Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002083.1

Orthogroup ID

OG0005714

Physical Location & Seq

Genomic Coordinates Reverse (-)

15893 .. 20615

Gene Structure 4723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002083.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgaagggcaaaatggggcatttggtggcaaaatatctgatttttttgcctaggtgcagagcaagtttgtctaattcttgctcaactttgaaggatgtgaatctcttgtactgccatgctatttctgactttggtttaagggctctttcacagaggtgttgccagcttcaggcagttaggatatcaaattgtaagggtgccactggtattggctctcaaggttgttcctcgactttagcttatgtagaagctgaatcttgcaagcttgcgccagagggcatttcgggaatcgtcagtggaggtgggattggatatttgaacctatctggtttgatttggcgtagtggtggaactggtttgggaataattggaagagggttcgcccttaggcttaagattcttaacctccggatgtgtagaaccgttggcgatgagtctattgtagcaattgcggaaggttgtccactacttgaagactggaacttagcactgtgtcaagataacgaagaccctcctcctccgagccttccaccattgaaagccccaaattacagtcctcctcctcctcctccatacttgacatccagcagacgggatcaggagggtgggagggggggaatggatttgtcacctggtggagggggggaatggaggttttgtaccagatccatcttcttctgtttcggatcagggggtcccccccgagtttggtgcggtaaagccacggatctgaaggtggcggtctcgatgaagtctatggtatgggctgatgtggtagcctcgatctgctgctcgttgcaaggtggccgaggttctgacagaatgacgactgttcggatggaagcagctggtgaagcagtcctaggccacgaactgtgcctgggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

295

Amino Acids

31.16

Weight (kDa)

