RchiOBHm_Chr7g0205731

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005714
Physical Location & Seq
Forward (+)
23517693 .. 23518479
787 bp
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UTR
Exon/CDS
Intron
PRQ18410

Sequence Viewer

Length: 654 bp
ATGAAATTTTTTTTAAAAAAAAACCCTAAATTGAAAAAGAGGAGAAGACGAGGAAAAGAGGAAGAACGACAGTTTGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGTTTAAGGGATCTTTCACAGAGGTGTCGCCAGCTTCAGGCAGTTAGGATATCAAATTGTAAGGGTGCCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGCGCTAGAGGGCATTTCGGGAATCGTCAGTGGAGGTGGGATTGAATATTTGAACCTATCTGGTTTGATTTGGCGTAGTGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAACCGTTGGCGATGAGTCTATTGTAGCAATTGCGGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGTTGGAAAAACTTCATGTGAATCGGTGTCGCAATCTATGTGATCGTGGTTTGGAGGCATTGCGAAATGGTTGCAAGCAGCTCTCTGTTATGTACATGAACGGTTGTGTTAAGGTTACATCTACAGCAGTAGAGATATTCAAATGTTATAGGGGTGATGTTACTGTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

217

Amino Acids

24.08

Weight (kDa)

9.31

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 31 - 208 2.2e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 390
AciI CCGC 1 cut(s) 434
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 2 cut(s) 92, 575
AfiI CCNNNNNNNGG 1 cut(s) 151
AflII CTTAAG 1 cut(s) 374
AgsI TTSAA 6 cut(s) 34, 200, 293, 301, 455, 622
AleI CACNNNNGTG 1 cut(s) 136
AluBI AGCT 5 cut(s) 148, 221, 233, 247, 562
AluI AGCT 5 cut(s) 148, 221, 233, 247, 562
AlwI GGATC 1 cut(s) 132
Aor13HI TCCGGA 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 559
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 647
AxyI CCTNAGG 1 cut(s) 368
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 571
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 374
BisI GCNGC 1 cut(s) 560
BlsI GCNGC 1 cut(s) 561
BmiI GGNNCC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 52
BsaBI GATNNNNATC 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 2 cut(s) 190, 340
Bse21I CCTNAGG 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 539
Bse8I GATNNNNATC 1 cut(s) 81
BseAI TCCGGA 1 cut(s) 390
BseGI GGATG 1 cut(s) 399
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 539
BseNI ACTGG 2 cut(s) 190, 340
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 571
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 151
Bsp13I TCCGGA 1 cut(s) 390
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 2 cut(s) 124, 523
BspACI CCGC 1 cut(s) 434
BspEI TCCGGA 1 cut(s) 390
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 539
BsrGI TGTACA 1 cut(s) 573
BsrI ACTGG 2 cut(s) 190, 340
BssMI GATC 2 cut(s) 124, 523
Bst4CI ACNGT 5 cut(s) 72, 406, 474, 584, 646
Bst6I CTCTTC 1 cut(s) 349
BstAFI CTTAAG 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 573
BstC8I GCNNGC 4 cut(s) 146, 245, 249, 557
BstDEI CTNAG 2 cut(s) 368, 466
BstF5I GGATG 1 cut(s) 399
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 2 cut(s) 127, 526
BstMBI GATC 2 cut(s) 124, 523
BstSFI CTRYAG 1 cut(s) 603
BstV1I GCAGC 1 cut(s) 571
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 368
BtgZI GCGATG 1 cut(s) 426
BtsCI GGATG 1 cut(s) 399
BtsIMutI CAGTG 3 cut(s) 183, 283, 470
Cac8I GCNNGC 4 cut(s) 146, 245, 249, 557
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 91, 574
