Rmu_ssc0000372.1_g000049

CRS2-associated factor 1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000372.1
Physical Location & Seq
Forward (+)
174875 .. 177419
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000372.1_g000049.1.cds

Sequence Viewer

Length: 1050 bp
atggaggctgggcgtgtgtacggatcggtgcgatcggccgttgggatcggtgctgcagggaccggtgctgcagatgaggctcctgtttgtacgggaagatgcagggctcggtttgtgcggtcagatgcagggttcggtctgaccggccgtggaactttgctgcaggctggagtccgcaaagtagcaggtggacgagtgcggggatgggttgcagtgtgttcgctaaaggaagatgggtgcagagtgcaaattgctctgagctgggtgcgaagagcaaattgctcttggctgggatcgatgaggtgggcacggccgcacggggatgctactattgcaggcgttggactgttgggggatgcattgccgcgttcaggtgggttgaggtggaggcccgtgtgctgggctaggcactgtggtgcttggctggttttttctttctcgcgcttccctgaaaccctagcgctctcctccttcctgtcctgctctctttccacagctgctgtctctccctcattgaactactgcctccgtcccctcacaggcgctatcgcctccgcctgtgcttctcatccaacgccaccacgttgttgctccgagatccgaaccctaactggtccaatcagtctccaaggagtctatcctcctcgattggtgcgacttcaagcaccaaatgctagcgatggaggaactgaacacaaccgcaatgacgatggtgcgaccggcatcagattccgggttcttcttgctctctctccatctctacccatctttcttctgcataaagataaaatcgcagaattgcagcagccatggccaccacgccgcccttggatcctccgaagatcgactcagaagccgctgacacgaagccaaaacctaaccctaatccttcaaattttggtggagaaatgtcagagagggaaaaccaataagcaaatcaatttggggagagatggtttgactcacaatatgctgaatgatattcataaccattggaaacatgaagaagcagtgaggataaaatgtaaaggtgtccaactgttgacatga

Protein Analysis

349

Amino Acids

37.97

Weight (kDa)

