Prupe.1G559900_v2.0.a1

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000708
Physical Location & Seq
Forward (+)
45707272 .. 45711311
4040 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G559900.2

Sequence Viewer

Length: 828 bp
ATGGAAGGTTTTCACAGCAACTCGAAAATGGCGAAACTGCTAAAAGGAAACTTGGAGAATGTGGACCTCAACTCGCCATTGTTCAGGTACTTGTGCGCTCAATCTCAGAGTCAGTCGCCGATGGACGCCTTGAAGCAGCGTCGTCGCCACCTCTCGCCGCTCTCGCCGCTCTCGCCTTTGGAGAATCTGATGGAGAGGTCGCCGCCTTCGATAGTTTATAGAACGCCGGTGAGAGGGGTGCAGAGGGAGGAGGTTCTGGTCATGGACGGTGTTTTAGTCACCGGAGGAGGAAGGAGCTCAAGGTCTGCTTCTGATCTGTCGTCATCTTCTTCTTCTTCGGATTCTTCGGGGAATATTCTGTACAAGACCGACCTTTGCAGGTCCTGGGAGGATTCTGGAAGCTGCCGCTACACCTCCAAAGGCCAGATTGCACCAGGAAAAGAAAAGCCACGCCCAACTCGTTTCCCTGTCAAGAACAAATCTGAGACACTGATGTGCAAGTCATACACTGGCACAAGATTATGCACACCCAGCCCAAAGTCTAATTTTGTCCATCCGGTCATGGCCATTTCTGTTACAGAAGCAGCATCAGCCACAACACAAGCAGCTTCGTCGACTGCACCCAAAGCCACCATGAAGACTCCCACTACTACCATCAGCTTCCTGGACTGGTCACCTCAAGATGATGGCATTGAGGTTGTGTTGCCGTATTCTTCAACTGGAACACCTCCATCAAGGGAAGATATAAGTTCCTACATCACTGATGTTCTTTGTGGCCCCACTACAAGAAGGATATTACCAGTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

276

Amino Acids

29.9

Weight (kDa)

8.95

Isoelectric Point (pI)

