstSFI CTRYAG 2 cut(s) 867, 1086
BstUI CGCG 1 cut(s) 1073
BstV1I GCAGC 3 cut(s) 287, 443, 595
BstX2I RGATCY 2 cut(s) 402, 791
BstYI RGATCY 2 cut(s) 402, 791
Bsu36I CCTNAGG 2 cut(s) 335, 827
BsuI GTATCC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 491
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 4 cut(s) 144, 673, 837, 941
BtsIMutI CAGTG 5 cut(s) 185, 278, 303, 472, 600
Cac8I GCNNGC 6 cut(s) 137, 418, 536, 577, 581, 1020
CciI TCATGA 1 cut(s) 916
Cfr10I RCCGGY 1 cut(s) 623
Cfr13I GGNCC 1 cut(s) 1157
Csp6I GTAC 2 cut(s) 529, 782
CspAI ACCGGT 1 cut(s) 623
CviAII CATG 6 cut(s) 107, 576, 917, 980, 1039, 1060
CviQI GTAC 2 cut(s) 529, 782
DdeI CTNAG 7 cut(s) 216, 335, 370, 434, 812, 827, 1130
DpnI GATC 3 cut(s) 404, 710, 793
DpnII GATC 3 cut(s) 402, 708, 791
EaeI YGGCCR 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 1009
Eco24I GRGCYC 1 cut(s) 239
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 1157
Eco53kI GAGCTC 1 cut(s) 237
Eco81I CCTNAGG 2 cut(s) 335, 827
EcoICRI GAGCTC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 1009
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 1009
FaeI CATG 6 cut(s) 110, 579, 920, 983, 1042, 1063
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 1 cut(s) 411
FatI CATG 6 cut(s) 106, 575, 916, 979, 1038, 1059
FauI CCCGC 1 cut(s) 543
Fnu4HI GCNGC 3 cut(s) 301, 457, 584
FokI GGATG 4 cut(s) 131, 680, 844, 948
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 3 cut(s) 301, 457, 584
FspBI CTAG 2 cut(s) 417, 656
GluI GCNGC 3 cut(s) 301, 457, 584
GsuI CTGGAG 2 cut(s) 1031, 1186
HaeIII GGCC 1 cut(s) 491
HapII CCGG 2 cut(s) 345, 624
Hin1II CATG 6 cut(s) 110, 579, 920, 983, 1042, 1063
HpaII CCGG 2 cut(s) 345, 624
HphI GGTGA 1 cut(s) 860
Hpy166II GTNNAC 1 cut(s) 985
Hpy188I TCNGA 6 cut(s) 16, 22, 219, 394, 547, 1106
Hpy188III TCNNGA 9 cut(s) 56, 196, 227, 326, 795, 820, 917, 933, 1048
Hpy8I GTNNAC 1 cut(s) 985
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 3 cut(s) 62, 213, 688
HpyCH4III ACNGT 4 cut(s) 174, 307, 844, 989
HpyCH4IV ACGT 1 cut(s) 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 289, 639, 765
HpyF3I CTNAG 7 cut(s) 216, 335, 370, 434, 812, 827, 1130
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 6 cut(s) 110, 579, 920, 983, 1042, 1063
KpnI GGTACC 1 cut(s) 785
Kzo9I GATC 3 cut(s) 402, 708, 791
LmnI GCTCC 2 cut(s) 280, 894
Lsp1109I GCAGC 3 cut(s) 287, 443, 595
LweI GCATC 4 cut(s) 292, 658, 812, 1019
MaeI CTAG 2 cut(s) 417, 656
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 4 cut(s) 467, 567, 962, 1004
MalI GATC 3 cut(s) 404, 710, 793
MboI GATC 3 cut(s) 402, 708, 791
MboII GAAGA 3 cut(s) 17, 982, 1151
MfeI CAATTG 1 cut(s) 1092
