Rh7DG439000

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000708
Physical Location & Seq
Reverse (-)
62424332 .. 62425687
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG439000.1

Sequence Viewer

Length: 450 bp
ATGGCGCCGCAGACGGAGGACGGCGTTTCGGTTGCCGAAAGCTACGGCTCCAAAGCCCAGTTTGAATATGGAAAAGAAAATCTGCATCCAACTTCTTTCCCTGCCAAGAACAAATCCGAGGCACAGATGTGCGAGGCTACAAGTAGCTCAGGATTATGCACCCCCAGCCTGAAGTCCCACTTTGCCTATCAGGTCATGGCATCCAGAGAAGCAGCAGCAGCAGCCTCATCGCCAAAGCCAAATAACGCCATTGAGACCCTGATTACTGTCATCAGCTGGAAGGACTGGTCACCCCAAGGTGATGGCATTGAGGTTATCTTGCCTTCAACTGAGATACCCTCATCGAAGGAAGATGTGGATGCATCCGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCTACTAGAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

149

Amino Acids

15.95

Weight (kDa)

5.08

Isoelectric Point (pI)

65.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 65, 327
AleI CACNNNNGTG 1 cut(s) 127
AluBI AGCT 3 cut(s) 42, 147, 276
AluI AGCT 3 cut(s) 42, 147, 276
Alw26I GTCTC 1 cut(s) 248
ApeKI GCWGC 4 cut(s) 212, 215, 218, 221
ApoI RAATTY 1 cut(s) 435
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 282, 311
AvaII GGWCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 4 cut(s) 224, 227, 230, 233
BccI CCATC 1 cut(s) 296
BceAI ACGGC 2 cut(s) 37, 61
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 5 cut(s) 8, 213, 216, 219, 222
BlsI GCNGC 5 cut(s) 9, 214, 217, 220, 223
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 6, 49
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 4 cut(s) 94, 209, 349, 371
BmuI ACTGGG 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 323, 355
Bpu10I CCTNAGC 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 117, 295
Bse1I ACTGG 2 cut(s) 58, 290
BseDI CCNNGG 2 cut(s) 117, 295
BseGI GGATG 4 cut(s) 85, 200, 362, 364
BseMII CTCAG 3 cut(s) 162, 321, 371
BseNI ACTGG 2 cut(s) 58, 290
BseXI GCAGC 4 cut(s) 224, 227, 230, 233
BseYI CCCAGC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 366
BslFI GGGAC 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 160
Bso31I GGTCTC 1 cut(s) 248
BspACI CCGC 1 cut(s) 8
BspCNI CTCAG 3 cut(s) 161, 322, 372
BspLI GGNNCC 2 cut(s) 6, 49
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 2 cut(s) 58, 290
BssECI CCNNGG 2 cut(s) 117, 295
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 268, 426
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 3 cut(s) 148, 330, 380
BstEII GGTNACC 1 cut(s) 288
BstF5I GGATG 4 cut(s) 85, 200, 362, 364
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 248
BstMWI GCNNNNNNNGC 3 cut(s) 165, 218, 221
BstPI GGTNACC 1 cut(s) 288
BstV1I GCAGC 4 cut(s) 224, 227, 230, 233
BstXI CCANNNNNNTGG 1 cut(s) 302
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 4 cut(s) 85, 200, 362, 364
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 2 cut(s) 369, 422
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 395
CviAII CATG 1 cut(s) 196
CviJI RGCY 9 cut(s) 42, 48, 56, 137, 147, 168, 224, 238, 276
CviKI_1 RGCY 9 cut(s) 42, 48, 56, 137, 147, 168, 224, 238, 276
DdeI CTNAG 3 cut(s) 148, 330, 380
DinI GGCGCC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 295
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 288
EcoO65I GGTNACC 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 295
EcoT22I ATGCAT 1 cut(s) 364
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 1 cut(s) 199
FaiI YATR 4 cut(s) 69, 157, 197, 393
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 5 cut(s) 8, 213, 216, 219, 222
FokI GGATG 4 cut(s) 72, 187, 349, 371
Fsp4HI GCNGC 5 cut(s) 8, 213, 216, 219, 222
FspBI CTAG 1 cut(s) 405
GlaI GCGC 1 cut(s) 6
GluI GCNGC 5 cut(s) 8, 213, 216, 219, 222
GsaI CCCAGC 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 366
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 382
HpaII CCGG 1 cut(s) 366
HphI GGTGA 2 cut(s) 282, 311
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 150, 204
HpyAV CCTTC 5 cut(s) 274, 333, 340, 405, 408
HpyCH4III ACNGT 2 cut(s) 268, 426
HpyCH4V TGCA 3 cut(s) 85, 159, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 218, 221
HpyF3I CTNAG 3 cut(s) 148, 330, 380
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 53
Lsp1109I GCAGC 4 cut(s) 224, 227, 230, 233
LweI GCATC 4 cut(s) 94, 209, 349, 371
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 288
MboII GAAGA 2 cut(s) 362, 420
MluCI AATT 1 cut(s) 435
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 6 cut(s) 10, 112, 127, 235, 304, 349
Mph1103I ATGCAT 1 cut(s) 364
MslI CAYNNNNRTG 1 cut(s) 127
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 1 cut(s) 366
MwoI GCNNNNNNNGC 3 cut(s) 165, 218, 221
NarI GGCGCC 1 cut(s) 5
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 6, 49
NmuCI GTSAC 1 cut(s) 288
NsiI ATGCAT 1 cut(s) 364
OliI CACNNNNGTG 1 cut(s) 127
PkrI GCNGC 5 cut(s) 9, 214, 217, 220, 223
PleI GAGTC 1 cut(s) 390
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 390
PspEI GGTNACC 1 cut(s) 288
PspFI CCCAGC 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 6, 49
PspPI GGNCC 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 127
SatI GCNGC 5 cut(s) 8, 213, 216, 219, 222
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 1 cut(s) 391
SetI ASST 6 cut(s) 44, 149, 195, 278, 301, 315
SfaNI GCATC 4 cut(s) 94, 209, 349, 371
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 127
Sse9I AATT 1 cut(s) 435
SsiI CCGC 1 cut(s) 8
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 405
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 2 cut(s) 268, 426
TaqI TCGA 1 cut(s) 344
TasI AATT 1 cut(s) 435
TauI GCSGC 1 cut(s) 10
TscAI CASTG 2 cut(s) 376, 429
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 4 cut(s) 212, 215, 218, 221
Tsp45I GTSAC 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 2 cut(s) 376, 429
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XspI CTAG 1 cut(s) 405
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.