Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005714

Physical Location & Seq

Genomic Coordinates Forward (+)

43845005 .. 43846189

Gene Structure 1185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG250500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCAGCAAACTACTTGTAACTCTAGTACTAATGCTCTTACTTCCATTATGGACTTGCCTGATGATTGTCTCTTCTTTATTTTCCACCGCCTTGATTCTTCCTCTGACCGTGAATCCTTTGGCTTGACTTGTCATCGCTGTCTTCGTATTCAAAATCTTAGCCGCCGGTCCTTGCACTTTGAGTGTTCATTTAGGCAACTTGACAAACCCTCATCATCACATTCCAACATTACCATTAACAGCTCCCATGTCCATAGGCTGCTTACTCGCTTTCAGCATTTGCGCTCATTGACCCTATCTGGTTGCACACACTTACCTGATTCAAGCTTGAGCCATTTGGCAAGCTATGGTTCAAAGTTGCACACACTTCACCTGGATTGCTGTTTTGGTATTACTGATCATGGGTTGTCTGTGGTAGCTACTAGTTGCCCCTCATTACAAGTCATCAGCCTTTATCGCTGCCAAATTACTGATTCTGGGCTAGAAAGTTTGTCTAATTCTTGCTCAACTTTGAAGGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGTTTAAGGGCTCTTTCACAGAGGTGTCGCCAGCTTCAGGCAGTTAGGATATCAAATTGTAAGGGTGCCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGCGCCAGAGGGCATTTCGGGAATCGTCAGTGGAGGTGGGATTGAATATTTGAACCTATCTGGTTTGATTTGGCGTAGTGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAGGATTCTTAACCTCCGGATGTGTAGAACCGTTGGCGATGAGTCTATTGTAGCAATTGCGGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGGTCAGGATAGTTGGGTGGTCTTCTATTGGGACAAACTGCCAAAAGTTGGAAAAACTTCATGTGAATCGGTGTCGCAATCTATGTGATCGTGGCTTGGAGGCATTGCGAAATGGTTGCAAGCAGCTCTCTGTTCTGTACATGAATGGTTGTGTTAAGATTACATCTACAGCACTAGAGATATTCAAATGTTATAGGGGTGATGTTACTGTCGAGGTAGAAGAAAAGATGTGTATAGGGCCTAGCTGGTCATTATGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

394

Amino Acids

43.22

Weight (kDa)