8.65

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07550 AT3G07550 AT3G07550
fragaria_vesca	FvH4_2g17281
malus_domestica	MD05G1151800.v1.1 MD10G1146000.v1.1
prunus_persica	Prupe.8G184400_v2.0.a1
pyrus_communis	pycom05g14620
rosa_chinensis	RchiOBHm_Chr5g0064201 RchiOBHm_Chr6g0281791 RchiOBHm_Chr7g0205731
rosa_laevigata	RLG00000008497 RLG00000012934
rosa_multiflora	Rmu_sc0002083.1_g000004 Rmu_ssc0000126.1_g000045
rosa_roxburghii	Rroxscaffold_1G00055070 Rroxscaffold_7G00186800
rosa_rugosa	Rorug04G0090400
rosa_samantha	Rh6AG256500 Rh6BG259500 Rh6CG258400 Rh6DG250500 Rh7AG309600 Rh7CG118900 Rh7CG328800 Rh7CG497900 Rh7DG466000
rosa_wichuraiana	Rw6G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccIII	TCCGGA	1 cut(s)	408
AciI	CCGC	3 cut(s)	452, 714, 740
AclWI	GGATC	4 cut(s)	603, 660, 694, 735
AcoI	YGGCCR	1 cut(s)	805
AcuI	CTGAAG	2 cut(s)	152, 752
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	110, 661
AfiI	CCNNNNNNNGG	4 cut(s)	169, 591, 638, 708
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	4 cut(s)	91, 319, 473, 538
AjnI	CCWGG	2 cut(s)	631, 879
AleI	CACNNNNGTG	1 cut(s)	154
AluBI	AGCT	5 cut(s)	166, 239, 251, 265, 848
AluI	AGCT	5 cut(s)	166, 239, 251, 265, 848
Alw26I	GTCTC	1 cut(s)	748
AlwI	GGATC	4 cut(s)	603, 660, 694, 735
Ama87I	CYCGRG	1 cut(s)	702
Aor13HI	TCCGGA	1 cut(s)	408
AoxI	GGCC	2 cut(s)	805, 865
ApeKI	GCWGC	2 cut(s)	789, 845
AspA2I	CCTAGG	2 cut(s)	50, 862
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	2 cut(s)	621, 863
AvaI	CYCGRG	1 cut(s)	702
AvaII	GGWCC	1 cut(s)	695
AvrII	CCTAGG	2 cut(s)	50, 862
AxyI	CCTNAGG	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	145
BbsI	GAAGAC	2 cut(s)	480, 513
BbvI	GCAGC	2 cut(s)	776, 857
BccI	CCATC	2 cut(s)	677, 832
BcgI	CGANNNNNNTGC	2 cut(s)	693, 727
BciT130I	CCWGG	2 cut(s)	633, 881
BcoDI	GTCTC	1 cut(s)	748
BfaI	CTAG	3 cut(s)	51, 863, 886
BfrI	CTTAAG	1 cut(s)	392
BisI	GCNGC	2 cut(s)	790, 846
BlnI	CCTAGG	2 cut(s)	50, 862
BlsI	GCNGC	2 cut(s)	791, 847
Bme1390I	CCNGG	2 cut(s)	633, 881
Bme18I	GGWCC	1 cut(s)	695
BmeT110I	CYCGRG	1 cut(s)	702
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	3 cut(s)	199, 696, 697
BmrFI	CCNGG	2 cut(s)	633, 881
BpiI	GAAGAC	2 cut(s)	480, 513
BpuEI	CTTGAG	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	748
BsaJI	CCNNGG	5 cut(s)	50, 723, 808, 862, 880
BsaWI	WCCGGW	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	643, 673
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 591, 638, 708
Bse1I	ACTGG	3 cut(s)	208, 358, 482
Bse21I	CCTNAGG	1 cut(s)	386
Bse8I	GATNNNNATC	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	633, 881
BseDI	CCNNGG	5 cut(s)	50, 723, 808, 862, 880
BseGI	GGATG	4 cut(s)	100, 417, 581, 843
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	4 cut(s)	169, 591, 638, 708
BseNI	ACTGG	3 cut(s)	208, 358, 482
BseRI	GAGGAG	6 cut(s)	504, 507, 549, 552, 555, 558
BseXI	GCAGC	2 cut(s)	776, 857
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	807, 867
BshNI	GGYRCC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	702
BsiSI	CCGG	1 cut(s)	409
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	4 cut(s)	169, 591, 638, 708
BsmAI	GTCTC	1 cut(s)	748
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	807, 867
Bso31I	GGTCTC	1 cut(s)	748
BsoBI	CYCGRG	1 cut(s)	702
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp13I	TCCGGA	1 cut(s)	408
Bsp143I	GATC	5 cut(s)	595, 665, 686, 727, 783
BspACI	CCGC	3 cut(s)	452, 714, 740
BspANI	GGCC	2 cut(s)	807, 867
BspEI	TCCGGA	1 cut(s)	408
BspLI	GGNNCC	3 cut(s)	199, 696, 697
BspPI	GGATC	4 cut(s)	603, 660, 694, 735
BspT107I	GGYRCC	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	748
BsrI	ACTGG	3 cut(s)	208, 358, 482
BssECI	CCNNGG	5 cut(s)	50, 723, 808, 862, 880
BssMI	GATC	5 cut(s)	595, 665, 686, 727, 783
BssT1I	CCWWGG	2 cut(s)	50, 862
Bst2UI	CCWGG	2 cut(s)	633, 881
Bst4CI	ACNGT	5 cut(s)	424, 492, 554, 832, 876
Bst6I	CTCTTC	1 cut(s)	367
BstAFI	CTTAAG	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	164, 263, 267
BstDEI	CTNAG	2 cut(s)	386, 484
BstDSI	CCRYGG	1 cut(s)	723
BstENI	CCTNNNNNAGG	1 cut(s)	636
BstF5I	GGATG	4 cut(s)	100, 417, 581, 843
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	5 cut(s)	598, 668, 689, 730, 786
BstMAI	GTCTC	1 cut(s)	748
BstMBI	GATC	5 cut(s)	595, 665, 686, 727, 783
BstMWI	GCNNNNNNNGC	1 cut(s)	854
BstNI	CCWGG	2 cut(s)	633, 881
BstSCI	CCNGG	2 cut(s)	631, 879
BstV1I	GCAGC	2 cut(s)	776, 857
BstV2I	GAAGAC	2 cut(s)	480, 513
BstX2I	RGATCY	2 cut(s)	665, 727
BstYI	RGATCY	2 cut(s)	665, 727
Bsu36I	CCTNAGG	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	807, 867
BtgI	CCRYGG	1 cut(s)	723
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	4 cut(s)	100, 417, 581, 843