10.47

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 176
AccII CGCG 2 cut(s) 367, 442
AciI CCGC 9 cut(s) 118, 175, 199, 314, 365, 555, 700, 823, 857
AclWI GGATC 6 cut(s) 31, 53, 301, 592, 826, 839
AcoI YGGCCR 4 cut(s) 36, 145, 311, 812
AcsI RAATTY 1 cut(s) 894
AfaI GTAC 2 cut(s) 20, 91
AfeI AGCGCT 1 cut(s) 462
AfiI CCNNNNNNNGG 3 cut(s) 371, 399, 539
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 3 cut(s) 517, 662, 893
AleI CACNNNNGTG 1 cut(s) 414
AluBI AGCT 2 cut(s) 261, 497
AluI AGCT 2 cut(s) 261, 497
Alw26I GTCTC 2 cut(s) 508, 629
AlwI GGATC 6 cut(s) 31, 53, 301, 592, 826, 839
AlwNI CAGNNNCTG 1 cut(s) 500
Aor51HI AGCGCT 1 cut(s) 462
AoxI GGCC 5 cut(s) 36, 145, 311, 389, 812
ApeKI GCWGC 6 cut(s) 53, 68, 160, 497, 802, 805
ApoI RAATTY 1 cut(s) 894
AsiGI ACCGGT 1 cut(s) 62
AspLEI GCGC 3 cut(s) 444, 463, 545
AspS9I GGNCC 3 cut(s) 60, 390, 614
AsuC2I CCSGG 1 cut(s) 734
AsuNHI GCTAGC 1 cut(s) 674
AvaII GGWCC 2 cut(s) 60, 614
BaeGI GKGCMC 1 cut(s) 310
BalI TGGCCA 1 cut(s) 814
BamHI GGATCC 1 cut(s) 831
BanII GRGCYC 1 cut(s) 109
BbvI GCAGC 6 cut(s) 40, 55, 147, 484, 814, 817
BccI CCATC 7 cut(s) 198, 227, 674, 704, 763, 773, 947
BceAI ACGGC 3 cut(s) 23, 132, 326
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BcnI CCSGG 1 cut(s) 734
BcoDI GTCTC 2 cut(s) 508, 629
BfaI CTAG 3 cut(s) 405, 458, 675
BfmI CTRYAG 3 cut(s) 54, 69, 161
BfoI RGCGCY 2 cut(s) 464, 546
BfuAI ACCTGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 734
Bme18I GGWCC 2 cut(s) 60, 614
BmgT120I GGNCC 3 cut(s) 60, 390, 614
BmiI GGNNCC 3 cut(s) 61, 81, 833
BmrFI CCNGG 1 cut(s) 734
BmsI GCATC 5 cut(s) 89, 115, 313, 346, 732
BmtI GCTAGC 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 734
Bsa29I ATCGAT 1 cut(s) 296
BsaJI CCNNGG 4 cut(s) 148, 628, 809, 827
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 940, 970
Bsc4I CCNNNNNNNGG 3 cut(s) 371, 399, 539
Bse118I RCCGGY 3 cut(s) 62, 143, 719
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 2 cut(s) 359, 709
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 4 cut(s) 148, 628, 809, 827
BseGI GGATG 4 cut(s) 209, 328, 361, 568
BseLI CCNNNNNNNGG 3 cut(s) 371, 399, 539
BseMI GCAATG 2 cut(s) 359, 709
BseMII CTCAG 2 cut(s) 248, 863
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 2 cut(s) 457, 633
BseSI GKGCMC 1 cut(s) 310
BseX3I CGGCCG 3 cut(s) 36, 145, 311
BseXI GCAGC 6 cut(s) 40, 55, 147, 484, 814, 817
BseYI CCCAGC 4 cut(s) 8, 261, 289, 399
BsgI GTGCAG 1 cut(s) 259
Bsh1236I CGCG 2 cut(s) 367, 442
Bsh1285I CGRYCG 5 cut(s) 35, 39, 148, 314, 720
BshFI GGCC 5 cut(s) 38, 147, 313, 391, 814
BshTI ACCGGT 1 cut(s) 62
BshVI ATCGAT 1 cut(s) 296
BsiEI CGRYCG 5 cut(s) 35, 39, 148, 314, 720
BsiSI CCGG 4 cut(s) 63, 144, 720, 733
BslFI GGGAC 2 cut(s) 73, 516
BslI CCNNNNNNNGG 3 cut(s) 371, 399, 539
BsmAI GTCTC 2 cut(s) 508, 629
BsmFI GGGAC 2 cut(s) 73, 516
BsnI GGCC 5 cut(s) 38, 147, 313, 391, 814
Bsp1286I GDGCHC 2 cut(s) 109, 310
Bsp143I GATC 7 cut(s) 23, 32, 45, 293, 597, 831, 842
Bsp19I CCATGG 1 cut(s) 809
BspACI CCGC 9 cut(s) 118, 175, 199, 314, 365, 555, 700, 823, 857
BspANI GGCC 5 cut(s) 38, 147, 313, 391, 814
BspCNI CTCAG 2 cut(s) 249, 862
BspDI ATCGAT 1 cut(s) 296
BspFNI CGCG 2 cut(s) 367, 442
BspLI GGNNCC 3 cut(s) 61, 81, 833
BspMAI CTGCAG 3 cut(s) 58, 73, 165
BspMI ACCTGC 1 cut(s) 176
BspOI GCTAGC 1 cut(s) 678
