Rh7AG452600

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000708
Physical Location & Seq
Forward (+)
62002286 .. 62004834
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG452600.1

Sequence Viewer

Length: 534 bp
ATGGAGCAACATTTGCGAGGTTCTCAGTCGCCGATCGACGTCTTCAAGTACCGCCGTCGTCAACTGGCGCCTCTGCAGAATCTGATCGCGCCGCAGACGGAGGACGGCGTTTCGGTTGCCGAAAGCTACGGCTCCAAAGCCCAGTTTGAATATGGAAAAGAAAATCTGCATCCAACTTCTTTCCCTGCCAAGAACAAATCCGAGGCACAGATGTGCGAGGCTACAACTAGCTCAGGATTATGCACCCCCAGCCTGAAGTCCCACTTTGCCTATCAGGTCATGGCATCCAGAGAAGCAGCAGCAGTAGCCTCATCGCCAAAGCCAAATAACGCCATTGAGACCCTGATTACTGTCATCAGCTGGAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTTCAACTGAGATACCTTCATCGAAGGAAGATGTGGATGCATCCGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCTACTAGAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

177

Amino Acids

19.4

Weight (kDa)

5.68

Isoelectric Point (pI)

72.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 67
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 52, 92
AcsI RAATTY 1 cut(s) 519
AcuI CTGAAG 1 cut(s) 275
AcyI GRCGYC 2 cut(s) 39, 68
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 3 cut(s) 46, 149, 411
AleI CACNNNNGTG 1 cut(s) 211
AluBI AGCT 3 cut(s) 126, 231, 360
AluI AGCT 3 cut(s) 126, 231, 360
Alw26I GTCTC 1 cut(s) 332
AlwNI CAGNNNCTG 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 296, 299
ApoI RAATTY 1 cut(s) 519
AspLEI GCGC 2 cut(s) 70, 91
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 1 cut(s) 366
AvaII GGWCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 2 cut(s) 308, 311
BccI CCATC 1 cut(s) 380
BceAI ACGGC 3 cut(s) 39, 121, 145
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 2 cut(s) 228, 489
BfmI CTRYAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 3 cut(s) 92, 297, 300
BlsI GCNGC 3 cut(s) 93, 298, 301
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 2 cut(s) 69, 133
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 4 cut(s) 178, 293, 433, 455
BmuI ACTGGG 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 232
BsaHI GRCGYC 2 cut(s) 39, 68
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 201
Bse1I ACTGG 3 cut(s) 69, 142, 374
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 4 cut(s) 169, 284, 446, 448
BseMII CTCAG 4 cut(s) 38, 246, 405, 455
BseNI ACTGG 3 cut(s) 69, 142, 374
BseXI GCAGC 2 cut(s) 308, 311
BseYI CCCAGC 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 450
BslFI GGGAC 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 332
Bsp143I GATC 2 cut(s) 33, 84
BspACI CCGC 2 cut(s) 52, 92
BspCNI CTCAG 4 cut(s) 37, 245, 406, 456
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 69, 133
BspMAI CTGCAG 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 332
BsrI ACTGG 3 cut(s) 69, 142, 374
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 33, 84
BssNI GRCGYC 2 cut(s) 39, 68
Bst4CI ACNGT 2 cut(s) 352, 510
BstACI GRCGYC 2 cut(s) 39, 68
BstAPI GCANNNNNTGC 1 cut(s) 13
BstDEI CTNAG 4 cut(s) 24, 232, 414, 464
BstEII GGTNACC 1 cut(s) 372
BstF5I GGATG 4 cut(s) 169, 284, 446, 448
BstFNI CGCG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 91
BstKTI GATC 2 cut(s) 36, 87
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 2 cut(s) 33, 84
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 13, 249, 305
BstPI GGTNACC 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 74
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 308, 311
BstV2I GAAGAC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 386
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 4 cut(s) 169, 284, 446, 448
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 453, 506
CaiI CAGNNNCTG 1 cut(s) 82
