Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005714

Physical Location & Seq

Genomic Coordinates Forward (+)

67086176 .. 67095103

Gene Structure 8928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG497900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAGCCCCAAGGTGCTGAGAATGTGCAGCCCCAAGCTACTAACCCTATCCAGCCACAATCTCCTCACCTAGTGCAGCCCCAAGCTGCTGATCCTGTGCAGCCCCAAGCTCCTAACCCAATGCAGCACCAAGAAGAAAATGAAGAAGGCCCTGAAGATGATCATGTAGCTACCCAACAATCACAGGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGTTTAAGAGCTCTTTCACAGAGGTGTCGCCAGCTTCAGGTAGTTAGGATATCAAATTGTAAGGGTGCCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGCGCCAGAGGGTATTTCGGGAATTGTCAGTGGAGGTGGGATTGAATATTTGAACCTATCTGGTTTGATTTGGCGTAGTGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTGAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAATCGTTGGCGATGAGTCTATTGTAGCAATTGCGGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGGTCAAGATAGTTGGGTGGTCTTCTATTGGGACAAACTGCAAAAGTTGGAAAAAGTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

218

Amino Acids

23.49

Weight (kDa)

5.37

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07550 AT3G07550 AT3G07550
fragaria_vesca	FvH4_2g17281
malus_domestica	MD05G1151800.v1.1 MD10G1146000.v1.1
prunus_persica	Prupe.8G184400_v2.0.a1
pyrus_communis	pycom05g14620
rosa_chinensis	RchiOBHm_Chr5g0064201 RchiOBHm_Chr6g0281791 RchiOBHm_Chr7g0205731
rosa_laevigata	RLG00000008497 RLG00000012934
rosa_multiflora	Rmu_sc0002083.1_g000004 Rmu_ssc0000126.1_g000045
rosa_roxburghii	Rroxscaffold_1G00055070 Rroxscaffold_7G00186800
rosa_rugosa	Rorug04G0090400
rosa_samantha	Rh6AG256500 Rh6BG259500 Rh6CG258400 Rh6DG250500 Rh7AG309600 Rh7CG118900 Rh7CG328800 Rh7CG497900 Rh7DG466000
rosa_wichuraiana	Rw6G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	501
AciI	CCGC	1 cut(s)	545
AclWI	GGATC	1 cut(s)	86
AcuI	CTGAAG	2 cut(s)	174, 245
AdeI	CACNNNGTG	1 cut(s)	73
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	311, 404, 412, 566
AleI	CACNNNNGTG	1 cut(s)	247
AluBI	AGCT	9 cut(s)	38, 86, 110, 170, 236, 259, 332, 344, 358
AluI	AGCT	9 cut(s)	38, 86, 110, 170, 236, 259, 332, 344, 358
Alw21I	GWGCWC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	501
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	5 cut(s)	28, 76, 86, 100, 124
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	9, 238
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	5 cut(s)	40, 73, 88, 112, 136
BclI	TGATCA	1 cut(s)	160
BfaI	CTAG	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	485
BisI	GCNGC	5 cut(s)	29, 77, 87, 101, 125
BlsI	GCNGC	5 cut(s)	30, 78, 88, 102, 126
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	6, 292
BpiI	GAAGAC	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	301, 451
Bse21I	CCTNAGG	1 cut(s)	479
Bse8I	GATNNNNATC	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	2 cut(s)	193, 510
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	9, 470
BseNI	ACTGG	2 cut(s)	301, 451
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	5 cut(s)	40, 73, 88, 112, 136
BsgI	GTGCAG	3 cut(s)	47, 95, 119
BshFI	GGCC	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	637
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	9, 238
Bsp13I	TCCGGA	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	91, 160
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	10, 471
BspEI	TCCGGA	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	6, 292
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	485
BsrI	ACTGG	2 cut(s)	301, 451
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	91, 160
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	585
Bst6I	CTCTTC	1 cut(s)	460
BstAFI	CTTAAG	1 cut(s)	485
BstC8I	GCNNGC	3 cut(s)	257, 356, 360
BstDEI	CTNAG	3 cut(s)	18, 479, 577
BstF5I	GGATG	2 cut(s)	193, 510
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	2 cut(s)	94, 163