MflI RGATCY 2 cut(s) 402, 791
MhlI GDGCHC 1 cut(s) 239
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 2 cut(s) 798, 1092
MluNI TGGCCA 1 cut(s) 491
MlyI GAGTC 5 cut(s) 26, 323, 331, 599, 668
MmeI TCCRAC 2 cut(s) 258, 674
MnlI CCTC 5 cut(s) 49, 344, 713, 1055, 1068
Mox20I TGGCCA 1 cut(s) 491
MscI TGGCCA 1 cut(s) 491
MseI TTAA 1 cut(s) 924
MslI CAYNNNNRTG 1 cut(s) 574
Msp20I TGGCCA 1 cut(s) 491
MspA1I CMGCKG 2 cut(s) 456, 538
MspI CCGG 2 cut(s) 345, 624
MspR9I CCNGG 2 cut(s) 345, 493
MunI CAATTG 1 cut(s) 1092
MvaI CCWGG 1 cut(s) 493
MvnI CGCG 1 cut(s) 1073
MwoI GCNNNNNNNGC 3 cut(s) 289, 639, 765
NciI CCSGG 1 cut(s) 345
NdeII GATC 3 cut(s) 402, 708, 791
NheI GCTAGC 1 cut(s) 416
NlaIII CATG 6 cut(s) 110, 579, 920, 983, 1042, 1063
NlaIV GGNNCC 2 cut(s) 783, 959
NmuCI GTSAC 3 cut(s) 467, 567, 1004
NspI RCATGY 1 cut(s) 579
PaeI GCATGC 1 cut(s) 579
PagI TCATGA 1 cut(s) 916
PfeI GAWTC 6 cut(s) 110, 317, 520, 816, 854, 1051
PinAI ACCGGT 1 cut(s) 623
PkrI GCNGC 3 cut(s) 302, 458, 585
PleI GAGTC 5 cut(s) 25, 323, 330, 598, 668
PpsI GAGTC 5 cut(s) 25, 323, 330, 598, 668
PshAI GACNNNNGTC 1 cut(s) 678
Psp124BI GAGCTC 1 cut(s) 239
Psp1406I AACGTT 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 2 cut(s) 783, 959
PspPI GGNCC 1 cut(s) 1157
PsuI RGATCY 2 cut(s) 402, 791
RsaI GTAC 2 cut(s) 530, 783
RsaNI GTAC 2 cut(s) 529, 782
RseI CAYNNNNRTG 1 cut(s) 574
SacI GAGCTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 924
SatI GCNGC 3 cut(s) 301, 457, 584
Sau3AI GATC 3 cut(s) 402, 708, 791
Sau96I GGNCC 1 cut(s) 1157
SchI GAGTC 5 cut(s) 26, 323, 331, 599, 668
ScrFI CCNGG 2 cut(s) 345, 493
SduI GDGCHC 1 cut(s) 239
SfaNI GCATC 4 cut(s) 292, 658, 812, 1019
SfcI CTRYAG 2 cut(s) 867, 1086
SinI GGWCC 1 cut(s) 1157
SmiMI CAYNNNNRTG 1 cut(s) 574
SmlI CTYRAG 2 cut(s) 587, 686
SmoI CTYRAG 2 cut(s) 587, 686
SphI GCATGC 1 cut(s) 579
Sse9I AATT 2 cut(s) 798, 1092
SsiI CCGC 4 cut(s) 454, 536, 717, 1032
SspMI CTAG 2 cut(s) 417, 656
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 343, 491
StyI CCWWGG 1 cut(s) 1009
TaaI ACNGT 4 cut(s) 174, 307, 844, 989
TaiI ACGT 1 cut(s) 488
TaqI TCGA 2 cut(s) 320, 327
TasI AATT 2 cut(s) 798, 1092
TfiI GAWTC 6 cut(s) 110, 317, 520, 816, 854, 1051
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 5 cut(s) 185, 278, 310, 472, 600
TseFI GTSAC 3 cut(s) 467, 567, 1004
TseI GCWGC 3 cut(s) 300, 456, 583
Tsp45I GTSAC 3 cut(s) 467, 567, 1004
TspDTI ATGAA 5 cut(s) 102, 867, 933, 1055, 1076
TspRI CASTG 5 cut(s) 185, 278, 310, 472, 600
VpaK11BI GGWCC 1 cut(s) 1157
XceI RCATGY 1 cut(s) 579
XcmI CCANNNNNNNNNTGG 2 cut(s) 113, 436
XspI CTAG 2 cut(s) 417, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.