Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005714

Physical Location & Seq

Genomic Coordinates Forward (+)

28252808 .. 28253983

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1151800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGACTTGCCTGATGATTGCCTCGTCTTTATTTTCCAATGCCTTGATTCTGGCTCTGACCGCGAGTCCTTTGGCTTGACTTGTCATCGATGTCTTCGCATTCAAAATCTTAGTCGTCGATCCTTACAATTTGAATGTTCATTCAAACAACTTGACATTTCTTCATTATCACATTCAAAGACCAATGTTACCATTAGAACCTTCCATCTTCACCGGCTTCTTACCCGTTTTCAACATTTACACTCATTGTCCCTCTCTGGGTGCACAGAGCTACCTGATTCAGGCTTGTCCCACTTGGTAAATTATGGTTCACATTTGCACACCCTTAACCTGGAGTGTTGTTTAGGTATTACCGATCGTGGGTTGTCTATGGTAGCTGCTGGTTGCCCCTCGTTGCAAGTTATCAGCCTTTACCGTTGCCAAATTACTGATTTGGGGTTAGAAAAGTTGGCTAGCTCTTGCTCAGTTCTAAAGGATGTGAATCTCTTGTACTGCTATTTTATTTCTGATCGTGGGCTAAGAGCTATTTCACAAGGCTGTCATCAACTTCAAGCGGTTAAGATATCACATTGTAAGGGCATAACTGGTGTTGGCTTTAATGGTTGCTCATCAACTTTAGCTTATGTAGAAGCCGAATCATGTAAGCTTGAGCCAGACGGTATTTTGGGCATTGTAAGTGGGGGCGGGATTGAATATTTGAATTTATCTGGTTTAATCTTGCAAAATGGCAGAAACGGTTTGGCAGCGATTGGGAGAGGATTTGCCTCCCGTCTTAAAATTCTTAACCTTCGGCTTTGTAGAACTATTGGCGATGAGTCGATTGTAGCAGTTGCAGAATGTTGTCCACTACTTCAAGAATGGAACTTGGCATTGTGTCATGAGGTCAAAATAGTGGGATGGTCATCTATCGGGATGAATTGTCACAAGTTGGAGAAGCTTCACGTCAACCGGTGTCGGAATTTATGTGATCGGGGTTTAGAGGCTTTGCGAAATGGATGCAAACAACTATCCGTTTTGTACATGAACGGTTGTCCTAAGATTACTTCAACAGCAATAGAGTTGTTCAAATGTTACAGGAGTGATGTTACCATTAAGAATGAAGAGAAAATGTGTATAGGTCCCATCTGGGAATTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

380

Amino Acids

41.89

Weight (kDa)

