RLG00000012934

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005714
Physical Location & Seq
Reverse (-)
24071045 .. 24072181
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012934

Sequence Viewer

Length: 1137 bp
ATGGACTTGCCTGATGATTGTCTCTTCTTTATTTTCCACCGCCTTGATTCTTGCTCTGACCGTGAATCCTTTGGCTTGACTTGTCATCGCTGTCTTCGTATTCAAAACCTTAGCCGCCGGTCCTTGCAGTTTGAGTGTTCATTTAGGCAACTTGACAAACCCTCGTTATCACATTCCAACATTACCATTACCAGCTCCCATGTCCATAGGCTGCTTAATCGCTTTCAGCATTTGCGCTCATTGTCCCTATCTGGTTGCACACACTTACCTGATTCAAGCTTGAGCCATTTGACAAGCTATGGTTCAAAGTTGCACACACTTCACCTGGATTGCTGTTTTGGTATTACTGATCATGGGTTGTCTGTGGTAGCTACTAGTTGCCCCTCATTACAAGTCATCAGCCTTTATCGCTGCCAAATTACGGATTCTGGGCTAGAAAGTTTGTCTAATTCTTGCTTAACTTTGAAGGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGTTTAAGGGCTCTTTCACAGAGGTGTCGCCAGCTTCAGGCAGTTAGGATATCAAATTGTAAGGGTGTCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTAGCGCCAGAGGGCATTTCAGGAATCGTCAGTGGAGGTGGGATTGAATATTTGAACCTATCTGGTTTGATTTGGCGTAGTGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAGGATTCTTAACCTCCGGATGTGTAGAACCGTTGGCGATGAGTCTATTGTAGCAATCGCAGAAGGTTGTCCACTACTTGAAGAATGGAATTTAGCACTGTGTCATGAGGTCAGGATAGTTGGGTGGTCTTCTATTGGGACAAACTGCCAAAAGTTGGAAAAACTTCATGTGAATCGGTGTCGCAATCTATGTGATCATGGTTTGGAGGCATTGCGAAATGGTTGCAAGCAGCTTTCTGTTCTGTACATGAACGGTTGTGTTAAGGTTACATCTACAGCAGTAGAGATATTCAAATGTTATAGGGGTGATGTTACTGTCGAGGCAGAAGAAAAGATGTGTATAGGGCCTAGCTGGTCATTATGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

379

Amino Acids

41.57

Weight (kDa)

