Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005714

Physical Location & Seq

Genomic Coordinates Forward (+)

18192168 .. 18193352

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAAACCTACTTGTACTTCTAGTACTTATTCTCTTACCACCATCATGGACTTGCCTGATGATTGCCTCGTCTTTATTTTCCAATGCCTTGATTCTGGCTCTGACCGTGAGTCCTTTGGCTTGACTTGTCATCGATGTCTTCGCATTCAAAATCTTAGTCGTCGATCGTTACAATTTCAATGTTCATTCAAACAACTTGACATTTCTTCATTATCACATTCAAATACCAATGTTACCATTAGAACCTTCCATCTTCACCGGCTTCTTACCCGTTTTCAACATTTACACTCATTGTCCCTCTCTGGGTGCACAGAGCTACCTGATTCAGGCTTGTCCCACTTGGTAAATTATGGTTCACATTTGCACACCCTTAACCTGGAGTGTTGTTTAGGTATTACTGATCATGGATTGTCTATGGTAGCTGCTGGTTGCCCCTCGTTGCAAGTTATCAGCCTTTACCGTTGCCAAATTACTGATTTGGGGTTAGAAAAGTTGGCTAGTTCTTGCTCAGTTCTAAAGGATGTGAATCTCTTGTACTGCTATTTTATTTCTGATCGTGGGCTAAGAGCTATTTCACAAGGCTGTCATCAACTTCAAGCGGTTAAGATATCACATTGTAAGGGCATAACTGGTGTTGGCTTTAATGGTTGCTCATCAACTTTAGCTTATGTAGAAGCTGAATCGTGTAAGCTTGAGCCAGAAGGTATTTTGGGAATTTTAAGTGGGGGTGGGATTGAATATTTGAATATATCTGGTTTAATCTTGCAAAATGGTAGAAATGGTTTGGCAGCGATTGGGAGAGGATATGCCTCCCGTCTTAAAATTCTTAACCTTCGCCTTTGTAGAACTATTGGCGATGAGTCGATTGTAGCAGTTGCAGAATGTTGTCCACTACTTCAAGAATGGAACTTGGCATTGTGTCATGAGGTCAAAATAGTGGGATGGTCTTCTATCGGGATGAATTGTCACAAGTTGGAGAAGCTTCACGTCAACCGGTGTCGGAATTTATGTGATAGGGGTTTAGAGGCTTTGCGAAATGGATGCAAACAACTATCCGTTTTGTACATGAACGGTTGTCCTAAGATTACTTCAACAGCAATAGAGTTGTTCAAATGTTACAGGAGTGATGTTACCATTAAGAATGAAGAGAAAATGTGTATAGGTCCCATCTGGGAATTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

395

Amino Acids

43.52

Weight (kDa)