BspPI GGATC 6 cut(s) 31, 53, 301, 592, 826, 839
BspQI GCTCTTC 1 cut(s) 265
BsrDI GCAATG 2 cut(s) 359, 709
BsrFI RCCGGY 3 cut(s) 62, 143, 719
BsrI ACTGG 1 cut(s) 616
BssAI RCCGGY 3 cut(s) 62, 143, 719
BssECI CCNNGG 4 cut(s) 148, 628, 809, 827
BssMI GATC 7 cut(s) 23, 32, 45, 293, 597, 831, 842
BssT1I CCWWGG 3 cut(s) 628, 809, 827
Bst4CI ACNGT 3 cut(s) 348, 413, 1041
Bst6I CTCTTC 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 671
BstC8I GCNNGC 3 cut(s) 165, 337, 676
BstDEI CTNAG 2 cut(s) 257, 849
BstDSI CCRYGG 2 cut(s) 148, 809
BstF5I GGATG 4 cut(s) 209, 328, 361, 568
BstFNI CGCG 2 cut(s) 367, 442
BstH2I RGCGCY 2 cut(s) 464, 546
BstHHI GCGC 3 cut(s) 444, 463, 545
BstKTI GATC 7 cut(s) 26, 35, 48, 296, 600, 834, 845
BstMAI GTCTC 2 cut(s) 508, 629
BstMBI GATC 7 cut(s) 23, 32, 45, 293, 597, 831, 842
BstMCI CGRYCG 5 cut(s) 35, 39, 148, 314, 720
BstMWI GCNNNNNNNGC 4 cut(s) 77, 332, 671, 811
BstSCI CCNGG 1 cut(s) 732
BstSFI CTRYAG 3 cut(s) 54, 69, 161
BstSLI GKGCMC 1 cut(s) 310
BstUI CGCG 2 cut(s) 367, 442
BstV1I GCAGC 6 cut(s) 40, 55, 147, 484, 814, 817
BstX2I RGATCY 2 cut(s) 597, 831
BstYI RGATCY 2 cut(s) 597, 831
BstZI CGGCCG 3 cut(s) 36, 145, 311
Bsu15I ATCGAT 1 cut(s) 296
BsuRI GGCC 5 cut(s) 38, 147, 313, 391, 814
BsuTUI ATCGAT 1 cut(s) 296
BtgI CCRYGG 2 cut(s) 148, 809
BtgZI GCGATG 1 cut(s) 693
BtsCI GGATG 4 cut(s) 209, 328, 361, 568
BtsI GCAGTG 2 cut(s) 219, 1017
BtsIMutI CAGTG 3 cut(s) 219, 409, 1017
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 3 cut(s) 165, 337, 676
CaiI CAGNNNCTG 1 cut(s) 500
CfoI GCGC 3 cut(s) 444, 463, 545
Cfr10I RCCGGY 3 cut(s) 62, 143, 719
Cfr13I GGNCC 3 cut(s) 60, 390, 614
ClaI ATCGAT 1 cut(s) 296
Csp6I GTAC 2 cut(s) 19, 90
CspAI ACCGGT 1 cut(s) 62
CviAII CATG 3 cut(s) 810, 1001, 1047
CviQI GTAC 2 cut(s) 19, 90
DdeI CTNAG 2 cut(s) 257, 849
DpnI GATC 7 cut(s) 25, 34, 47, 295, 599, 833, 844
DpnII GATC 7 cut(s) 23, 32, 45, 293, 597, 831, 842
EaeI YGGCCR 4 cut(s) 36, 145, 311, 812
EagI CGGCCG 3 cut(s) 36, 145, 311
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
EciI GGCGGA 1 cut(s) 544
EclXI CGGCCG 3 cut(s) 36, 145, 311
Eco130I CCWWGG 3 cut(s) 628, 809, 827
Eco24I GRGCYC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 60, 614
Eco47III AGCGCT 1 cut(s) 462
Eco52I CGGCCG 3 cut(s) 36, 145, 311
EcoT14I CCWWGG 3 cut(s) 628, 809, 827
EcoT22I ATGCAT 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 3 cut(s) 628, 809, 827
FaeI CATG 3 cut(s) 813, 1004, 1050
FaiI YATR 6 cut(s) 780, 811, 971, 987, 1002, 1048
FaqI GGGAC 2 cut(s) 73, 516
FatI CATG 3 cut(s) 809, 1000, 1046
FauI CCCGC 1 cut(s) 192
FokI GGATG 4 cut(s) 216, 335, 368, 555
FriOI GRGCYC 1 cut(s) 109
FspBI CTAG 3 cut(s) 405, 458, 675
GlaI GCGC 3 cut(s) 443, 462, 544
GsaI CCCAGC 4 cut(s) 12, 265, 293, 403
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 2 cut(s) 464, 546
HaeIII GGCC 5 cut(s) 38, 147, 313, 391, 814
HapII CCGG 4 cut(s) 63, 144, 720, 733
HhaI GCGC 3 cut(s) 444, 463, 545
Hin1II CATG 3 cut(s) 813, 1004, 1050
Hin6I GCGC 3 cut(s) 442, 461, 543
HinP1I GCGC 3 cut(s) 442, 461, 543
HincII GTYRAC 1 cut(s) 1044
HindII GTYRAC 1 cut(s) 1044
HinfI GANTC 5 cut(s) 171, 633, 729, 847, 961
HpaII CCGG 4 cut(s) 63, 144, 720, 733
Hpy166II GTNNAC 3 cut(s) 19, 191, 1044
Hpy188I TCNGA 9 cut(s) 124, 141, 258, 595, 602, 728, 839, 852, 915