8.09

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 63 - 196 1.2e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 115 - 275 7.5e-10 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 265 - 355 7.1e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 922
AccIII TCCGGA 1 cut(s) 783
AciI CCGC 2 cut(s) 40, 115
AcsI RAATTY 1 cut(s) 856
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 2 cut(s) 485, 1013
AfiI CCNNNNNNNGG 3 cut(s) 421, 544, 922
AgsI TTSAA 9 cut(s) 104, 276, 306, 466, 593, 686, 694, 848, 1060
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 783
AoxI GGCC 1 cut(s) 1112
ApeKI GCWGC 3 cut(s) 211, 411, 997
ApoI RAATTY 1 cut(s) 856
Asp700I GAANNNNTTC 1 cut(s) 930
AspLEI GCGC 2 cut(s) 237, 646
AspS9I GGNCC 2 cut(s) 120, 1112
AsuHPI GGTGA 2 cut(s) 314, 1085
AsuNHI GCTAGC 1 cut(s) 640
AvaII GGWCC 1 cut(s) 120
AxyI CCTNAGG 1 cut(s) 761
BanII GRGCYC 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 86, 888
BbvI GCAGC 3 cut(s) 198, 398, 1009
BcgI CGANNNNNNTGC 2 cut(s) 972, 1006
BciT130I CCWGG 1 cut(s) 326
BclI TGATCA 2 cut(s) 349, 961
BcoDI GTCTC 1 cut(s) 26
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 4 cut(s) 375, 434, 641, 1116
BfmI CTRYAG 1 cut(s) 1041
BfoI RGCGCY 1 cut(s) 647
BisI GCNGC 4 cut(s) 115, 212, 412, 998
BlsI GCNGC 4 cut(s) 116, 213, 413, 999
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 120, 1112
BmrFI CCNGG 1 cut(s) 326
BmtI GCTAGC 1 cut(s) 644
BpiI GAAGAC 2 cut(s) 86, 888
Bpu10I CCTNAGC 2 cut(s) 110, 767
BpuEI CTTGAG 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 474
BsaWI WCCGGW 1 cut(s) 783
Bsc4I CCNNNNNNNGG 3 cut(s) 421, 544, 922
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 583, 733
Bse21I CCTNAGG 1 cut(s) 761
Bse3DI GCAATG 1 cut(s) 977
Bse8I GATNNNNATC 1 cut(s) 474
BseAI TCCGGA 1 cut(s) 783
BseBI CCWGG 1 cut(s) 326
BseGI GGATG 2 cut(s) 475, 792
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 3 cut(s) 421, 544, 922
BseMI GCAATG 1 cut(s) 977
BseNI ACTGG 2 cut(s) 583, 733
BseXI GCAGC 3 cut(s) 198, 398, 1009
BshFI GGCC 1 cut(s) 1114
BsiSI CCGG 2 cut(s) 118, 784
BslFI GGGAC 2 cut(s) 229, 919
BslI CCNNNNNNNGG 3 cut(s) 421, 544, 922
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 2 cut(s) 229, 919
BsnI GGCC 1 cut(s) 1114
Bsp1286I GDGCHC 1 cut(s) 520
Bsp13I TCCGGA 1 cut(s) 783
Bsp1407I TGTACA 1 cut(s) 1011
Bsp143I GATC 2 cut(s) 349, 961
BspACI CCGC 2 cut(s) 40, 115
BspANI GGCC 1 cut(s) 1114
BspEI TCCGGA 1 cut(s) 783
BspHI TCATGA 1 cut(s) 871
BspOI GCTAGC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 977
BsrFI RCCGGY 1 cut(s) 117
BsrGI TGTACA 1 cut(s) 1011
BsrI ACTGG 2 cut(s) 583, 733
BssAI RCCGGY 1 cut(s) 117
BssMI GATC 2 cut(s) 349, 961
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 5 cut(s) 62, 799, 867, 1022, 1084
Bst6I CTCTTC 2 cut(s) 29, 742
BstAUI TGTACA 1 cut(s) 1011
BstC8I GCNNGC 4 cut(s) 539, 638, 642, 995
BstDEI CTNAG 3 cut(s) 110, 761, 767
BstF5I GGATG 2 cut(s) 475, 792
BstH2I RGCGCY 1 cut(s) 647
BstHHI GCGC 2 cut(s) 237, 646
BstKTI GATC 2 cut(s) 352, 964
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 2 cut(s) 349, 961
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 1041
BstV1I GCAGC 3 cut(s) 198, 398, 1009
BstV2I GAAGAC 2 cut(s) 86, 888
Bsu36I CCTNAGG 1 cut(s) 761
BsuRI GGCC 1 cut(s) 1114
BtgZI GCGATG 2 cut(s) 71, 819
BtsCI GGATG 2 cut(s) 475, 792
BtsIMutI CAGTG 3 cut(s) 576, 676, 863
Cac8I GCNNGC 4 cut(s) 539, 638, 642, 995
CciI TCATGA 1 cut(s) 871
CfoI GCGC 2 cut(s) 237, 646
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 120, 1112
Csp6I GTAC 2 cut(s) 484, 1012
CviAII CATG 7 cut(s) 200, 353, 491, 872, 935, 965, 1015
CviQI GTAC 2 cut(s) 484, 1012
DdeI CTNAG 3 cut(s) 110, 761, 767
DpnI GATC 2 cut(s) 351, 963
DpnII GATC 2 cut(s) 349, 961
Eam1104I CTCTTC 2 cut(s) 29, 742
EarI CTCTTC 2 cut(s) 29, 742
Eco24I GRGCYC 1 cut(s) 520
Eco32I GATATC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 527
Eco81I CCTNAGG 1 cut(s) 761