8.21

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	74 - 200	7.1e-09	Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885	PF25372	121 - 276	4.8e-08	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07550 AT3G07550 AT3G07550
fragaria_vesca	FvH4_2g17281
malus_domestica	MD05G1151800.v1.1 MD10G1146000.v1.1
prunus_persica	Prupe.8G184400_v2.0.a1
pyrus_communis	pycom05g14620
rosa_chinensis	RchiOBHm_Chr5g0064201 RchiOBHm_Chr6g0281791 RchiOBHm_Chr7g0205731
rosa_laevigata	RLG00000008497 RLG00000012934
rosa_multiflora	Rmu_sc0002083.1_g000004 Rmu_ssc0000126.1_g000045
rosa_roxburghii	Rroxscaffold_1G00055070 Rroxscaffold_7G00186800
rosa_rugosa	Rorug04G0090400
rosa_samantha	Rh6AG256500 Rh6BG259500 Rh6CG258400 Rh6DG250500 Rh7AG309600 Rh7CG118900 Rh7CG328800 Rh7CG497900 Rh7DG466000
rosa_wichuraiana	Rw6G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	63
AciI	CCGC	3 cut(s)	61, 554, 684
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	700, 777, 958
AfaI	GTAC	2 cut(s)	491, 1019
AfiI	CCNNNNNNNGG	4 cut(s)	258, 281, 331, 360
AgeI	ACCGGT	1 cut(s)	948
AhdI	GACNNNNNGTC	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	943
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	7 cut(s)	271, 377, 456, 524, 620, 646, 937
AluI	AGCT	7 cut(s)	271, 377, 456, 524, 620, 646, 937
Alw21I	GWGCWC	1 cut(s)	266
Alw44I	GTGCAC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	114
ApaLI	GTGCAC	1 cut(s)	262
ApeKI	GCWGC	2 cut(s)	377, 743
ApoI	RAATTY	3 cut(s)	700, 777, 958
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AsiGI	ACCGGT	1 cut(s)	948
AspS9I	GGNCC	1 cut(s)	1118
AsuHPI	GGTGA	1 cut(s)	203
AsuNHI	GCTAGC	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	1118
BaeGI	GKGCMC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	364, 755
BccI	CCATC	3 cut(s)	213, 891, 1130
BcgI	CGANNNNNNTGC	2 cut(s)	978, 1012
BciT130I	CCWGG	1 cut(s)	332
BfaI	CTAG	1 cut(s)	453
BisI	GCNGC	2 cut(s)	378, 744
BlsI	GCNGC	2 cut(s)	379, 745
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	1118
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	943
BmgT120I	GGNCC	1 cut(s)	1118
BmiI	GGNNCC	1 cut(s)	1120
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	986
BmtI	GCTAGC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	668
Bsa29I	ATCGAT	1 cut(s)	88
BsaBI	GATNNNNATC	2 cut(s)	480, 901
BsaWI	WCCGGW	1 cut(s)	948
Bsc4I	CCNNNNNNNGG	4 cut(s)	258, 281, 331, 360
Bse118I	RCCGGY	2 cut(s)	213, 948
Bse1I	ACTGG	1 cut(s)	589
Bse8I	GATNNNNATC	2 cut(s)	480, 901
BseBI	CCWGG	1 cut(s)	332
BseCI	ATCGAT	1 cut(s)	88
BseGI	GGATG	4 cut(s)	481, 902, 918, 1001
BseJI	GATNNNNATC	2 cut(s)	480, 901
BseLI	CCNNNNNNNGG	4 cut(s)	258, 281, 331, 360
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	589
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	364, 755
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	358
BshTI	ACCGGT	1 cut(s)	948
BshVI	ATCGAT	1 cut(s)	88
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	214, 949
BslFI	GGGAC	3 cut(s)	235, 274, 1104
BslI	CCNNNNNNNGG	4 cut(s)	258, 281, 331, 360
BsmFI	GGGAC	3 cut(s)	235, 274, 1104
BsmI	GAATGC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp143I	GATC	4 cut(s)	119, 355, 508, 967
BspACI	CCGC	3 cut(s)	61, 554, 684
BspCNI	CTCAG	1 cut(s)	476
BspDI	ATCGAT	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	877
BspLI	GGNNCC	1 cut(s)	1120
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	114
BsrFI	RCCGGY	2 cut(s)	213, 948
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	2 cut(s)	213, 948
BssMI	GATC	4 cut(s)	119, 355, 508, 967
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	4 cut(s)	416, 659, 737, 1028
Bst6I	CTCTTC	1 cut(s)	1095
BstAUI	TGTACA	1 cut(s)	1017
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	4 cut(s)	110, 463, 518, 1035
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	4 cut(s)	481, 902, 918, 1001
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	4 cut(s)	122, 358, 511, 970
BstMBI	GATC	4 cut(s)	119, 355, 508, 967
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	266
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	364, 755
BstV2I	GAAGAC	1 cut(s)	86
Bsu15I	ATCGAT	1 cut(s)	88
BsuTUI	ATCGAT	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	825
BtrI	CACGTC	1 cut(s)	943
BtsCI	GGATG	4 cut(s)	481, 902, 918, 1001
Cac8I	GCNNGC	1 cut(s)	454
CciI	TCATGA	1 cut(s)	877
Cfr10I	RCCGGY	2 cut(s)	213, 948
