Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005714

Physical Location & Seq

Genomic Coordinates Forward (+)

23243658 .. 23244810

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1146000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACTTGGCTGATGATTGTCTCATCTTTATTTTCCAATGCCTTGTTTCTGGCTCTGACCGTGAATCCTTTGGCTTGACTTGTCATCGATGTCTTCGTGTTCAAAATCTTAGTCGTCGATCCTTACAGTTTCAATGTTCATTCAAACAACTTGACATTTCTTCATTATCACTTTCAGCATTTACACTTGTTGTCCCTATCTGGGTGCACAGAACTACCAGATTCAGGCTTGTCCCACTTGGTAATCTGGAGTCTACTGGTTGCCCCTCGTTGCAAGTTATCAGCCTTTACCGTTGCCAAATTACTGATTTTGGGTTAGGAAATTTGGATAAGTCTTGCTCAGTTTTAAAGGATGTGAATCTATTGTACTGCTATTTTATTTCTGACTGTGGGCTAAAAGCTCTTTCACAAGGTTGTCGTCAACTTCAAGCGGTTAAGATATCACATTGCAAGGGCATAACTGGTGTTGGCTTTAAAGGTTCCTCATCAACTTTAGCTTATGTAGGAGCCAAATCATGTAAGCTTGAGCCAGAATGTCTTTTGGGAATTGTTAGTGGGGGCGGGATTGAATGTATCTTGCAAAATTGTAGAAATGGCTTGGCAGCGATTGGGAGAGGATTTGCCTTCCGCCTTAAAATTCTTAACCTTCGGCTTTGTAGAACTTTTGGTGACATGTCGATTGTAGCAATTGCAGAAGGTTGTCCACTACTCCATTGTGTCATGAGGTCAAAATTGTGGGATGGTCTTCTATCGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

253

Amino Acids

27.54

Weight (kDa)

