Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Reverse (-)

21075615 .. 21075986

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27415.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAGAACCTTCACGGCAACTTAGGGGTTCCAAAATTGAGCCCGCAACACTTGATCAAACGAGGAAGCTTCGAGAAGGAGGACGCGATTGACTCGCCGCTCCTCAGGTACCTCCAAGAAGGCTCTCAGTCGCCGGTTGACGGATTCAAGCAGTGGTGCCACCCGCTCTCGTCGGTAGAGAATCTAATGGCGGCGGCGGCGAGGTCTTCATCGGTGAGAGCGGTACCGAGGGAGGAGGTTCTGGTGATGGACGGCGTTTTGATCTCGACTAAAGGAAAGAGGAGGTCTAGTGGTTCTTCTGGTTCGCCTCCATCTGGTGCTTCAGATTCTTCCAAGAAGAGTCTCTCTAAAGCCACAAAGGCCAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

124

Amino Acids

13.13

Weight (kDa)

9.77

Isoelectric Point (pI)

74.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	108, 223
AccB1I	GGYRCC	3 cut(s)	108, 156, 223
AccBSI	CCGCTC	3 cut(s)	100, 166, 221
AccII	CGCG	1 cut(s)	86
AciI	CCGC	7 cut(s)	44, 98, 164, 191, 194, 197, 221
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	110, 225
AfiI	CCNNNNNNNGG	2 cut(s)	140, 314
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	347
AoxI	GGCC	1 cut(s)	360
Asp718I	GGTACC	2 cut(s)	108, 223
AsuHPI	GGTGA	2 cut(s)	226, 256
AxyI	CCTNAGG	1 cut(s)	104
BanI	GGYRCC	3 cut(s)	108, 156, 223
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	198
BccI	CCATC	2 cut(s)	241, 319
BceAI	ACGGC	2 cut(s)	31, 268
BciT130I	CCWGG	1 cut(s)	364
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	359
BisI	GCNGC	4 cut(s)	98, 192, 195, 198
BlsI	GCNGC	4 cut(s)	99, 193, 196, 199
Bme1390I	CCNGG	1 cut(s)	364
BmiI	GGNNCC	4 cut(s)	30, 110, 158, 225
BmrFI	CCNGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 314
Bse118I	RCCGGY	1 cut(s)	133
Bse21I	CCTNAGG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	2 cut(s)	140, 314
BseMII	CTCAG	2 cut(s)	118, 140
BseRI	GAGGAG	3 cut(s)	92, 248, 295
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	3 cut(s)	108, 156, 223
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	140, 314
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	54, 261
BspACI	CCGC	7 cut(s)	44, 98, 164, 191, 194, 197, 221
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	2 cut(s)	117, 139
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	4 cut(s)	30, 110, 158, 225
BspT107I	GGYRCC	3 cut(s)	108, 156, 223
BsrBI	CCGCTC	3 cut(s)	100, 166, 221
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	2 cut(s)	54, 261
Bst2UI	CCWGG	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	22, 104, 126
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	57, 264
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	54, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 359
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	362
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	133
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	109, 224
CviJI	RGCY	5 cut(s)	42, 69, 123, 353, 362
CviKI_1	RGCY	5 cut(s)	42, 69, 123, 353, 362
CviQI	GTAC	2 cut(s)	109, 224
DdeI	CTNAG	3 cut(s)	22, 104, 126
DpnI	GATC	2 cut(s)	56, 263
DpnII	GATC	2 cut(s)	54, 261
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	44
FauI	CCCGC	2 cut(s)	51, 171
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	98, 192, 195, 198
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	98, 192, 195, 198
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	4 cut(s)	98, 192, 195, 198
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	5 cut(s)	92, 144, 181, 326, 340
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	2 cut(s)	226, 256
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	2 cut(s)	73, 265
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	20, 70, 113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 359
HpyF3I	CTNAG	3 cut(s)	22, 104, 126
KpnI	GGTACC	2 cut(s)	112, 227
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	54, 261
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	6 cut(s)	91, 147, 227, 285, 300, 349
MaeI	CTAG	1 cut(s)	288
MalI	GATC	2 cut(s)	56, 263
MbiI	CCGCTC	3 cut(s)	100, 166, 221
MboI	GATC	2 cut(s)	54, 261
MboII	GAAGA	4 cut(s)	198, 288, 321, 349
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	86, 349
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	197, 359
NdeII	GATC	2 cut(s)	54, 261
NlaIV	GGNNCC	4 cut(s)	30, 110, 158, 225
PfeI	GAWTC	3 cut(s)	144, 181, 326
PkrI	GCNGC	4 cut(s)	99, 193, 196, 199
PleI	GAGTC	2 cut(s)	86, 348
PpsI	GAGTC	2 cut(s)	86, 348
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	4 cut(s)	30, 110, 158, 225
RsaI	GTAC	2 cut(s)	110, 225
RsaNI	GTAC	2 cut(s)	109, 224
SatI	GCNGC	4 cut(s)	98, 192, 195, 198
Sau3AI	GATC	2 cut(s)	54, 261
SchI	GAGTC	2 cut(s)	86, 349
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	7 cut(s)	12, 71, 110, 114, 206, 240, 287
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	7 cut(s)	44, 98, 164, 191, 194, 197, 221
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	362
TaqI	TCGA	2 cut(s)	72, 266
TasI	AATT	1 cut(s)	35
TauI	GCSGC	4 cut(s)	100, 194, 197, 200
TfiI	GAWTC	3 cut(s)	144, 181, 326
TscAI	CASTG	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	158
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.