Hpy8I GTNNAC 3 cut(s) 19, 191, 1044
HpyAV CCTTC 2 cut(s) 481, 899
HpyCH4III ACNGT 3 cut(s) 348, 413, 1041
HpyCH4IV ACGT 1 cut(s) 583
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 332, 671, 811
HpyF3I CTNAG 2 cut(s) 257, 849
HpySE526I ACGT 1 cut(s) 583
Hsp92II CATG 3 cut(s) 813, 1004, 1050
HspAI GCGC 3 cut(s) 442, 461, 543
Kzo9I GATC 7 cut(s) 23, 32, 45, 293, 597, 831, 842
LguI GCTCTTC 1 cut(s) 265
LmnI GCTCC 2 cut(s) 85, 596
Lsp1109I GCAGC 6 cut(s) 40, 55, 147, 484, 814, 817
LweI GCATC 5 cut(s) 89, 115, 313, 346, 732
MaeI CTAG 3 cut(s) 405, 458, 675
MaeII ACGT 1 cut(s) 583
MalI GATC 7 cut(s) 25, 34, 47, 295, 599, 833, 844
MboI GATC 7 cut(s) 23, 32, 45, 293, 597, 831, 842
MboII GAAGA 7 cut(s) 108, 242, 282, 731, 764, 852, 1016
MflI RGATCY 2 cut(s) 597, 831
MhlI GDGCHC 2 cut(s) 109, 310
MlsI TGGCCA 1 cut(s) 814
MluCI AATT 5 cut(s) 249, 277, 797, 894, 940
MluNI TGGCCA 1 cut(s) 814
MlyI GAGTC 4 cut(s) 180, 642, 841, 955
MmeI TCCRAC 2 cut(s) 322, 596
Mox20I TGGCCA 1 cut(s) 814
Mph1103I ATGCAT 1 cut(s) 361
MscI TGGCCA 1 cut(s) 814
MslI CAYNNNNRTG 2 cut(s) 321, 414
Msp20I TGGCCA 1 cut(s) 814
MspA1I CMGCKG 2 cut(s) 497, 859
MspI CCGG 4 cut(s) 63, 144, 720, 733
MspR9I CCNGG 1 cut(s) 734
MvnI CGCG 2 cut(s) 367, 442
MwoI GCNNNNNNNGC 4 cut(s) 77, 332, 671, 811
NciI CCSGG 1 cut(s) 734
NcoI CCATGG 1 cut(s) 809
NdeII GATC 7 cut(s) 23, 32, 45, 293, 597, 831, 842
NheI GCTAGC 1 cut(s) 674
NlaIII CATG 3 cut(s) 813, 1004, 1050
NlaIV GGNNCC 3 cut(s) 61, 81, 833
NsiI ATGCAT 1 cut(s) 361
OliI CACNNNNGTG 1 cut(s) 414
PaqCI CACCTGC 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 652
PfeI GAWTC 1 cut(s) 729
PinAI ACCGGT 1 cut(s) 62
Ple19I CGATCG 1 cut(s) 35
PleI GAGTC 4 cut(s) 179, 641, 841, 955
PpsI GAGTC 4 cut(s) 179, 641, 841, 955
PspFI CCCAGC 4 cut(s) 8, 261, 289, 399
PspN4I GGNNCC 3 cut(s) 61, 81, 833
PspPI GGNCC 3 cut(s) 60, 390, 614
PstI CTGCAG 3 cut(s) 58, 73, 165
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 2 cut(s) 597, 831
PvuI CGATCG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 20, 91
RsaNI GTAC 2 cut(s) 19, 90
RseI CAYNNNNRTG 2 cut(s) 321, 414
SapI GCTCTTC 1 cut(s) 265
Sau3AI GATC 7 cut(s) 23, 32, 45, 293, 597, 831, 842
Sau96I GGNCC 3 cut(s) 60, 390, 614
SchI GAGTC 4 cut(s) 180, 642, 841, 955
ScrFI CCNGG 1 cut(s) 734
SduI GDGCHC 2 cut(s) 109, 310
SetI ASST 9 cut(s) 190, 263, 305, 376, 386, 499, 586, 879, 1033
SfaNI GCATC 5 cut(s) 89, 115, 313, 346, 732
SfcI CTRYAG 3 cut(s) 54, 69, 161
SinI GGWCC 2 cut(s) 60, 614
SmiMI CAYNNNNRTG 2 cut(s) 321, 414
Sse9I AATT 5 cut(s) 249, 277, 797, 894, 940
SsiI CCGC 9 cut(s) 118, 175, 199, 314, 365, 555, 700, 823, 857
SspMI CTAG 3 cut(s) 405, 458, 675
StyD4I CCNGG 1 cut(s) 732
StyI CCWWGG 3 cut(s) 628, 809, 827
TaaI ACNGT 3 cut(s) 348, 413, 1041
TaiI ACGT 1 cut(s) 586
TaqI TCGA 3 cut(s) 296, 646, 845
TaqII GACCGA 1 cut(s) 125
TasI AATT 5 cut(s) 249, 277, 797, 894, 940
TauI GCSGC 4 cut(s) 316, 367, 825, 859
TfiI GAWTC 1 cut(s) 729
TscAI CASTG 3 cut(s) 219, 416, 1017
TseI GCWGC 6 cut(s) 53, 68, 160, 497, 802, 805
TspDTI ATGAA 2 cut(s) 974, 1017
TspGWI ACGGA 2 cut(s) 36, 518
TspRI CASTG 3 cut(s) 219, 416, 1017
VpaK11BI GGWCC 2 cut(s) 60, 614
XapI RAATTY 1 cut(s) 894
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XspI CTAG 3 cut(s) 405, 458, 675
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.