8.19

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	88 - 215	1.4e-08	Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885	PF25372	139 - 291	5.4e-07	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07550 AT3G07550 AT3G07550
fragaria_vesca	FvH4_2g17281
malus_domestica	MD05G1151800.v1.1 MD10G1146000.v1.1
prunus_persica	Prupe.8G184400_v2.0.a1
pyrus_communis	pycom05g14620
rosa_chinensis	RchiOBHm_Chr5g0064201 RchiOBHm_Chr6g0281791 RchiOBHm_Chr7g0205731
rosa_laevigata	RLG00000008497 RLG00000012934
rosa_multiflora	Rmu_sc0002083.1_g000004 Rmu_ssc0000126.1_g000045
rosa_roxburghii	Rroxscaffold_1G00055070 Rroxscaffold_7G00186800
rosa_rugosa	Rorug04G0090400
rosa_samantha	Rh6AG256500 Rh6BG259500 Rh6CG258400 Rh6DG250500 Rh7AG309600 Rh7CG118900 Rh7CG328800 Rh7CG497900 Rh7DG466000
rosa_wichuraiana	Rw6G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	599
AcsI	RAATTY	3 cut(s)	714, 822, 1003
AfaI	GTAC	4 cut(s)	16, 25, 536, 1064
AfiI	CCNNNNNNNGG	3 cut(s)	303, 326, 376
AgeI	ACCGGT	1 cut(s)	993
AhdI	GACNNNNNGTC	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	988
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	7 cut(s)	316, 422, 569, 665, 677, 691, 982
AluI	AGCT	7 cut(s)	316, 422, 569, 665, 677, 691, 982
Alw21I	GWGCWC	1 cut(s)	311
Alw44I	GTGCAC	1 cut(s)	307
ApaLI	GTGCAC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	422, 788
ApoI	RAATTY	3 cut(s)	714, 822, 1003
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AsiGI	ACCGGT	1 cut(s)	993
AspS9I	GGNCC	1 cut(s)	1163
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	1163
BaeGI	GKGCMC	1 cut(s)	311
BbsI	GAAGAC	2 cut(s)	131, 939
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	409, 800
BccI	CCATC	4 cut(s)	50, 258, 936, 1175
BcgI	CGANNNNNNTGC	2 cut(s)	1023, 1057
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	400
BfaI	CTAG	2 cut(s)	21, 498
BisI	GCNGC	2 cut(s)	423, 789
BlsI	GCNGC	2 cut(s)	424, 790
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	1163
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	988
BmgT120I	GGNCC	1 cut(s)	1163
BmiI	GGNNCC	1 cut(s)	1165
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	1031
BpiI	GAAGAC	2 cut(s)	131, 939
BpmI	CTGGAG	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	713
Bsa29I	ATCGAT	1 cut(s)	133
BsaBI	GATNNNNATC	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	993
Bsc4I	CCNNNNNNNGG	3 cut(s)	303, 326, 376
Bse118I	RCCGGY	2 cut(s)	258, 993
Bse1I	ACTGG	1 cut(s)	634
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	377
BseCI	ATCGAT	1 cut(s)	133
BseGI	GGATG	4 cut(s)	526, 947, 963, 1046
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	3 cut(s)	303, 326, 376
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	634
BseSI	GKGCMC	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	409, 800
Bsh1285I	CGRYCG	1 cut(s)	167
BshTI	ACCGGT	1 cut(s)	993
BshVI	ATCGAT	1 cut(s)	133
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	259, 994
BslFI	GGGAC	3 cut(s)	280, 319, 1149
BslI	CCNNNNNNNGG	3 cut(s)	303, 326, 376
BsmFI	GGGAC	3 cut(s)	280, 319, 1149
BsmI	GAATGC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp1407I	TGTACA	1 cut(s)	1062
Bsp143I	GATC	3 cut(s)	164, 400, 553
BspACI	CCGC	1 cut(s)	599
BspCNI	CTCAG	1 cut(s)	521
BspDI	ATCGAT	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	922
BspLI	GGNNCC	1 cut(s)	1165
BsrFI	RCCGGY	2 cut(s)	258, 993
BsrGI	TGTACA	1 cut(s)	1062
BsrI	ACTGG	1 cut(s)	634
BssAI	RCCGGY	2 cut(s)	258, 993
BssMI	GATC	3 cut(s)	164, 400, 553
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	107, 461, 1073
Bst6I	CTCTTC	1 cut(s)	1140
BstAUI	TGTACA	1 cut(s)	1062
BstDEI	CTNAG	4 cut(s)	155, 508, 563, 1080
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	4 cut(s)	526, 947, 963, 1046
BstKTI	GATC	3 cut(s)	167, 403, 556
BstMBI	GATC	3 cut(s)	164, 400, 553
BstMCI	CGRYCG	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	409, 800
BstV2I	GAAGAC	2 cut(s)	131, 939
BstXI	CCANNNNNNTGG	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	133
BsuTUI	ATCGAT	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	870
BtrI	CACGTC	1 cut(s)	988
BtsCI	GGATG	4 cut(s)	526, 947, 963, 1046
CciI	TCATGA	1 cut(s)	922
Cfr10I	RCCGGY	2 cut(s)	258, 993
Cfr13I	GGNCC	1 cut(s)	1163
ClaI	ATCGAT	1 cut(s)	133
Csp6I	GTAC	4 cut(s)	15, 24, 535, 1063
CspAI	ACCGGT	1 cut(s)	993