8.22

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	131 - 291	2.5e-10	Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885	PF25372	281 - 371	8.2e-06	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07550 AT3G07550 AT3G07550
fragaria_vesca	FvH4_2g17281
malus_domestica	MD05G1151800.v1.1 MD10G1146000.v1.1
prunus_persica	Prupe.8G184400_v2.0.a1
pyrus_communis	pycom05g14620
rosa_chinensis	RchiOBHm_Chr5g0064201 RchiOBHm_Chr6g0281791 RchiOBHm_Chr7g0205731
rosa_laevigata	RLG00000008497 RLG00000012934
rosa_multiflora	Rmu_sc0002083.1_g000004 Rmu_ssc0000126.1_g000045
rosa_roxburghii	Rroxscaffold_1G00055070 Rroxscaffold_7G00186800
rosa_rugosa	Rorug04G0090400
rosa_samantha	Rh6AG256500 Rh6BG259500 Rh6CG258400 Rh6DG250500 Rh7AG309600 Rh7CG118900 Rh7CG328800 Rh7CG497900 Rh7DG466000
rosa_wichuraiana	Rw6G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	620
AccB7I	CCANNNNNTGG	1 cut(s)	970
AccIII	TCCGGA	1 cut(s)	831
AciI	CCGC	3 cut(s)	88, 163, 875
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	3 cut(s)	28, 533, 1061
AfiI	CCNNNNNNNGG	2 cut(s)	592, 970
AgsI	TTSAA	9 cut(s)	152, 324, 354, 514, 641, 734, 742, 896, 1108
AhlI	ACTAGT	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	372
AleI	CACNNNNGTG	1 cut(s)	577
Alw26I	GTCTC	1 cut(s)	74
Aor13HI	TCCGGA	1 cut(s)	831
AoxI	GGCC	1 cut(s)	1160
ApeKI	GCWGC	4 cut(s)	4, 259, 459, 1045
Asp700I	GAANNNNTTC	1 cut(s)	978
AspLEI	GCGC	2 cut(s)	285, 694
AspS9I	GGNCC	2 cut(s)	168, 1160
AsuHPI	GGTGA	2 cut(s)	362, 1133
AvaII	GGWCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	809
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	568
BbsI	GAAGAC	2 cut(s)	134, 936
BbvI	GCAGC	4 cut(s)	16, 246, 446, 1057
BcgI	CGANNNNNNTGC	2 cut(s)	1020, 1054
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	74
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	5 cut(s)	24, 423, 482, 1097, 1164
BfmI	CTRYAG	1 cut(s)	1089
BisI	GCNGC	5 cut(s)	5, 163, 260, 460, 1046
BlsI	GCNGC	5 cut(s)	6, 164, 261, 461, 1047
BmcAI	AGTACT	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	168, 1160
BmiI	GGNNCC	1 cut(s)	622
BmrFI	CCNGG	1 cut(s)	374
BpiI	GAAGAC	2 cut(s)	134, 936
Bpu10I	CCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	522
BsaWI	WCCGGW	1 cut(s)	831
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 970
Bse118I	RCCGGY	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	631, 781
Bse21I	CCTNAGG	1 cut(s)	809
Bse3DI	GCAATG	1 cut(s)	1025
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	831
BseBI	CCWGG	1 cut(s)	374
BseGI	GGATG	2 cut(s)	523, 840
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	592, 970
BseMI	GCAATG	1 cut(s)	1025
BseNI	ACTGG	2 cut(s)	631, 781
BseXI	GCAGC	4 cut(s)	16, 246, 446, 1057
BshFI	GGCC	1 cut(s)	1162
BshNI	GGYRCC	1 cut(s)	620
BsiSI	CCGG	2 cut(s)	166, 832
BslFI	GGGAC	1 cut(s)	967
BslI	CCNNNNNNNGG	2 cut(s)	592, 970
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	967
BsnI	GGCC	1 cut(s)	1162
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp13I	TCCGGA	1 cut(s)	831
Bsp1407I	TGTACA	1 cut(s)	1059
Bsp143I	GATC	2 cut(s)	397, 1009
BspACI	CCGC	3 cut(s)	88, 163, 875
BspANI	GGCC	1 cut(s)	1162
BspEI	TCCGGA	1 cut(s)	831
BspHI	TCATGA	1 cut(s)	919
BspLI	GGNNCC	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	1025
BsrFI	RCCGGY	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	1059
BsrI	ACTGG	2 cut(s)	631, 781
BssAI	RCCGGY	1 cut(s)	165
BssMI	GATC	2 cut(s)	397, 1009
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	4 cut(s)	110, 847, 915, 1132
Bst6I	CTCTTC	2 cut(s)	77, 790
BstAUI	TGTACA	1 cut(s)	1059
BstC8I	GCNNGC	5 cut(s)	343, 587, 686, 690, 1043
BstDEI	CTNAG	4 cut(s)	158, 809, 815, 907
BstF5I	GGATG	2 cut(s)	523, 840
BstHHI	GCGC	2 cut(s)	285, 694
BstKTI	GATC	2 cut(s)	400, 1012
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	397, 1009
BstMWI	GCNNNNNNNGC	1 cut(s)	456
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	1089
BstV1I	GCAGC	4 cut(s)	16, 246, 446, 1057
BstV2I	GAAGAC	2 cut(s)	134, 936
Bsu36I	CCTNAGG	1 cut(s)	809
BsuRI	GGCC	1 cut(s)	1162
BtgZI	GCGATG	2 cut(s)	119, 867
BtsCI	GGATG	2 cut(s)	523, 840
BtsIMutI	CAGTG	3 cut(s)	624, 724, 911
Cac8I	GCNNGC	5 cut(s)	343, 587, 686, 690, 1043
CciI	TCATGA	1 cut(s)	919
CfoI	GCGC	2 cut(s)	285, 694
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	168, 1160
