Rh7CG118900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005714
Physical Location & Seq
Forward (+)
9097656 .. 9098341
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG118900.1

Sequence Viewer

Length: 603 bp
ATGTCGTTTTGGTCTCACTGGTCTTGCATGTACCCTACTAGTTGCCCTTCATTACAAGTCATCAGCCTTTATTGCTGCCAAATTACTGATTATGGGTTAGAAAGTTTGTCTAATTCTTGCTCAACTTTGAAGGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGTTTAAGGGCTCTTTCACAGAGGTGTGGCCAGCTTCAAGCAGTTAGGATATCAAATTGTAAGGGTGCCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGCTCCCAAGGGCATTTCGGGAATCATCATTGGAGGTGGGATTGAATATTTGAACCTATCTGGTTTGATTTGGCGTAGTGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAACCGTTGGCGATGAGTCTATTGTAGCAATTGCGAAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGGTCAGGATAGTTGGGTGGTCTTCTATTGGGACAAACTGCAAAAGTTGGAAAAACTTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

200

Amino Acids

21.6

Weight (kDa)

8.53

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 13 - 162 6.4e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 199
AfaI GTAC 2 cut(s) 32, 149
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 6 cut(s) 130, 209, 257, 350, 358, 512
AhlI ACTAGT 1 cut(s) 38
AleI CACNNNNGTG 1 cut(s) 193
AluBI AGCT 4 cut(s) 205, 278, 290, 304
AluI AGCT 4 cut(s) 205, 278, 290, 304
Alw26I GTCTC 1 cut(s) 18
Aor13HI TCCGGA 1 cut(s) 447
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 593
AxyI CCTNAGG 1 cut(s) 425
BalI TGGCCA 1 cut(s) 201
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 18
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 1 cut(s) 39
BfrI CTTAAG 1 cut(s) 431
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 552
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 312
BsaWI WCCGGW 1 cut(s) 447
Bse1I ACTGG 3 cut(s) 23, 247, 397
Bse21I CCTNAGG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 139, 456
BseJI GATNNNNATC 1 cut(s) 138
BseNI ACTGG 3 cut(s) 23, 247, 397
BseXI GCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 448
BslFI GGGAC 1 cut(s) 583
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 583
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 184
Bsp13I TCCGGA 1 cut(s) 447
BspANI GGCC 1 cut(s) 201
BspEI TCCGGA 1 cut(s) 447
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 18
BsrI ACTGG 3 cut(s) 23, 247, 397
BssECI CCNNGG 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 463, 531
Bst6I CTCTTC 1 cut(s) 406
BstAFI CTTAAG 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 203, 302, 306
BstDEI CTNAG 2 cut(s) 425, 523
BstF5I GGATG 2 cut(s) 139, 456
BstMAI GTCTC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 552
Bsu36I CCTNAGG 1 cut(s) 425
BsuRI GGCC 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 2 cut(s) 139, 456
BtsIMutI CAGTG 3 cut(s) 16, 240, 527
Cac8I GCNNGC 3 cut(s) 203, 302, 306
CciI TCATGA 1 cut(s) 535
Csp6I GTAC 2 cut(s) 31, 148
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 4 cut(s) 28, 155, 536, 598
CviJI RGCY 9 cut(s) 66, 182, 201, 205, 252, 278, 290, 304, 430
CviKI_1 RGCY 9 cut(s) 66, 182, 201, 205, 252, 278, 290, 304, 430
CviQI GTAC 2 cut(s) 31, 148
DdeI CTNAG 2 cut(s) 425, 523
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 18
Eco32I GATATC 1 cut(s) 222
Eco81I CCTNAGG 1 cut(s) 425
EcoRV GATATC 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 4 cut(s) 31, 158, 539, 601
FaiI YATR 6 cut(s) 29, 93, 156, 282, 537, 599
FaqI GGGAC 1 cut(s) 583
FatI CATG 4 cut(s) 27, 154, 535, 597
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 2 cut(s) 146, 463
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 1 cut(s) 39
GluI GCNGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 448
Hin1II CATG 4 cut(s) 31, 158, 539, 601
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 6 cut(s) 139, 167, 293, 327, 436, 473
HpaII CCGG 1 cut(s) 448
Hpy166II GTNNAC 1 cut(s) 503
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 4 cut(s) 324, 448, 536, 544
Hpy8I GTNNAC 1 cut(s) 503
HpyAV CCTTC 2 cut(s) 57, 124
HpyCH4III ACNGT 2 cut(s) 463, 531
HpyCH4V TGCA 3 cut(s) 27, 300, 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 2 cut(s) 425, 523
Hsp92II CATG 4 cut(s) 31, 158, 539, 601
Kpn2I TCCGGA 1 cut(s) 447
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 8 cut(s) 4, 156, 215, 228, 351, 378, 461, 529
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 1 cut(s) 39
MboII GAAGA 3 cut(s) 423, 524, 552
MfeI CAATTG 2 cut(s) 405, 486
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 5 cut(s) 81, 112, 226, 405, 486
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 2 cut(s) 161, 482
MmeI TCCRAC 1 cut(s) 566
MnlI CCTC 6 cut(s) 186, 277, 332, 407, 455, 532
Mox20I TGGCCA 1 cut(s) 201
MroI TCCGGA 1 cut(s) 447
MroXI GAANNNNTTC 1 cut(s) 593
MscI TGGCCA 1 cut(s) 201
MseI TTAA 3 cut(s) 176, 432, 441
MslI CAYNNNNRTG 1 cut(s) 193
Msp20I TGGCCA 1 cut(s) 201
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 1 cut(s) 448
MunI CAATTG 2 cut(s) 405, 486
MwoI GCNNNNNNNGC 1 cut(s) 72
NlaIII CATG 4 cut(s) 31, 158, 539, 601
NlaIV GGNNCC 1 cut(s) 238
NspI RCATGY 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 193
PagI TCATGA 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 593
PfeI GAWTC 4 cut(s) 139, 293, 327, 436
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 2 cut(s) 161, 481
PpsI GAGTC 2 cut(s) 161, 481
PspN4I GGNNCC 1 cut(s) 238
RsaI GTAC 2 cut(s) 32, 149
RsaNI GTAC 2 cut(s) 31, 148
RseI CAYNNNNRTG 1 cut(s) 193
SaqAI TTAA 3 cut(s) 176, 432, 441
SatI GCNGC 1 cut(s) 76
SchI GAGTC 2 cut(s) 161, 482
SduI GDGCHC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 5 cut(s) 81, 112, 226, 405, 486
SspI AATATT 1 cut(s) 353
SspMI CTAG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 463, 531
TaqI TCGA 1 cut(s) 269
TasI AATT 5 cut(s) 81, 112, 226, 405, 486
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 4 cut(s) 139, 293, 327, 436
Tru1I TTAA 3 cut(s) 176, 432, 441
Tru9I TTAA 3 cut(s) 176, 432, 441
TscAI CASTG 3 cut(s) 23, 247, 534
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 2 cut(s) 39, 586
TspRI CASTG 3 cut(s) 23, 247, 534
Vha464I CTTAAG 1 cut(s) 431
XceI RCATGY 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.