Cfr13I	GGNCC	1 cut(s)	1118
ClaI	ATCGAT	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	490, 1018
CspAI	ACCGGT	1 cut(s)	948
CviAII	CATG	3 cut(s)	639, 878, 1021
CviQI	GTAC	2 cut(s)	490, 1018
DdeI	CTNAG	4 cut(s)	110, 463, 518, 1035
DpnI	GATC	4 cut(s)	121, 357, 510, 969
DpnII	GATC	4 cut(s)	119, 355, 508, 967
DriI	GACNNNNNGTC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	1095
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	1095
Eco32I	GATATC	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	1118
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	1118
EcoRII	CCWGG	1 cut(s)	330
EcoRV	GATATC	1 cut(s)	564
FaeI	CATG	3 cut(s)	642, 881, 1024
FaiI	YATR	9 cut(s)	306, 371, 581, 624, 640, 879, 964, 1022, 1115
FaqI	GGGAC	3 cut(s)	235, 274, 1104
FatI	CATG	3 cut(s)	638, 877, 1020
FauI	CCCGC	1 cut(s)	677
Fnu4HI	GCNGC	2 cut(s)	378, 744
FokI	GGATG	4 cut(s)	488, 909, 925, 1008
Fsp4HI	GCNGC	2 cut(s)	378, 744
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	2 cut(s)	378, 744
GsuI	CTGGAG	1 cut(s)	353
HapII	CCGG	2 cut(s)	214, 949
Hin1II	CATG	3 cut(s)	642, 881, 1024
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HindIII	AAGCTT	2 cut(s)	644, 935
HinfI	GANTC	6 cut(s)	47, 65, 278, 481, 635, 815
HpaII	CCGG	2 cut(s)	214, 949
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	4 cut(s)	264, 311, 845, 946
Hpy188I	TCNGA	3 cut(s)	58, 508, 957
Hpy188III	TCNNGA	3 cut(s)	854, 878, 910
Hpy8I	GTNNAC	4 cut(s)	264, 311, 845, 946
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	211, 797
HpyCH4III	ACNGT	4 cut(s)	416, 659, 737, 1028
HpyCH4IV	ACGT	1 cut(s)	942
HpyCH4V	TGCA	6 cut(s)	264, 319, 397, 721, 833, 999
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	4 cut(s)	110, 463, 518, 1035
HpySE526I	ACGT	1 cut(s)	942
Hsp92II	CATG	3 cut(s)	642, 881, 1024
Kzo9I	GATC	4 cut(s)	119, 355, 508, 967
Lsp1109I	GCAGC	2 cut(s)	364, 755
LweI	GCATC	1 cut(s)	986
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	942
MaeIII	GTNAC	4 cut(s)	187, 920, 1070, 1084
MalI	GATC	4 cut(s)	121, 357, 510, 969
MboI	GATC	4 cut(s)	119, 355, 508, 967
MboII	GAAGA	4 cut(s)	86, 153, 200, 1112
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	8 cut(s)	128, 301, 423, 700, 777, 916, 958, 1130
MlyI	GAGTC	2 cut(s)	74, 824
MmeI	TCCRAC	2 cut(s)	909, 935
MnlI	CCTC	7 cut(s)	32, 263, 400, 749, 775, 874, 973
MseI	TTAA	7 cut(s)	327, 558, 597, 713, 774, 783, 1092
MspI	CCGG	2 cut(s)	214, 949
MspR9I	CCNGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeII	GATC	4 cut(s)	119, 355, 508, 967
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	3 cut(s)	642, 881, 1024
NlaIV	GGNNCC	1 cut(s)	1120
NmuCI	GTSAC	1 cut(s)	920
PagI	TCATGA	1 cut(s)	877
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	4 cut(s)	47, 278, 481, 635
PinAI	ACCGGT	1 cut(s)	948
PkrI	GCNGC	2 cut(s)	379, 745
Ple19I	CGATCG	1 cut(s)	358
PleI	GAGTC	2 cut(s)	73, 823
PpsI	GAGTC	2 cut(s)	73, 823
PpuMI	RGGWCCY	1 cut(s)	1118
Psp5II	RGGWCCY	1 cut(s)	1118
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	1120
PspPI	GGNCC	1 cut(s)	1118
PspPPI	RGGWCCY	1 cut(s)	1118
PvuI	CGATCG	1 cut(s)	358
RsaI	GTAC	2 cut(s)	491, 1019
RsaNI	GTAC	2 cut(s)	490, 1018
SaqAI	TTAA	7 cut(s)	327, 558, 597, 713, 774, 783, 1092
SatI	GCNGC	2 cut(s)	378, 744
Sau3AI	GATC	4 cut(s)	119, 355, 508, 967
Sau96I	GGNCC	1 cut(s)	1118
SchI	GAGTC	2 cut(s)	74, 824
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	986
SinI	GGWCC	1 cut(s)	1118
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
Sse9I	AATT	8 cut(s)	128, 301, 423, 700, 777, 916, 958, 1130
SsiI	CCGC	3 cut(s)	61, 554, 684
SspI	AATATT	1 cut(s)	695
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	4 cut(s)	416, 659, 737, 1028
TaiI	ACGT	1 cut(s)	945
TaqI	TCGA	3 cut(s)	88, 118, 818
TasI	AATT	8 cut(s)	128, 301, 423, 700, 777, 916, 958, 1130
TatI	WGTACW	2 cut(s)	489, 1017
TfiI	GAWTC	4 cut(s)	47, 278, 481, 635
Tru1I	TTAA	7 cut(s)	327, 558, 597, 713, 774, 783, 1092
Tru9I	TTAA	7 cut(s)	327, 558, 597, 713, 774, 783, 1092
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	2 cut(s)	377, 743
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	5 cut(s)	129, 153, 929, 1037, 1113
TspGWI	ACGGA	1 cut(s)	1000
VneI	GTGCAC	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	1118
XagI	CCTNNNNNAGG	1 cut(s)	279
XapI	RAATTY	3 cut(s)	700, 777, 958
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.