Rh7AG449600

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000708
Physical Location & Seq
Reverse (-)
61461260 .. 61463816
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG449600.1

Sequence Viewer

Length: 552 bp
ATGGAACAACACTTGCGAGGTTCTCAGTCGCCGATCAACGTCTTCAAGTACCGCCGTCGTCAACTGTCGCCGCTCGCGCCTCTGCAGAATTTGATCGCGCCGCAGACGGAGGACGGCGTTTCGGTTGCCGGAAGCTACGGCTCCAAAGGCCAGTCTGTATATGGAAAAGAAAATCTGCATCCAACTTCTTTTCCTGCCAAGAACAAATCCGAGGCACAGATGTGCGAGGCTACAAGTAGCTCAGGATTATGCACCCCCAGCCTGAAGTCCCACTTTGCCTATCAGGTCATGGCATCCAGAGAAGCAGCAGCAGTAGCAGCATTAGCCTCATCACCAAAGCCAAATAACACCATTGAGACCCCGATTACTCTCATCAGCTATGAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTTCAACTGAAATACCTTCATCGAAGGAAGATGTGGATGCATCCGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCTACTAGAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

183

Amino Acids

19.77

Weight (kDa)

5.95

Isoelectric Point (pI)

74.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 73
AccII CGCG 2 cut(s) 77, 98
AciI CCGC 3 cut(s) 52, 71, 101
AcsI RAATTY 2 cut(s) 88, 537
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 2 cut(s) 46, 429
AleI CACNNNNGTG 1 cut(s) 220
AluBI AGCT 3 cut(s) 135, 240, 378
AluI AGCT 3 cut(s) 135, 240, 378
Alw26I GTCTC 1 cut(s) 350
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 3 cut(s) 305, 308, 317
ApoI RAATTY 2 cut(s) 88, 537
AspLEI GCGC 2 cut(s) 79, 100
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 2 cut(s) 324, 384
AvaII GGWCC 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 317, 320, 329
BccI CCATC 1 cut(s) 398
BceAI ACGGC 3 cut(s) 39, 130, 154
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 5 cut(s) 71, 101, 306, 309, 318
BlsI GCNGC 5 cut(s) 72, 102, 307, 310, 319
Bme18I GGWCC 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 1 cut(s) 142
BmsI GCATC 4 cut(s) 187, 302, 451, 473
BpiI GAAGAC 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 151, 392
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 4 cut(s) 178, 293, 464, 466
BseMII CTCAG 3 cut(s) 38, 255, 473
BseNI ACTGG 2 cut(s) 151, 392
BseXI GCAGC 3 cut(s) 317, 320, 329
BseYI CCCAGC 1 cut(s) 257
Bsh1236I CGCG 2 cut(s) 77, 98
BshFI GGCC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 129, 468
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 33, 93
BspACI CCGC 3 cut(s) 52, 71, 101
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 3 cut(s) 37, 254, 474
BspFNI CGCG 2 cut(s) 77, 98
BspLI GGNNCC 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 73
BsrI ACTGG 2 cut(s) 151, 392
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 33, 93
Bst4CI ACNGT 2 cut(s) 66, 528
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 24, 241, 482
BstEII GGTNACC 1 cut(s) 390
BstF5I GGATG 4 cut(s) 178, 293, 464, 466
BstFNI CGCG 2 cut(s) 77, 98
BstHHI GCGC 2 cut(s) 79, 100
BstKTI GATC 2 cut(s) 36, 96
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 2 cut(s) 33, 93
BstMWI GCNNNNNNNGC 6 cut(s) 76, 147, 258, 314, 317, 323
BstPI GGTNACC 1 cut(s) 390
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 2 cut(s) 77, 98
BstV1I GCAGC 3 cut(s) 317, 320, 329
BstV2I GAAGAC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 404
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 4 cut(s) 178, 293, 464, 466
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 2 cut(s) 471, 524
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 2 cut(s) 79, 100
Cfr13I GGNCC 1 cut(s) 497
Csp6I GTAC 1 cut(s) 49
CviAII CATG 1 cut(s) 289