72.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 369
AccBSI CCGCTC 2 cut(s) 160, 169
AccI GTMKAC 1 cut(s) 614
AciI CCGC 4 cut(s) 158, 167, 203, 406
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 1 cut(s) 813
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 2 cut(s) 89, 362
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 2 cut(s) 133, 717
AjnI CCWGG 3 cut(s) 383, 433, 663
AleI CACNNNNGTG 1 cut(s) 493
AluBI AGCT 4 cut(s) 297, 402, 608, 660
AluI AGCT 4 cut(s) 297, 402, 608, 660
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 384
AoxI GGCC 3 cut(s) 421, 564, 775
ApeKI GCWGC 4 cut(s) 136, 402, 584, 605
ApoI RAATTY 1 cut(s) 813
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 64, 381, 776
AsuHPI GGTGA 3 cut(s) 241, 271, 666
AvaII GGWCC 2 cut(s) 64, 381
BalI TGGCCA 1 cut(s) 566
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 4 cut(s) 148, 389, 596, 617
BccI CCATC 6 cut(s) 115, 184, 561, 662, 680, 739
BceAI ACGGC 1 cut(s) 691
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 594, 628
BciT130I CCWGG 3 cut(s) 385, 435, 665
BcoDI GTCTC 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 369
BisI GCNGC 8 cut(s) 137, 158, 167, 203, 403, 406, 585, 606
BlsI GCNGC 8 cut(s) 138, 159, 168, 204, 404, 407, 586, 607
Bme1390I CCNGG 3 cut(s) 385, 435, 665
Bme18I GGWCC 2 cut(s) 64, 381
BmgT120I GGNCC 3 cut(s) 64, 381, 776
BmiI GGNNCC 1 cut(s) 778
BmrFI CCNGG 3 cut(s) 385, 435, 665
BmsI GCATC 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 644
BpuEI CTTGAG 2 cut(s) 283, 663
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 2 cut(s) 281, 556
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 4 cut(s) 514, 674, 724, 800
BseBI CCWGG 3 cut(s) 385, 435, 665
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 1 cut(s) 553
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 119, 474
BseNI ACTGG 4 cut(s) 514, 674, 724, 800
BseRI GAGGAG 2 cut(s) 263, 300
BseXI GCAGC 4 cut(s) 148, 389, 596, 617
BseYI CCCAGC 1 cut(s) 530
BsgI GTGCAG 2 cut(s) 260, 603
BshFI GGCC 3 cut(s) 423, 566, 777
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 3 cut(s) 227, 282, 557
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 479
BsnI GGCC 3 cut(s) 423, 566, 777
Bsp1286I GDGCHC 1 cut(s) 299
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 4 cut(s) 158, 167, 203, 406
BspANI GGCC 3 cut(s) 423, 566, 777
BspCNI CTCAG 2 cut(s) 118, 475
BspLI GGNNCC 1 cut(s) 778
BspMI ACCTGC 1 cut(s) 369
BsrBI CCGCTC 2 cut(s) 160, 169
BsrFI RCCGGY 1 cut(s) 226
BsrGI TGTACA 1 cut(s) 360
BsrI ACTGG 4 cut(s) 514, 674, 724, 800
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 3 cut(s) 385, 435, 665
Bst4CI ACNGT 1 cut(s) 269
BstACI GRCGYC 1 cut(s) 126
BstAUI TGTACA 1 cut(s) 360
BstDEI CTNAG 2 cut(s) 105, 483
BstEII GGTNACC 1 cut(s) 672
BstF5I GGATG 1 cut(s) 553
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 6 cut(s) 163, 166, 172, 531, 590, 626
BstNI CCWGG 3 cut(s) 385, 435, 665
BstPI GGTNACC 1 cut(s) 672
BstSCI CCNGG 3 cut(s) 383, 433, 663
BstV1I GCAGC 4 cut(s) 148, 389, 596, 617
BstV2I GAAGAC 1 cut(s) 644
BsuRI GGCC 3 cut(s) 423, 566, 777
BtsCI GGATG 1 cut(s) 553
BtsIMutI CAGTG 4 cut(s) 488, 507, 759, 807
BveI ACCTGC 1 cut(s) 369
CaiI CAGNNNCTG 1 cut(s) 384
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 64, 381, 776
CseI GACGC 2 cut(s) 128, 134
Csp6I GTAC 2 cut(s) 88, 361
CviAII CATG 3 cut(s) 262, 562, 634
CviQI GTAC 2 cut(s) 88, 361
DdeI CTNAG 2 cut(s) 105, 483
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 564
Ecl136II GAGCTC 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 64, 381
Eco53kI GAGCTC 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 672
EcoICRI GAGCTC 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 381
EcoO65I GGTNACC 1 cut(s) 672
EcoRII CCWGG 3 cut(s) 383, 433, 663
EcoT38I GRGCYC 1 cut(s) 299
FaeI CATG 3 cut(s) 265, 565, 637
FaiI YATR 7 cut(s) 219, 263, 505, 523, 563, 635, 746
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FatI CATG 3 cut(s) 261, 561, 633