EcoO109I RGGNCCY 1 cut(s) 1112
EcoRII CCWGG 1 cut(s) 324
EcoRV GATATC 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 520
FaeI CATG 7 cut(s) 203, 356, 494, 875, 938, 968, 1018
FaqI GGGAC 2 cut(s) 229, 919
FatI CATG 7 cut(s) 199, 352, 490, 871, 934, 964, 1014
FbaI TGATCA 2 cut(s) 349, 961
Fnu4HI GCNGC 4 cut(s) 115, 212, 412, 998
FokI GGATG 2 cut(s) 482, 799
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 4 cut(s) 115, 212, 412, 998
FspBI CTAG 4 cut(s) 375, 434, 641, 1116
GlaI GCGC 2 cut(s) 236, 645
GluI GCNGC 4 cut(s) 115, 212, 412, 998
HaeII RGCGCY 1 cut(s) 647
HaeIII GGCC 1 cut(s) 1114
HapII CCGG 2 cut(s) 118, 784
HhaI GCGC 2 cut(s) 237, 646
Hin1II CATG 7 cut(s) 203, 356, 494, 875, 938, 968, 1018
Hin6I GCGC 2 cut(s) 235, 644
HinP1I GCGC 2 cut(s) 235, 644
HindIII AAGCTT 1 cut(s) 277
HpaII CCGG 2 cut(s) 118, 784
HphI GGTGA 2 cut(s) 314, 1085
Hpy166II GTNNAC 1 cut(s) 839
Hpy188I TCNGA 2 cut(s) 58, 502
Hpy188III TCNNGA 4 cut(s) 660, 784, 872, 880
Hpy8I GTNNAC 1 cut(s) 839
HpyAV CCTTC 2 cut(s) 460, 824
HpyCH4III ACNGT 5 cut(s) 62, 799, 867, 1022, 1084
HpyCH4V TGCA 5 cut(s) 127, 258, 313, 636, 993
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpyF3I CTNAG 3 cut(s) 110, 761, 767
Hsp92II CATG 7 cut(s) 203, 356, 494, 875, 938, 968, 1018
HspAI GCGC 2 cut(s) 235, 644
Kpn2I TCCGGA 1 cut(s) 783
Ksp22I TGATCA 2 cut(s) 349, 961
Kzo9I GATC 2 cut(s) 349, 961
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 3 cut(s) 198, 398, 1009
MaeI CTAG 4 cut(s) 375, 434, 641, 1116
MaeIII GTNAC 3 cut(s) 574, 1033, 1078
MalI GATC 2 cut(s) 351, 963
MboI GATC 2 cut(s) 349, 961
MboII GAAGA 6 cut(s) 16, 86, 759, 860, 888, 1106
MfeI CAATTG 1 cut(s) 741
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 5 cut(s) 417, 448, 562, 741, 856
MlyI GAGTC 2 cut(s) 497, 818
MmeI TCCRAC 2 cut(s) 201, 903
MroI TCCGGA 1 cut(s) 783
MroXI GAANNNNTTC 1 cut(s) 930
MseI TTAA 5 cut(s) 216, 458, 512, 777, 1029
MslI CAYNNNNRTG 1 cut(s) 529
MspI CCGG 2 cut(s) 118, 784
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 741
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 408
NdeII GATC 2 cut(s) 349, 961
NheI GCTAGC 1 cut(s) 640
NlaIII CATG 7 cut(s) 203, 356, 494, 875, 938, 968, 1018
NmuCI GTSAC 1 cut(s) 574
OliI CACNNNNGTG 1 cut(s) 529
PagI TCATGA 1 cut(s) 871
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 930
PfeI GAWTC 9 cut(s) 47, 65, 272, 425, 475, 629, 663, 772, 940
PflMI CCANNNNNTGG 1 cut(s) 922
PkrI GCNGC 4 cut(s) 116, 213, 413, 999
PleI GAGTC 2 cut(s) 497, 817
PpsI GAGTC 2 cut(s) 497, 817
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspPI GGNCC 2 cut(s) 120, 1112
RsaI GTAC 2 cut(s) 485, 1013
RsaNI GTAC 2 cut(s) 484, 1012
RseI CAYNNNNRTG 1 cut(s) 529
SaqAI TTAA 5 cut(s) 216, 458, 512, 777, 1029
SatI GCNGC 4 cut(s) 115, 212, 412, 998
Sau3AI GATC 2 cut(s) 349, 961
Sau96I GGNCC 2 cut(s) 120, 1112
SchI GAGTC 2 cut(s) 497, 818
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 1041
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 5 cut(s) 417, 448, 562, 741, 856
SsiI CCGC 2 cut(s) 40, 115
SspI AATATT 1 cut(s) 689
SspMI CTAG 4 cut(s) 375, 434, 641, 1116
StyD4I CCNGG 1 cut(s) 324
TaaI ACNGT 5 cut(s) 62, 799, 867, 1022, 1084
TaqI TCGA 2 cut(s) 605, 1086
TasI AATT 5 cut(s) 417, 448, 562, 741, 856
TatI WGTACW 2 cut(s) 483, 1011
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 9 cut(s) 47, 65, 272, 425, 475, 629, 663, 772, 940
Tru1I TTAA 5 cut(s) 216, 458, 512, 777, 1029
Tru9I TTAA 5 cut(s) 216, 458, 512, 777, 1029
TscAI CASTG 3 cut(s) 583, 676, 870
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 3 cut(s) 211, 411, 997
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 3 cut(s) 129, 923, 1031
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 3 cut(s) 583, 676, 870
Van91I CCANNNNNTGG 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 856
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 4 cut(s) 375, 434, 641, 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.