CviJI RGCY 9 cut(s) 135, 141, 150, 230, 240, 261, 326, 340, 378
CviKI_1 RGCY 9 cut(s) 135, 141, 150, 230, 240, 261, 326, 340, 378
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 24, 241, 482
DpnI GATC 2 cut(s) 35, 95
DpnII GATC 2 cut(s) 33, 93
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 390
EcoO65I GGTNACC 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 466
FaeI CATG 1 cut(s) 292
FaiI YATR 6 cut(s) 160, 162, 250, 290, 381, 495
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 1 cut(s) 253
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 71, 101, 306, 309, 318
FokI GGATG 4 cut(s) 165, 280, 451, 473
Fsp4HI GCNGC 5 cut(s) 71, 101, 306, 309, 318
FspBI CTAG 1 cut(s) 507
GlaI GCGC 2 cut(s) 78, 99
GluI GCNGC 5 cut(s) 71, 101, 306, 309, 318
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 129, 468
HhaI GCGC 2 cut(s) 79, 100
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 2 cut(s) 77, 98
HinP1I GCGC 2 cut(s) 77, 98
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HinfI GANTC 1 cut(s) 484
HpaII CCGG 2 cut(s) 129, 468
HphI GGTGA 2 cut(s) 324, 384
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 243, 297
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 5 cut(s) 435, 442, 450, 507, 510
HpyCH4III ACNGT 2 cut(s) 66, 528
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 4 cut(s) 85, 178, 252, 464
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 147, 258, 314, 317, 323
HpyF3I CTNAG 3 cut(s) 24, 241, 482
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 2 cut(s) 77, 98
Kzo9I GATC 2 cut(s) 33, 93
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 3 cut(s) 317, 320, 329
LweI GCATC 4 cut(s) 187, 302, 451, 473
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 390
MalI GATC 2 cut(s) 35, 95
MbiI CCGCTC 1 cut(s) 73
MboI GATC 2 cut(s) 33, 93
MboII GAAGA 3 cut(s) 34, 464, 522
MluCI AATT 2 cut(s) 88, 537
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 8 cut(s) 11, 90, 103, 205, 220, 337, 376, 406
Mph1103I ATGCAT 1 cut(s) 466
MslI CAYNNNNRTG 1 cut(s) 220
MspI CCGG 2 cut(s) 129, 468
MvnI CGCG 2 cut(s) 77, 98
MwoI GCNNNNNNNGC 6 cut(s) 76, 147, 258, 314, 317, 323
NdeII GATC 2 cut(s) 33, 93
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 390
NsiI ATGCAT 1 cut(s) 466
OliI CACNNNNGTG 1 cut(s) 220
PkrI GCNGC 5 cut(s) 72, 102, 307, 310, 319
PleI GAGTC 1 cut(s) 492
PpsI GAGTC 1 cut(s) 492
PspEI GGTNACC 1 cut(s) 390
PspFI CCCAGC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 497
PstI CTGCAG 1 cut(s) 87
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 220
SatI GCNGC 5 cut(s) 71, 101, 306, 309, 318
Sau3AI GATC 2 cut(s) 33, 93
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 1 cut(s) 493
SetI ASST 8 cut(s) 22, 42, 137, 242, 288, 380, 417, 442
SfaNI GCATC 4 cut(s) 187, 302, 451, 473
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 497
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 2 cut(s) 88, 537
SsiI CCGC 3 cut(s) 52, 71, 101
SspMI CTAG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 66, 528
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 446
TasI AATT 2 cut(s) 88, 537
TauI GCSGC 2 cut(s) 73, 103
TscAI CASTG 2 cut(s) 478, 531
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 3 cut(s) 305, 308, 317
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 2 cut(s) 478, 531
VpaK11BI GGWCC 1 cut(s) 497
XapI RAATTY 2 cut(s) 88, 537
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XspI CTAG 1 cut(s) 507
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.