BstMBI	GATC	2 cut(s)	91, 160
BstV1I	GCAGC	5 cut(s)	40, 73, 88, 112, 136
BstV2I	GAAGAC	1 cut(s)	606
Bsu36I	CCTNAGG	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	193, 510
BtsIMutI	CAGTG	3 cut(s)	294, 394, 581
Cac8I	GCNNGC	3 cut(s)	257, 356, 360
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	202
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	4 cut(s)	164, 209, 590, 652
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	18, 479, 577
DpnI	GATC	2 cut(s)	93, 162
DpnII	GATC	2 cut(s)	91, 160
DraIII	CACNNNGTG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	2 cut(s)	9, 238
Eco32I	GATATC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	174, 245
Eco81I	CCTNAGG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	2 cut(s)	9, 238
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	4 cut(s)	167, 212, 593, 655
FaiI	YATR	5 cut(s)	165, 210, 336, 591, 653
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	4 cut(s)	163, 208, 589, 651
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	5 cut(s)	29, 77, 87, 101, 125
FokI	GGATG	2 cut(s)	200, 517
FriOI	GRGCYC	2 cut(s)	9, 238
Fsp4HI	GCNGC	5 cut(s)	29, 77, 87, 101, 125
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	5 cut(s)	29, 77, 87, 101, 125
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	502
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	4 cut(s)	167, 212, 593, 655
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	6 cut(s)	193, 221, 347, 490, 513, 527
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	4 cut(s)	378, 502, 590, 598
Hpy8I	GTNNAC	1 cut(s)	557
HpyAV	CCTTC	2 cut(s)	140, 542
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4V	TGCA	6 cut(s)	28, 76, 100, 124, 354, 633
HpyF3I	CTNAG	3 cut(s)	18, 479, 577
Hsp92II	CATG	4 cut(s)	167, 212, 593, 655
HspAI	GCGC	1 cut(s)	362
Kpn2I	TCCGGA	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	91, 160
LmnI	GCTCC	2 cut(s)	4, 115
Lsp1109I	GCAGC	5 cut(s)	40, 73, 88, 112, 136
MaeI	CTAG	1 cut(s)	71
MalI	GATC	2 cut(s)	93, 162
MboI	GATC	2 cut(s)	91, 160
MboII	GAAGA	6 cut(s)	146, 155, 167, 477, 578, 606
MfeI	CAATTG	2 cut(s)	459, 540
MhlI	GDGCHC	2 cut(s)	9, 238
MluCI	AATT	4 cut(s)	280, 381, 459, 540
MlyI	GAGTC	2 cut(s)	215, 536
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	9 cut(s)	75, 240, 331, 361, 386, 461, 474, 509, 586
MroI	TCCGGA	1 cut(s)	501
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	3 cut(s)	230, 486, 495
MslI	CAYNNNNRTG	1 cut(s)	247
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	1 cut(s)	502
MunI	CAATTG	2 cut(s)	459, 540
NdeII	GATC	2 cut(s)	91, 160
NlaIII	CATG	4 cut(s)	167, 212, 593, 655
NlaIV	GGNNCC	2 cut(s)	6, 292
OliI	CACNNNNGTG	1 cut(s)	247
PagI	TCATGA	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	4 cut(s)	193, 347, 490, 513
PkrI	GCNGC	5 cut(s)	30, 78, 88, 102, 126
PleI	GAGTC	2 cut(s)	215, 535
PpsI	GAGTC	2 cut(s)	215, 535
Psp124BI	GAGCTC	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	6, 292
PspPI	GGNCC	1 cut(s)	149
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	230, 486, 495
SatI	GCNGC	5 cut(s)	29, 77, 87, 101, 125
Sau3AI	GATC	2 cut(s)	91, 160
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	2 cut(s)	215, 536
SduI	GDGCHC	2 cut(s)	9, 238
SmiMI	CAYNNNNRTG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	4 cut(s)	280, 381, 459, 540
SsiI	CCGC	1 cut(s)	545
SspI	AATATT	1 cut(s)	407
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	585
TaqI	TCGA	1 cut(s)	323
TasI	AATT	4 cut(s)	280, 381, 459, 540
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	4 cut(s)	193, 347, 490, 513
Tru1I	TTAA	3 cut(s)	230, 486, 495
Tru9I	TTAA	3 cut(s)	230, 486, 495
TscAI	CASTG	3 cut(s)	301, 394, 588
TseI	GCWGC	5 cut(s)	28, 76, 86, 100, 124
TspDTI	ATGAA	2 cut(s)	156, 640
TspRI	CASTG	3 cut(s)	301, 394, 588
Vha464I	CTTAAG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.