BtsIMutI	CAGTG	3 cut(s)	201, 301, 488
Cac8I	GCNNGC	3 cut(s)	164, 263, 267
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	695
CsiI	ACCWGGT	1 cut(s)	631
Csp6I	GTAC	2 cut(s)	109, 660
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	1 cut(s)	116
CviQI	GTAC	2 cut(s)	109, 660
DdeI	CTNAG	2 cut(s)	386, 484
DpnI	GATC	5 cut(s)	597, 667, 688, 729, 785
DpnII	GATC	5 cut(s)	595, 665, 686, 727, 783
DraIII	CACNNNGTG	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	50, 862
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	748
Eco32I	GATATC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	695
Eco57I	CTGAAG	2 cut(s)	152, 752
Eco81I	CCTNAGG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	702
EcoNI	CCTNNNNNAGG	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRII	CCWGG	2 cut(s)	631, 879
EcoRV	GATATC	1 cut(s)	183
EcoT14I	CCWWGG	2 cut(s)	50, 862
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	50, 862
FaeI	CATG	1 cut(s)	119
FaiI	YATR	5 cut(s)	117, 243, 574, 758, 763
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	790, 846
FokI	GGATG	4 cut(s)	107, 424, 568, 850
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	790, 846
FspBI	CTAG	3 cut(s)	51, 863, 886
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	2 cut(s)	790, 846
HaeIII	GGCC	2 cut(s)	807, 867
HapII	CCGG	1 cut(s)	409
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	5 cut(s)	100, 254, 288, 397, 434
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	2 cut(s)	621, 863
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	7 cut(s)	39, 127, 522, 686, 732, 817, 837
Hpy188III	TCNNGA	5 cut(s)	285, 409, 497, 599, 745
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	4 cut(s)	85, 449, 536, 727
HpyCH4III	ACNGT	5 cut(s)	424, 492, 554, 832, 876
HpyCH4V	TGCA	3 cut(s)	57, 261, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	854
HpyF3I	CTNAG	2 cut(s)	386, 484
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	1 cut(s)	269
KflI	GGGWCCC	1 cut(s)	695
Kpn2I	TCCGGA	1 cut(s)	408
Kzo9I	GATC	5 cut(s)	595, 665, 686, 727, 783
Lsp1109I	GCAGC	2 cut(s)	776, 857
MabI	ACCWGGT	1 cut(s)	631
MaeI	CTAG	3 cut(s)	51, 863, 886
MaeIII	GTNAC	1 cut(s)	627
MalI	GATC	5 cut(s)	597, 667, 688, 729, 785
MboI	GATC	5 cut(s)	595, 665, 686, 727, 783
MboII	GAAGA	5 cut(s)	384, 485, 518, 664, 667
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	2 cut(s)	665, 727
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	5 cut(s)	73, 187, 366, 447, 547
MlyI	GAGTC	1 cut(s)	443
MroI	TCCGGA	1 cut(s)	408
MseI	TTAA	3 cut(s)	137, 393, 402
MslI	CAYNNNNRTG	1 cut(s)	154
MspA1I	CMGCKG	1 cut(s)	848
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	2 cut(s)	633, 881
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	633, 881
MwoI	GCNNNNNNNGC	1 cut(s)	854
NdeII	GATC	5 cut(s)	595, 665, 686, 727, 783
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	3 cut(s)	199, 696, 697
NmeAIII	GCCGAG	1 cut(s)	833
NmuCI	GTSAC	1 cut(s)	627
OliI	CACNNNNGTG	1 cut(s)	154
PfeI	GAWTC	4 cut(s)	100, 254, 288, 397
PkrI	GCNGC	2 cut(s)	791, 847
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PpuMI	RGGWCCY	1 cut(s)	695
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	2 cut(s)	631, 879
PspGI	CCWGG	2 cut(s)	631, 879
PspN4I	GGNNCC	3 cut(s)	199, 696, 697
PspPI	GGNCC	1 cut(s)	695
PspPPI	RGGWCCY	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	665, 727
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	2 cut(s)	110, 661
RsaNI	GTAC	2 cut(s)	109, 660
RseI	CAYNNNNRTG	1 cut(s)	154
SaqAI	TTAA	3 cut(s)	137, 393, 402
SatI	GCNGC	2 cut(s)	790, 846
Sau3AI	GATC	5 cut(s)	595, 665, 686, 727, 783
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	2 cut(s)	633, 881
SduI	GDGCHC	1 cut(s)	145
SexAI	ACCWGGT	1 cut(s)	631
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	216, 392
SmoI	CTYRAG	2 cut(s)	216, 392
Sse9I	AATT	5 cut(s)	73, 187, 366, 447, 547
SsiI	CCGC	3 cut(s)	452, 714, 740
SspMI	CTAG	3 cut(s)	51, 863, 886
StyD4I	CCNGG	2 cut(s)	631, 879
StyI	CCWWGG	2 cut(s)	50, 862
TaaI	ACNGT	5 cut(s)	424, 492, 554, 832, 876
TaqI	TCGA	3 cut(s)	230, 746, 782
TasI	AATT	5 cut(s)	73, 187, 366, 447, 547
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	4 cut(s)	100, 254, 288, 397
Tru1I	TTAA	3 cut(s)	137, 393, 402
Tru9I	TTAA	3 cut(s)	137, 393, 402
TscAI	CASTG	3 cut(s)	208, 301, 495
TseFI	GTSAC	1 cut(s)	627
TseI	GCWGC	2 cut(s)	789, 845
Tsp45I	GTSAC	1 cut(s)	627
TspDTI	ATGAA	2 cut(s)	17, 764
TspGWI	ACGGA	1 cut(s)	740
TspRI	CASTG	3 cut(s)	208, 301, 495
Vha464I	CTTAAG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	695
XagI	CCTNNNNNAGG	1 cut(s)	636
XmaJI	CCTAGG	2 cut(s)	50, 862
XspI	CTAG	3 cut(s)	51, 863, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.