CviAII	CATG	4 cut(s)	46, 404, 923, 1066
CviQI	GTAC	4 cut(s)	15, 24, 535, 1063
DdeI	CTNAG	4 cut(s)	155, 508, 563, 1080
DpnI	GATC	3 cut(s)	166, 402, 555
DpnII	GATC	3 cut(s)	164, 400, 553
DriI	GACNNNNNGTC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	1140
Eam1105I	GACNNNNNGTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	1140
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	1163
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	1163
EcoRII	CCWGG	1 cut(s)	375
EcoRV	GATATC	1 cut(s)	609
FaeI	CATG	4 cut(s)	49, 407, 926, 1069
FaqI	GGGAC	3 cut(s)	280, 319, 1149
FatI	CATG	4 cut(s)	45, 403, 922, 1065
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	423, 789
FokI	GGATG	4 cut(s)	533, 954, 970, 1053
Fsp4HI	GCNGC	2 cut(s)	423, 789
FspBI	CTAG	2 cut(s)	21, 498
GluI	GCNGC	2 cut(s)	423, 789
GsuI	CTGGAG	1 cut(s)	398
HapII	CCGG	2 cut(s)	259, 994
Hin1II	CATG	4 cut(s)	49, 407, 926, 1069
HincII	GTYRAC	1 cut(s)	991
HindII	GTYRAC	1 cut(s)	991
HindIII	AAGCTT	2 cut(s)	689, 980
HinfI	GANTC	6 cut(s)	92, 110, 323, 526, 680, 860
HpaII	CCGG	2 cut(s)	259, 994
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	4 cut(s)	309, 356, 890, 991
Hpy188I	TCNGA	3 cut(s)	103, 553, 1002
Hpy188III	TCNNGA	3 cut(s)	899, 923, 955
Hpy8I	GTNNAC	4 cut(s)	309, 356, 890, 991
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	256, 695, 842
HpyCH4III	ACNGT	3 cut(s)	107, 461, 1073
HpyCH4IV	ACGT	1 cut(s)	987
HpyCH4V	TGCA	6 cut(s)	309, 364, 442, 766, 878, 1044
HpyF3I	CTNAG	4 cut(s)	155, 508, 563, 1080
HpySE526I	ACGT	1 cut(s)	987
Hsp92II	CATG	4 cut(s)	49, 407, 926, 1069
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	164, 400, 553
Lsp1109I	GCAGC	2 cut(s)	409, 800
LweI	GCATC	1 cut(s)	1031
MaeI	CTAG	2 cut(s)	21, 498
MaeII	ACGT	1 cut(s)	987
MaeIII	GTNAC	5 cut(s)	168, 232, 965, 1115, 1129
MalI	GATC	3 cut(s)	166, 402, 555
MboI	GATC	3 cut(s)	164, 400, 553
MboII	GAAGA	5 cut(s)	131, 198, 245, 939, 1157
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	8 cut(s)	173, 346, 468, 714, 822, 961, 1003, 1175
MlyI	GAGTC	2 cut(s)	119, 869
MmeI	TCCRAC	2 cut(s)	954, 980
MnlI	CCTC	7 cut(s)	77, 308, 445, 794, 820, 919, 1018
MseI	TTAA	8 cut(s)	372, 603, 642, 719, 758, 819, 828, 1137
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	2 cut(s)	259, 994
MspR9I	CCNGG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	377
NdeII	GATC	3 cut(s)	164, 400, 553
NlaIII	CATG	4 cut(s)	49, 407, 926, 1069
NlaIV	GGNNCC	1 cut(s)	1165
NmuCI	GTSAC	1 cut(s)	965
PagI	TCATGA	1 cut(s)	922
PctI	GAATGC	1 cut(s)	144
PfeI	GAWTC	4 cut(s)	92, 323, 526, 680
PinAI	ACCGGT	1 cut(s)	993
PkrI	GCNGC	2 cut(s)	424, 790
Ple19I	CGATCG	1 cut(s)	167
PleI	GAGTC	2 cut(s)	118, 868
PpsI	GAGTC	2 cut(s)	118, 868
PpuMI	RGGWCCY	1 cut(s)	1163
Psp5II	RGGWCCY	1 cut(s)	1163
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	1165
PspPI	GGNCC	1 cut(s)	1163
PspPPI	RGGWCCY	1 cut(s)	1163
PvuI	CGATCG	1 cut(s)	167
RsaI	GTAC	4 cut(s)	16, 25, 536, 1064
RsaNI	GTAC	4 cut(s)	15, 24, 535, 1063
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	8 cut(s)	372, 603, 642, 719, 758, 819, 828, 1137
SatI	GCNGC	2 cut(s)	423, 789
Sau3AI	GATC	3 cut(s)	164, 400, 553
Sau96I	GGNCC	1 cut(s)	1163
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	2 cut(s)	119, 869
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	311
SfaNI	GCATC	1 cut(s)	1031
SinI	GGWCC	1 cut(s)	1163
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	8 cut(s)	173, 346, 468, 714, 822, 961, 1003, 1175
SsiI	CCGC	1 cut(s)	599
SspI	AATATT	1 cut(s)	740
SspMI	CTAG	2 cut(s)	21, 498
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	107, 461, 1073
TaiI	ACGT	1 cut(s)	990
TaqI	TCGA	3 cut(s)	133, 163, 863
TasI	AATT	8 cut(s)	173, 346, 468, 714, 822, 961, 1003, 1175
TatI	WGTACW	4 cut(s)	14, 23, 534, 1062
TfiI	GAWTC	4 cut(s)	92, 323, 526, 680
Tru1I	TTAA	8 cut(s)	372, 603, 642, 719, 758, 819, 828, 1137
Tru9I	TTAA	8 cut(s)	372, 603, 642, 719, 758, 819, 828, 1137
TseFI	GTSAC	1 cut(s)	965
TseI	GCWGC	2 cut(s)	422, 788
Tsp45I	GTSAC	1 cut(s)	965
TspDTI	ATGAA	6 cut(s)	17, 174, 198, 974, 1082, 1158
TspGWI	ACGGA	1 cut(s)	1045
VneI	GTGCAC	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	1163
XagI	CCTNNNNNAGG	1 cut(s)	324
XapI	RAATTY	3 cut(s)	714, 822, 1003
XspI	CTAG	2 cut(s)	21, 498
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.