Rorug04G0090400

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
14007020 .. 14009096
2077 bp
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UTR
Exon/CDS
Intron
Rorug04G0090400.1

Sequence Viewer

Length: 537 bp
ATGGATGGATTGCAAATGCGGGAATTTAAGACGGTTACGAAGGAAGTATGCCAGCTACCAACATTGTTATCTTCTGCTCTCTTTAGAGAGATAGATGTGGAGGCAAACAATCGAAAGGTGAAAGTGTATAGTAGTAATTATACATTCATTGAGACCAGATGGAAGAAGCTCAGAGTTGGTGATCTTGTCAAGGTGCACAAGGATGAGTACTTTCTTGCTGATCTGCTTTTGCTTTCATCAAGCTATGAGGATGGCATTTGCTATGTGGAAACTATGAACCTTGATGGAGAAACAAATTTAAAATTGAACCATGCATTGGAGGCGACATCCCATCTTCATGATGAAAATTCCTTGGAAAGATTTAGGGCAGTGATCAAGTGTGAGGACCCAAATAAAATTCTATATTCATTTGTTGGGATTTTGTTCTATAACGGCAGAGAACACCCACTTTCCTTGCAACAGATGCTGAAAAATACAGAATATGTCCATGGATTTGTTGTTTTCACTGGGCATGACACAGAAGTGCGGCAAAGTTAG
Functional Annotation

Protein Analysis

178

Amino Acids

20.67

Weight (kDa)

5.8

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 316
AciI CCGC 2 cut(s) 19, 526
AcsI RAATTY 4 cut(s) 23, 295, 346, 396
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 3 cut(s) 55, 169, 243
AluI AGCT 3 cut(s) 55, 169, 243
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 146
Alw44I GTGCAC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 466
ApaLI GTGCAC 1 cut(s) 194
ApoI RAATTY 4 cut(s) 23, 295, 346, 396
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 2 cut(s) 130, 191
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 198
BccI CCATC 4 cut(s) 153, 245, 278, 339
BceAI ACGGC 1 cut(s) 448
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 146
BisI GCNGC 1 cut(s) 527
BlsI GCNGC 1 cut(s) 528
BmcAI AGTACT 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 387
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 453
BmuI ACTGGG 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 351, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 511
BseDI CCNNGG 2 cut(s) 351, 487
BseGI GGATG 4 cut(s) 10, 208, 256, 326
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 511
BseSI GKGCMC 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 3 cut(s) 181, 220, 372
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 2 cut(s) 19, 526
BspCNI CTCAG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 387
BspTNI GGTCTC 1 cut(s) 146
BsrI ACTGG 1 cut(s) 511
BssECI CCNNGG 2 cut(s) 351, 487
BssMI GATC 3 cut(s) 181, 220, 372
BssT1I CCWWGG 2 cut(s) 351, 487
Bst4CI ACNGT 1 cut(s) 34
BstAPI GCANNNNNTGC 1 cut(s) 463
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 170
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 4 cut(s) 10, 208, 256, 326
BstKTI GATC 3 cut(s) 184, 223, 375
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 3 cut(s) 181, 220, 372
BstMWI GCNNNNNNNGC 2 cut(s) 320, 463
BstSLI GKGCMC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 4 cut(s) 10, 208, 256, 326
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 375, 504
Cac8I GCNNGC 1 cut(s) 53
CaiI CAGNNNCTG 1 cut(s) 466
CciI TCATGA 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 208
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 4 cut(s) 311, 338, 488, 512
CviJI RGCY 3 cut(s) 55, 169, 243
CviKI_1 RGCY 3 cut(s) 55, 169, 243
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 170
DpnI GATC 3 cut(s) 183, 222, 374
DpnII GATC 3 cut(s) 181, 220, 372
DraI TTTAAA 1 cut(s) 300
Eco130I CCWWGG 2 cut(s) 351, 487
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 385
EcoT14I CCWWGG 2 cut(s) 351, 487
EcoT22I ATGCAT 1 cut(s) 316
ErhI CCWWGG 2 cut(s) 351, 487
FaeI CATG 4 cut(s) 314, 341, 491, 515
FatI CATG 4 cut(s) 310, 337, 487, 511
FauI CCCGC 1 cut(s) 12
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 527
FokI GGATG 4 cut(s) 17, 215, 263, 313
Fsp4HI GCNGC 1 cut(s) 527
GluI GCNGC 1 cut(s) 527
Hin1II CATG 4 cut(s) 314, 341, 491, 515
HphI GGTGA 2 cut(s) 130, 191
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 13, 196, 314, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 463
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 4 cut(s) 314, 341, 491, 515
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 3 cut(s) 181, 220, 372
LpnPI CCDG 3 cut(s) 65, 169, 492
LweI GCATC 1 cut(s) 453
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 183, 222, 374
MboI GATC 3 cut(s) 181, 220, 372
MboII GAAGA 3 cut(s) 63, 175, 326
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 6 cut(s) 23, 136, 295, 302, 346, 396
MnlI CCTC 4 cut(s) 94, 241, 313, 376
Mph1103I ATGCAT 1 cut(s) 316
MseI TTAA 2 cut(s) 27, 299
MslI CAYNNNNRTG 3 cut(s) 201, 336, 521
MwoI GCNNNNNNNGC 2 cut(s) 320, 463
NcoI CCATGG 1 cut(s) 487
NdeII GATC 3 cut(s) 181, 220, 372
NlaIII CATG 4 cut(s) 314, 341, 491, 515
NlaIV GGNNCC 1 cut(s) 387
NsiI ATGCAT 1 cut(s) 316
OliI CACNNNNGTG 1 cut(s) 521
PagI TCATGA 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 1 cut(s) 528
PpuMI RGGWCCY 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 1 cut(s) 385
PspPPI RGGWCCY 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 466
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 3 cut(s) 201, 336, 521
SaqAI TTAA 2 cut(s) 27, 299
SatI GCNGC 1 cut(s) 527
Sau3AI GATC 3 cut(s) 181, 220, 372
Sau96I GGNCC 1 cut(s) 385
ScaI AGTACT 1 cut(s) 209
SduI GDGCHC 1 cut(s) 198
SetI ASST 6 cut(s) 57, 120, 171, 195, 245, 282
SfaNI GCATC 1 cut(s) 453
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 3 cut(s) 201, 336, 521
Sse9I AATT 6 cut(s) 23, 136, 295, 302, 346, 396
SsiI CCGC 2 cut(s) 19, 526
StyI CCWWGG 2 cut(s) 351, 487
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 112
TasI AATT 6 cut(s) 23, 136, 295, 302, 346, 396
TatI WGTACW 1 cut(s) 207
TauI GCSGC 1 cut(s) 529
Tru1I TTAA 2 cut(s) 27, 299
Tru9I TTAA 2 cut(s) 27, 299
TscAI CASTG 2 cut(s) 375, 511
TspDTI ATGAA 6 cut(s) 136, 225, 290, 326, 357, 396
TspRI CASTG 2 cut(s) 375, 511
Van91I CCANNNNNTGG 1 cut(s) 316
VneI GTGCAC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 4 cut(s) 23, 295, 346, 396
ZrmI AGTACT 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.