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 4 cut(s) 98, 479, 497, 577
CviJI RGCY 7 cut(s) 148, 195, 221, 233, 247, 373, 562
CviKI_1 RGCY 7 cut(s) 148, 195, 221, 233, 247, 373, 562
CviQI GTAC 2 cut(s) 91, 574
DdeI CTNAG 2 cut(s) 368, 466
DpnI GATC 2 cut(s) 126, 525
DpnII GATC 2 cut(s) 124, 523
DraI TTTAAA 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Eco32I GATATC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 134
Eco81I CCTNAGG 1 cut(s) 368
EcoRV GATATC 1 cut(s) 165
FaeI CATG 4 cut(s) 101, 482, 500, 580
FaiI YATR 8 cut(s) 99, 225, 480, 498, 520, 572, 578, 630
FatI CATG 4 cut(s) 97, 478, 496, 576
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 1 cut(s) 406
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 560
HapII CCGG 1 cut(s) 391
HhaI GCGC 1 cut(s) 253
Hin1II CATG 4 cut(s) 101, 482, 500, 580
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 7 cut(s) 82, 110, 236, 270, 379, 416, 502
HpaII CCGG 1 cut(s) 391
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 3 cut(s) 267, 391, 479
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 431
HpyCH4III ACNGT 5 cut(s) 72, 406, 474, 584, 646
HpyCH4V TGCA 2 cut(s) 243, 555
HpyF3I CTNAG 2 cut(s) 368, 466
Hsp92II CATG 4 cut(s) 101, 482, 500, 580
HspAI GCGC 1 cut(s) 251
Kpn2I TCCGGA 1 cut(s) 390
Kzo9I GATC 2 cut(s) 124, 523
LpnPI CCDG 7 cut(s) 99, 137, 158, 171, 294, 321, 404
Lsp1109I GCAGC 1 cut(s) 571
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 595, 640
MalI GATC 2 cut(s) 126, 525
MboI GATC 2 cut(s) 124, 523
MboII GAAGA 4 cut(s) 57, 74, 366, 467
MfeI CAATTG 2 cut(s) 348, 429
MflI RGATCY 1 cut(s) 124
MluCI AATT 5 cut(s) 5, 29, 169, 348, 429
MlyI GAGTC 2 cut(s) 104, 425
MmeI TCCRAC 1 cut(s) 465
MroI TCCGGA 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 5 cut(s) 14, 119, 375, 384, 591
MslI CAYNNNNRTG 1 cut(s) 136
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 1 cut(s) 391
MunI CAATTG 2 cut(s) 348, 429
NdeII GATC 2 cut(s) 124, 523
NlaIII CATG 4 cut(s) 101, 482, 500, 580
NlaIV GGNNCC 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 136
PagI TCATGA 1 cut(s) 478
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 5 cut(s) 82, 236, 270, 379, 502
PkrI GCNGC 1 cut(s) 561
PleI GAGTC 2 cut(s) 104, 424
PpsI GAGTC 2 cut(s) 104, 424
PspN4I GGNNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 92, 575
RsaNI GTAC 2 cut(s) 91, 574
RseI CAYNNNNRTG 1 cut(s) 136
SaqAI TTAA 5 cut(s) 14, 119, 375, 384, 591
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 2 cut(s) 124, 523
SchI GAGTC 2 cut(s) 104, 425
SfcI CTRYAG 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 5 cut(s) 5, 29, 169, 348, 429
SsiI CCGC 1 cut(s) 434
SspI AATATT 1 cut(s) 296
SspMI CTAG 1 cut(s) 254
TaaI ACNGT 5 cut(s) 72, 406, 474, 584, 646
TaqI TCGA 1 cut(s) 212
TasI AATT 5 cut(s) 5, 29, 169, 348, 429
TatI WGTACW 2 cut(s) 90, 573
TfiI GAWTC 5 cut(s) 82, 236, 270, 379, 502
Tru1I TTAA 5 cut(s) 14, 119, 375, 384, 591
Tru9I TTAA 5 cut(s) 14, 119, 375, 384, 591
TscAI CASTG 3 cut(s) 190, 283, 477
TseI GCWGC 1 cut(s) 559
TspDTI ATGAA 3 cut(s) 17, 485, 593
TspRI CASTG 3 cut(s) 190, 283, 477
Vha464I CTTAAG 1 cut(s) 374
XapI RAATTY 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.