Rh7DG368100

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000708
Physical Location & Seq
Forward (+)
49767024 .. 49771332
4309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG368100.1

Sequence Viewer

Length: 333 bp
ATGTGCAAGTCTACAAGTAGCTCAGGATTATCCACACCCAGCCCAAAGTCCCACTTTGCCCATCAGGTCATGGCCTCAGCTGCTACAGAAGCAGCAGCAGCAGCGTTAACCTCATCGCCAAAGCCAAAGAACACCAGTGAGACCCCAATTACTGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTCCAACTGAAATACCTTCATCGAAGGAAGATGTGGATGCAGCCAGCACTGCTGGGCTGAGTCTTGTCTATGGTCCTACTACAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

110

Amino Acids

11.47

Weight (kDa)

5.3

Isoelectric Point (pI)

67.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 318
AluBI AGCT 3 cut(s) 21, 80, 162
AluI AGCT 3 cut(s) 21, 80, 162
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 7 cut(s) 80, 92, 95, 98, 101, 162, 248
ApoI RAATTY 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 168
AvaII GGWCC 1 cut(s) 281
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 7 cut(s) 67, 104, 107, 110, 113, 149, 260
BccI CCATC 2 cut(s) 69, 182
BcoDI GTCTC 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 7 cut(s) 81, 93, 96, 99, 102, 163, 249
BlsI GCNGC 7 cut(s) 82, 94, 97, 100, 103, 164, 250
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BmsI GCATC 1 cut(s) 235
Bpu10I CCTNAGC 2 cut(s) 22, 76
BsaI GGTCTC 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 135, 176
BseGI GGATG 1 cut(s) 250
BseMII CTCAG 3 cut(s) 36, 90, 257
BseNI ACTGG 2 cut(s) 135, 176
BseXI GCAGC 7 cut(s) 67, 104, 107, 110, 113, 149, 260
BseYI CCCAGC 2 cut(s) 38, 260
BshFI GGCC 1 cut(s) 74
BslFI GGGAC 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 134
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 3 cut(s) 35, 89, 258
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 2 cut(s) 135, 176
Bst4CI ACNGT 2 cut(s) 154, 309
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 22, 76, 266
BstEII GGTNACC 1 cut(s) 174
BstF5I GGATG 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 134
BstMWI GCNNNNNNNGC 5 cut(s) 80, 89, 98, 101, 257
BstPI GGTNACC 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 7 cut(s) 67, 104, 107, 110, 113, 149, 260
BstXI CCANNNNNNTGG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 3 cut(s) 142, 255, 305
Cac8I GCNNGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 281
CviAII CATG 1 cut(s) 70
CviJI RGCY 8 cut(s) 21, 42, 74, 80, 124, 162, 251, 265
CviKI_1 RGCY 8 cut(s) 21, 42, 74, 80, 124, 162, 251, 265
DdeI CTNAG 3 cut(s) 22, 76, 266
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 281
Eco91I GGTNACC 1 cut(s) 174
EcoO65I GGTNACC 1 cut(s) 174
FaeI CATG 1 cut(s) 73
FaiI YATR 2 cut(s) 71, 279
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 69
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 7 cut(s) 81, 93, 96, 99, 102, 163, 249
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 7 cut(s) 81, 93, 96, 99, 102, 163, 249
GluI GCNGC 7 cut(s) 81, 93, 96, 99, 102, 163, 249
GsaI CCCAGC 2 cut(s) 42, 264
HaeIII GGCC 1 cut(s) 74
Hin1II CATG 1 cut(s) 73
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 1 cut(s) 268
HpaI GTTAAC 1 cut(s) 108
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 2 cut(s) 12, 108
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 2 cut(s) 12, 108
HpyAV CCTTC 3 cut(s) 226, 234, 288
HpyCH4III ACNGT 2 cut(s) 154, 309
HpyCH4V TGCA 3 cut(s) 6, 165, 248
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 89, 98, 101, 257
HpyF3I CTNAG 3 cut(s) 22, 76, 266
Hsp92II CATG 1 cut(s) 73
KspAI GTTAAC 1 cut(s) 108
LpnPI CCDG 7 cut(s) 9, 50, 52, 148, 157, 246, 265
Lsp1109I GCAGC 7 cut(s) 67, 104, 107, 110, 113, 149, 260
LweI GCATC 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 174
MboII GAAGA 1 cut(s) 248
MluCI AATT 2 cut(s) 147, 318
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 85, 121, 190, 219
MseI TTAA 1 cut(s) 107
MspA1I CMGCKG 2 cut(s) 80, 162
MwoI GCNNNNNNNGC 5 cut(s) 80, 89, 98, 101, 257
NlaIII CATG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 174
PkrI GCNGC 7 cut(s) 82, 94, 97, 100, 103, 164, 250
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PspEI GGTNACC 1 cut(s) 174
PspFI CCCAGC 2 cut(s) 38, 260
PspPI GGNCC 1 cut(s) 281
PvuII CAGCTG 2 cut(s) 80, 162
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 7 cut(s) 81, 93, 96, 99, 102, 163, 249
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 1 cut(s) 277
SetI ASST 7 cut(s) 23, 69, 82, 113, 164, 201, 226
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 281
Sse9I AATT 2 cut(s) 147, 318
TaaI ACNGT 2 cut(s) 154, 309
TaqI TCGA 1 cut(s) 230
TasI AATT 2 cut(s) 147, 318
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 3 cut(s) 142, 262, 312
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 7 cut(s) 80, 92, 95, 98, 101, 162, 248
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 1 cut(s) 216
TspRI CASTG 3 cut(s) 142, 262, 312
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.