Rh7BG423600

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000708
Physical Location & Seq
Forward (+)
48242424 .. 48246146
3723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG423600.1

Sequence Viewer

Length: 558 bp
ATGGAACAACACTTGCGAGGTTCTGAGTCGCCGATCGACGTCTTCAAGTACCGCCGTCGTCAACTATCGCCGCTCGCGCCTCTGCACAATCTGATCACGCCGCAGACGGAGGACGGCGACGGCGTTTCGGTTGCCGAAAGCTACGGCTCCAAAGGCCAGTTTGTATATGGAAAAGAAAATCTGCATCCAACTTCTTTCCCTACCAAGAACAAATCCGAGGCACAGATGTGCGAGGCTACAAGTAGCTCAGGATTATGCACCCCCAGCCTGAAGTCCCACTTTGCCTATCAGGTCATGGCATCCAGAGAAGCAGCAGCAGTAGCAGCATTAGCCTCATTGCCAAAGCTAAATAACACCATTGAGACCCCGATTACTGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTTCAACTGAAATACCTTCATCGAAGGAAGATGTGGATGCATCTGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCTACTAGAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

185

Amino Acids

20.11

Weight (kDa)

5.61

Isoelectric Point (pI)

67.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccBSI CCGCTC 1 cut(s) 73
AccII CGCG 1 cut(s) 77
AciI CCGC 3 cut(s) 52, 71, 101
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 2 cut(s) 46, 435
AleI CACNNNNGTG 1 cut(s) 226
AluBI AGCT 4 cut(s) 141, 246, 346, 384
AluI AGCT 4 cut(s) 141, 246, 346, 384
Alw26I GTCTC 1 cut(s) 356
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 4 cut(s) 311, 314, 323, 384
ApoI RAATTY 1 cut(s) 543
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 390
AvaII GGWCC 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 4 cut(s) 323, 326, 335, 371
BccI CCATC 1 cut(s) 404
BceAI ACGGC 4 cut(s) 39, 130, 136, 160
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 1 cut(s) 513
BisI GCNGC 6 cut(s) 71, 101, 312, 315, 324, 385
BlsI GCNGC 6 cut(s) 72, 102, 313, 316, 325, 386
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 4 cut(s) 193, 308, 457, 479
BpiI GAAGAC 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 157, 398
Bse3DI GCAATG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 3 cut(s) 184, 299, 472
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 3 cut(s) 15, 261, 479
BseNI ACTGG 2 cut(s) 157, 398
BseXI GCAGC 4 cut(s) 323, 326, 335, 371
BseYI CCCAGC 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 356
Bsp143I GATC 2 cut(s) 33, 93
BspACI CCGC 3 cut(s) 52, 71, 101
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 3 cut(s) 16, 260, 480
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 2 cut(s) 157, 398
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 33, 93
BssNI GRCGYC 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 376, 534
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 24, 247, 488
BstEII GGTNACC 1 cut(s) 396
BstF5I GGATG 3 cut(s) 184, 299, 472
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 36, 96
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 33, 93
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 6 cut(s) 76, 153, 264, 320, 323, 329
BstPI GGTNACC 1 cut(s) 396
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 4 cut(s) 323, 326, 335, 371
BstV2I GAAGAC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 410
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 3 cut(s) 184, 299, 472
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 477, 530
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 503
Csp6I GTAC 1 cut(s) 49
CviAII CATG 1 cut(s) 295
CviJI RGCY 9 cut(s) 141, 147, 156, 236, 246, 267, 332, 346, 384
CviKI_1 RGCY 9 cut(s) 141, 147, 156, 236, 246, 267, 332, 346, 384
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 24, 247, 488
DpnI GATC 2 cut(s) 35, 95
DpnII GATC 2 cut(s) 33, 93
Eco31I GGTCTC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 503
Eco57I CTGAAG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 396
EcoO65I GGTNACC 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 472
FaeI CATG 1 cut(s) 298
FaiI YATR 5 cut(s) 166, 168, 256, 296, 501
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 259
FatI CATG 1 cut(s) 294
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 6 cut(s) 71, 101, 312, 315, 324, 385
FokI GGATG 3 cut(s) 171, 286, 479
Fsp4HI GCNGC 6 cut(s) 71, 101, 312, 315, 324, 385
FspBI CTAG 1 cut(s) 513
GlaI GCGC 1 cut(s) 78
GluI GCNGC 6 cut(s) 71, 101, 312, 315, 324, 385
GsaI CCCAGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 156
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HinfI GANTC 2 cut(s) 26, 490
HphI GGTGA 1 cut(s) 390
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 3 cut(s) 25, 93, 217
Hpy188III TCNNGA 2 cut(s) 249, 303
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 3 cut(s) 41, 60, 122
HpyAV CCTTC 5 cut(s) 441, 448, 456, 513, 516
HpyCH4III ACNGT 2 cut(s) 376, 534
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 5 cut(s) 85, 184, 258, 387, 470
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 153, 264, 320, 323, 329
HpyF3I CTNAG 3 cut(s) 24, 247, 488
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 2 cut(s) 33, 93
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 8 cut(s) 170, 234, 275, 277, 281, 316, 379, 459
Lsp1109I GCAGC 4 cut(s) 323, 326, 335, 371
LweI GCATC 4 cut(s) 193, 308, 457, 479
MaeI CTAG 1 cut(s) 513
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 396
MalI GATC 2 cut(s) 35, 95
MbiI CCGCTC 1 cut(s) 73
MboI GATC 2 cut(s) 33, 93
MboII GAAGA 3 cut(s) 34, 470, 528
MluCI AATT 1 cut(s) 543
MlyI GAGTC 2 cut(s) 35, 499
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 7 cut(s) 11, 90, 103, 211, 226, 343, 412
Mph1103I ATGCAT 1 cut(s) 472
MslI CAYNNNNRTG 1 cut(s) 226
MspA1I CMGCKG 1 cut(s) 384
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 6 cut(s) 76, 153, 264, 320, 323, 329
NdeII GATC 2 cut(s) 33, 93
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 472
OliI CACNNNNGTG 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PkrI GCNGC 6 cut(s) 72, 102, 313, 316, 325, 386
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 2 cut(s) 34, 498
PpsI GAGTC 2 cut(s) 34, 498
PspEI GGTNACC 1 cut(s) 396
PspFI CCCAGC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 503
PvuI CGATCG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 384
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 226
SatI GCNGC 6 cut(s) 71, 101, 312, 315, 324, 385
Sau3AI GATC 2 cut(s) 33, 93
Sau96I GGNCC 1 cut(s) 503
SchI GAGTC 2 cut(s) 35, 499
SetI ASST 9 cut(s) 22, 42, 143, 248, 294, 348, 386, 423, 448
SfaNI GCATC 4 cut(s) 193, 308, 457, 479
SinI GGWCC 1 cut(s) 503
SmiMI CAYNNNNRTG 1 cut(s) 226
Sse9I AATT 1 cut(s) 543
SsiI CCGC 3 cut(s) 52, 71, 101
SspMI CTAG 1 cut(s) 513
TaaI ACNGT 2 cut(s) 376, 534
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 36, 452
TasI AATT 1 cut(s) 543
TauI GCSGC 2 cut(s) 73, 103
TscAI CASTG 2 cut(s) 484, 537
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 4 cut(s) 311, 314, 323, 384
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 1 cut(s) 438
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 2 cut(s) 484, 537
VpaK11BI GGWCC 1 cut(s) 503
XapI RAATTY 1 cut(s) 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XspI CTAG 1 cut(s) 513
ZraI GACGTC 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.