8.86

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07550 AT3G07550 AT3G07550
fragaria_vesca	FvH4_2g17281
malus_domestica	MD05G1151800.v1.1 MD10G1146000.v1.1
prunus_persica	Prupe.8G184400_v2.0.a1
pyrus_communis	pycom05g14620
rosa_chinensis	RchiOBHm_Chr5g0064201 RchiOBHm_Chr6g0281791 RchiOBHm_Chr7g0205731
rosa_laevigata	RLG00000008497 RLG00000012934
rosa_multiflora	Rmu_sc0002083.1_g000004 Rmu_ssc0000126.1_g000045
rosa_roxburghii	Rroxscaffold_1G00055070 Rroxscaffold_7G00186800
rosa_rugosa	Rorug04G0090400
rosa_samantha	Rh6AG256500 Rh6BG259500 Rh6CG258400 Rh6DG250500 Rh7AG309600 Rh7CG118900 Rh7CG328800 Rh7CG497900 Rh7DG466000
rosa_wichuraiana	Rw6G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	254
AciI	CCGC	3 cut(s)	431, 561, 628
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	322, 636
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	202, 225
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	5 cut(s)	104, 134, 145, 428, 569
AluBI	AGCT	3 cut(s)	401, 497, 523
AluI	AGCT	3 cut(s)	401, 497, 523
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	26
Alw44I	GTGCAC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	114
ApaLI	GTGCAC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	2 cut(s)	322, 636
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AsuHPI	GGTGA	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	86, 737
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	1 cut(s)	734
BcoDI	GTCTC	1 cut(s)	26
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
BmiI	GGNNCC	2 cut(s)	481, 508
BpiI	GAAGAC	2 cut(s)	86, 737
BpmI	CTGGAG	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	545
Bsa29I	ATCGAT	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 225
Bse1I	ACTGG	2 cut(s)	262, 466
Bse3DI	GCAATG	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	88
BseGI	GGATG	2 cut(s)	358, 745
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	202, 225
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	262, 466
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	614
BshVI	ATCGAT	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	179, 218
BslI	CCNNNNNNNGG	2 cut(s)	202, 225
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	179, 218
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	119
BspACI	CCGC	3 cut(s)	431, 561, 628
BspCNI	CTCAG	1 cut(s)	353
BspDI	ATCGAT	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	720
BspLI	GGNNCC	2 cut(s)	481, 508
BspPI	GGATC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	445
BsrI	ACTGG	2 cut(s)	262, 466
BssMI	GATC	1 cut(s)	119
Bst4CI	ACNGT	4 cut(s)	62, 129, 293, 389
BstDEI	CTNAG	2 cut(s)	110, 340
BstF5I	GGATG	2 cut(s)	358, 745
BstKTI	GATC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	676
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	614
BstV2I	GAAGAC	2 cut(s)	86, 737
Bsu15I	ATCGAT	1 cut(s)	88
BsuTUI	ATCGAT	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	358, 745
CciI	TCATGA	1 cut(s)	720
ClaI	ATCGAT	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	3 cut(s)	516, 673, 721
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	110, 340
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
DraI	TTTAAA	2 cut(s)	348, 475
EciI	GGCGGA	1 cut(s)	617
Eco32I	GATATC	1 cut(s)	441
EcoRV	GATATC	1 cut(s)	441
FaeI	CATG	3 cut(s)	519, 676, 724
FaiI	YATR	5 cut(s)	458, 501, 517, 674, 722
FaqI	GGGAC	2 cut(s)	179, 218
FatI	CATG	3 cut(s)	515, 672, 720
FauI	CCCGC	1 cut(s)	554
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	2 cut(s)	365, 752
Fsp4HI	GCNGC	1 cut(s)	603
GluI	GCNGC	1 cut(s)	603
GsuI	CTGGAG	1 cut(s)	269
Hin1II	CATG	3 cut(s)	519, 676, 724
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	4 cut(s)	65, 222, 251, 358
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	4 cut(s)	208, 255, 422, 704
Hpy188I	TCNGA	2 cut(s)	58, 385
Hpy188III	TCNNGA	3 cut(s)	248, 721, 753
Hpy8I	GTNNAC	4 cut(s)	208, 255, 422, 704
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	3 cut(s)	634, 656, 689
HpyCH4III	ACNGT	4 cut(s)	62, 129, 293, 389
HpyCH4V	TGCA	5 cut(s)	208, 274, 450, 580, 692
HpyF3I	CTNAG	2 cut(s)	110, 340
Hsp92II	CATG	3 cut(s)	519, 676, 724
Kzo9I	GATC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	506
LpnPI	CCDG	8 cut(s)	36, 187, 211, 232, 233, 243, 447, 543
Lsp1109I	GCAGC	1 cut(s)	614
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MboII	GAAGA	3 cut(s)	86, 153, 737
MfeI	CAATTG	1 cut(s)	687
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	7 cut(s)	300, 322, 546, 583, 636, 687, 731
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	277, 493, 608, 717
MseI	TTAA	5 cut(s)	347, 435, 474, 633, 642
MunI	CAATTG	1 cut(s)	687
NdeII	GATC	1 cut(s)	119
NlaIII	CATG	3 cut(s)	519, 676, 724
NlaIV	GGNNCC	2 cut(s)	481, 508
NmuCI	GTSAC	1 cut(s)	668
NspI	RCATGY	1 cut(s)	676
PagI	TCATGA	1 cut(s)	720
PciI	ACATGT	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PfeI	GAWTC	3 cut(s)	65, 222, 358
PkrI	GCNGC	1 cut(s)	604
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	481, 508
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SaqAI	TTAA	5 cut(s)	347, 435, 474, 633, 642
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	8 cut(s)	403, 415, 481, 499, 525, 648, 700, 728
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	7 cut(s)	300, 322, 546, 583, 636, 687, 731
SsiI	CCGC	3 cut(s)	431, 561, 628
TaaI	ACNGT	4 cut(s)	62, 129, 293, 389
TaqI	TCGA	3 cut(s)	88, 118, 677
TasI	AATT	7 cut(s)	300, 322, 546, 583, 636, 687, 731
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	3 cut(s)	65, 222, 358
Tru1I	TTAA	5 cut(s)	347, 435, 474, 633, 642
Tru9I	TTAA	5 cut(s)	347, 435, 474, 633, 642
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	2 cut(s)	129, 153
VneI	GTGCAC	1 cut(s)	206
XapI	RAATTY	2 cut(s)	322, 636
XceI	RCATGY	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.