Csp6I	GTAC	3 cut(s)	27, 532, 1060
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	6 cut(s)	248, 401, 539, 920, 983, 1063
CviQI	GTAC	3 cut(s)	27, 532, 1060
DdeI	CTNAG	4 cut(s)	158, 809, 815, 907
DpnI	GATC	2 cut(s)	399, 1011
DpnII	GATC	2 cut(s)	397, 1009
Eam1104I	CTCTTC	2 cut(s)	77, 790
EarI	CTCTTC	2 cut(s)	77, 790
Eco24I	GRGCYC	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	575
Eco81I	CCTNAGG	1 cut(s)	809
EcoO109I	RGGNCCY	1 cut(s)	1160
EcoRII	CCWGG	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	568
FaeI	CATG	6 cut(s)	251, 404, 542, 923, 986, 1066
FaqI	GGGAC	1 cut(s)	967
FatI	CATG	6 cut(s)	247, 400, 538, 919, 982, 1062
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	5 cut(s)	5, 163, 260, 460, 1046
FokI	GGATG	2 cut(s)	530, 847
FriOI	GRGCYC	1 cut(s)	568
Fsp4HI	GCNGC	5 cut(s)	5, 163, 260, 460, 1046
FspBI	CTAG	5 cut(s)	24, 423, 482, 1097, 1164
GlaI	GCGC	2 cut(s)	284, 693
GluI	GCNGC	5 cut(s)	5, 163, 260, 460, 1046
HaeIII	GGCC	1 cut(s)	1162
HapII	CCGG	2 cut(s)	166, 832
HhaI	GCGC	2 cut(s)	285, 694
Hin1II	CATG	6 cut(s)	251, 404, 542, 923, 986, 1066
Hin6I	GCGC	2 cut(s)	283, 692
HinP1I	GCGC	2 cut(s)	283, 692
HindIII	AAGCTT	2 cut(s)	325, 686
HpaII	CCGG	2 cut(s)	166, 832
HphI	GGTGA	2 cut(s)	362, 1133
Hpy166II	GTNNAC	1 cut(s)	887
Hpy188I	TCNGA	2 cut(s)	106, 550
Hpy188III	TCNNGA	4 cut(s)	708, 832, 920, 928
Hpy8I	GTNNAC	1 cut(s)	887
HpyAV	CCTTC	2 cut(s)	508, 872
HpyCH4III	ACNGT	4 cut(s)	110, 847, 915, 1132
HpyCH4V	TGCA	6 cut(s)	4, 175, 306, 361, 684, 1041
HpyF10VI	GCNNNNNNNGC	1 cut(s)	456
HpyF3I	CTNAG	4 cut(s)	158, 809, 815, 907
Hsp92II	CATG	6 cut(s)	251, 404, 542, 923, 986, 1066
HspAI	GCGC	2 cut(s)	283, 692
Kpn2I	TCCGGA	1 cut(s)	831
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	397, 1009
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	4 cut(s)	16, 246, 446, 1057
MaeI	CTAG	5 cut(s)	24, 423, 482, 1097, 1164
MaeIII	GTNAC	2 cut(s)	17, 1126
MalI	GATC	2 cut(s)	399, 1011
MboI	GATC	2 cut(s)	397, 1009
MboII	GAAGA	7 cut(s)	64, 90, 134, 807, 908, 936, 1154
MfeI	CAATTG	2 cut(s)	789, 870
MhlI	GDGCHC	1 cut(s)	568
MluCI	AATT	5 cut(s)	465, 496, 610, 789, 870
MlyI	GAGTC	2 cut(s)	545, 866
MmeI	TCCRAC	2 cut(s)	249, 951
MroI	TCCGGA	1 cut(s)	831
MroXI	GAANNNNTTC	1 cut(s)	978
MseI	TTAA	4 cut(s)	237, 560, 825, 1077
MslI	CAYNNNNRTG	1 cut(s)	577
MspI	CCGG	2 cut(s)	166, 832
MspR9I	CCNGG	1 cut(s)	374
MunI	CAATTG	2 cut(s)	789, 870
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	456
NdeII	GATC	2 cut(s)	397, 1009
NlaIII	CATG	6 cut(s)	251, 404, 542, 923, 986, 1066
NlaIV	GGNNCC	1 cut(s)	622
OliI	CACNNNNGTG	1 cut(s)	577
PagI	TCATGA	1 cut(s)	919
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	978
PfeI	GAWTC	9 cut(s)	95, 113, 320, 473, 523, 677, 711, 820, 988
PflMI	CCANNNNNTGG	1 cut(s)	970
PkrI	GCNGC	5 cut(s)	6, 164, 261, 461, 1047
PleI	GAGTC	2 cut(s)	545, 865
PpsI	GAGTC	2 cut(s)	545, 865
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	622
PspPI	GGNCC	2 cut(s)	168, 1160
RsaI	GTAC	3 cut(s)	28, 533, 1061
RsaNI	GTAC	3 cut(s)	27, 532, 1060
RseI	CAYNNNNRTG	1 cut(s)	577
SaqAI	TTAA	4 cut(s)	237, 560, 825, 1077
SatI	GCNGC	5 cut(s)	5, 163, 260, 460, 1046
Sau3AI	GATC	2 cut(s)	397, 1009
Sau96I	GGNCC	2 cut(s)	168, 1160
ScaI	AGTACT	1 cut(s)	28
SchI	GAGTC	2 cut(s)	545, 866
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	568
SfcI	CTRYAG	1 cut(s)	1089
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	5 cut(s)	465, 496, 610, 789, 870
SsiI	CCGC	3 cut(s)	88, 163, 875
SspI	AATATT	1 cut(s)	737
SspMI	CTAG	5 cut(s)	24, 423, 482, 1097, 1164
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	4 cut(s)	110, 847, 915, 1132
TaqI	TCGA	2 cut(s)	653, 1134
TasI	AATT	5 cut(s)	465, 496, 610, 789, 870
TatI	WGTACW	3 cut(s)	26, 531, 1059
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	9 cut(s)	95, 113, 320, 473, 523, 677, 711, 820, 988
Tru1I	TTAA	4 cut(s)	237, 560, 825, 1077
Tru9I	TTAA	4 cut(s)	237, 560, 825, 1077
TscAI	CASTG	3 cut(s)	631, 724, 918
TseI	GCWGC	4 cut(s)	4, 259, 459, 1045
TspDTI	ATGAA	3 cut(s)	177, 971, 1079
TspRI	CASTG	3 cut(s)	631, 724, 918
Van91I	CCANNNNNTGG	1 cut(s)	970
VpaK11BI	GGWCC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	978
XspI	CTAG	5 cut(s)	24, 423, 482, 1097, 1164
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.