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 8 cut(s) 137, 158, 167, 203, 403, 406, 585, 606
FokI GGATG 1 cut(s) 540
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 8 cut(s) 137, 158, 167, 203, 403, 406, 585, 606
GlaI GCGC 1 cut(s) 97
GluI GCNGC 8 cut(s) 137, 158, 167, 203, 403, 406, 585, 606
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 3 cut(s) 423, 566, 777
HapII CCGG 3 cut(s) 227, 282, 557
HgaI GACGC 2 cut(s) 128, 134
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 3 cut(s) 265, 565, 637
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 5 cut(s) 109, 184, 341, 392, 640
HpaII CCGG 3 cut(s) 227, 282, 557
HphI GGTGA 3 cut(s) 241, 271, 666
Hpy166II GTNNAC 2 cut(s) 64, 615
Hpy188I TCNGA 5 cut(s) 108, 189, 313, 340, 484
Hpy188III TCNNGA 3 cut(s) 396, 472, 680
Hpy8I GTNNAC 2 cut(s) 64, 615
Hpy99I CGWCG 3 cut(s) 144, 147, 616
HpyAV CCTTC 3 cut(s) 216, 285, 783
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 6 cut(s) 241, 378, 431, 498, 525, 620
HpyF10VI GCNNNNNNNGC 6 cut(s) 163, 166, 172, 531, 590, 626
HpyF3I CTNAG 2 cut(s) 105, 483
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 3 cut(s) 265, 565, 637
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 294
Lsp1109I GCAGC 4 cut(s) 148, 389, 596, 617
LweI GCATC 1 cut(s) 596
MaeIII GTNAC 3 cut(s) 277, 574, 672
MalI GATC 1 cut(s) 315
MbiI CCGCTC 2 cut(s) 160, 169
MboI GATC 1 cut(s) 313
MboII GAAGA 8 cut(s) 318, 321, 324, 327, 336, 649, 705, 752
MhlI GDGCHC 1 cut(s) 299
MlsI TGGCCA 1 cut(s) 566
MluCI AATT 2 cut(s) 544, 813
MluNI TGGCCA 1 cut(s) 566
MlyI GAGTC 2 cut(s) 118, 634
Mox20I TGGCCA 1 cut(s) 566
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 566
MslI CAYNNNNRTG 1 cut(s) 493
Msp20I TGGCCA 1 cut(s) 566
MspI CCGG 3 cut(s) 227, 282, 557
MspR9I CCNGG 3 cut(s) 385, 435, 665
MvaI CCWGG 3 cut(s) 385, 435, 665
MwoI GCNNNNNNNGC 6 cut(s) 163, 166, 172, 531, 590, 626
NdeII GATC 1 cut(s) 313
NlaIII CATG 3 cut(s) 265, 565, 637
NlaIV GGNNCC 1 cut(s) 778
NmuCI GTSAC 2 cut(s) 277, 672
OliI CACNNNNGTG 1 cut(s) 493
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 206, 457
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 3 cut(s) 184, 341, 392
PfoI TCCNGGA 1 cut(s) 663
PkrI GCNGC 8 cut(s) 138, 159, 168, 204, 404, 407, 586, 607
PleI GAGTC 2 cut(s) 117, 634
PpsI GAGTC 2 cut(s) 117, 634
PpuMI RGGWCCY 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 381
Psp6I CCWGG 3 cut(s) 383, 433, 663
PspEI GGTNACC 1 cut(s) 672
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 3 cut(s) 383, 433, 663
PspN4I GGNNCC 1 cut(s) 778
PspPI GGNCC 3 cut(s) 64, 381, 776
PspPPI RGGWCCY 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 384
RsaI GTAC 2 cut(s) 89, 362
RsaNI GTAC 2 cut(s) 88, 361
RseI CAYNNNNRTG 1 cut(s) 493
SacI GAGCTC 1 cut(s) 299
SalI GTCGAC 1 cut(s) 613
SatI GCNGC 8 cut(s) 137, 158, 167, 203, 403, 406, 585, 606
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 3 cut(s) 64, 381, 776
SchI GAGTC 2 cut(s) 118, 634
ScrFI CCNGG 3 cut(s) 385, 435, 665
SduI GDGCHC 1 cut(s) 299
SfaNI GCATC 1 cut(s) 596
SgrAI CRCCGGYG 1 cut(s) 226
SinI GGWCC 2 cut(s) 64, 381
SmiMI CAYNNNNRTG 1 cut(s) 493
SmlI CTYRAG 2 cut(s) 298, 678
SmoI CTYRAG 2 cut(s) 298, 678
Sse9I AATT 2 cut(s) 544, 813
SsiI CCGC 4 cut(s) 158, 167, 203, 406
SspI AATATT 1 cut(s) 355
SstI GAGCTC 1 cut(s) 299
StyD4I CCNGG 3 cut(s) 383, 433, 663
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 3 cut(s) 23, 209, 614
TaqII GACCGA 1 cut(s) 383
TasI AATT 2 cut(s) 544, 813
TatI WGTACW 1 cut(s) 360
TauI GCSGC 4 cut(s) 160, 169, 205, 408
TfiI GAWTC 3 cut(s) 184, 341, 392
TscAI CASTG 4 cut(s) 495, 514, 766, 807
TseFI GTSAC 2 cut(s) 277, 672
TseI GCWGC 4 cut(s) 136, 402, 584, 605
Tsp45I GTSAC 2 cut(s) 277, 672
TspDTI ATGAA 1 cut(s) 650
TspRI CASTG 4 cut(s) 495, 514, 766, 807
VpaK11BI GGWCC 2 cut(s) 64, 381
XapI RAATTY 1 cut(s) 813
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XmiI GTMKAC 1 cut(s) 614
XmnI GAANNNNTTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.