CfoI GCGC 2 cut(s) 70, 91
Cfr13I GGNCC 1 cut(s) 479
Csp6I GTAC 1 cut(s) 49
CviAII CATG 1 cut(s) 280
CviJI RGCY 9 cut(s) 126, 132, 140, 221, 231, 252, 308, 322, 360
CviKI_1 RGCY 9 cut(s) 126, 132, 140, 221, 231, 252, 308, 322, 360
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 4 cut(s) 24, 232, 414, 464
DinI GGCGCC 1 cut(s) 69
DpnI GATC 2 cut(s) 35, 86
DpnII GATC 2 cut(s) 33, 84
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 275
Eco91I GGTNACC 1 cut(s) 372
EcoO65I GGTNACC 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 448
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
FaeI CATG 1 cut(s) 283
FaiI YATR 4 cut(s) 153, 241, 281, 477
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 244
FatI CATG 1 cut(s) 279
Fnu4HI GCNGC 3 cut(s) 92, 297, 300
FokI GGATG 4 cut(s) 156, 271, 433, 455
Fsp4HI GCNGC 3 cut(s) 92, 297, 300
FspBI CTAG 2 cut(s) 228, 489
GlaI GCGC 2 cut(s) 69, 90
GluI GCNGC 3 cut(s) 92, 297, 300
GsaI CCCAGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 71
HapII CCGG 1 cut(s) 450
HhaI GCGC 2 cut(s) 70, 91
Hin1I GRCGYC 2 cut(s) 39, 68
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 2 cut(s) 68, 89
HinP1I GCGC 2 cut(s) 68, 89
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HinfI GANTC 2 cut(s) 79, 466
HpaII CCGG 1 cut(s) 450
HphI GGTGA 1 cut(s) 366
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 2 cut(s) 84, 202
Hpy188III TCNNGA 2 cut(s) 234, 288
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 2 cut(s) 41, 60
HpyAV CCTTC 6 cut(s) 358, 417, 424, 432, 489, 492
HpyCH4III ACNGT 2 cut(s) 352, 510
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 4 cut(s) 76, 169, 243, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 249, 305
HpyF3I CTNAG 4 cut(s) 24, 232, 414, 464
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 2 cut(s) 39, 68
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 2 cut(s) 68, 89
KasI GGCGCC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 33, 84
LmnI GCTCC 2 cut(s) 4, 137
Lsp1109I GCAGC 2 cut(s) 308, 311
LweI GCATC 4 cut(s) 178, 293, 433, 455
MaeI CTAG 2 cut(s) 228, 489
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 372
MalI GATC 2 cut(s) 35, 86
MboI GATC 2 cut(s) 33, 84
MboII GAAGA 3 cut(s) 34, 446, 504
MluCI AATT 1 cut(s) 519
Mly113I GGCGCC 1 cut(s) 68
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 7 cut(s) 11, 81, 94, 196, 211, 319, 388
Mph1103I ATGCAT 1 cut(s) 448
MslI CAYNNNNRTG 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 360
MspI CCGG 1 cut(s) 450
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 13, 249, 305
NarI GGCGCC 1 cut(s) 68
NdeII GATC 2 cut(s) 33, 84
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 2 cut(s) 69, 133
NmuCI GTSAC 1 cut(s) 372
NsiI ATGCAT 1 cut(s) 448
OliI CACNNNNGTG 1 cut(s) 211
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 3 cut(s) 93, 298, 301
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 474
PluTI GGCGCC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 474
PspEI GGTNACC 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 69, 133
PspPI GGNCC 1 cut(s) 479
PstI CTGCAG 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 82
PvuI CGATCG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 360
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 211
SatI GCNGC 3 cut(s) 92, 297, 300
Sau3AI GATC 2 cut(s) 33, 84
Sau96I GGNCC 1 cut(s) 479
SchI GAGTC 1 cut(s) 475
SetI ASST 8 cut(s) 22, 42, 128, 233, 279, 362, 399, 424
SfaNI GCATC 4 cut(s) 178, 293, 433, 455
SfcI CTRYAG 1 cut(s) 74
SfoI GGCGCC 1 cut(s) 69
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 211
Sse9I AATT 1 cut(s) 519
SsiI CCGC 2 cut(s) 52, 92
SspDI GGCGCC 1 cut(s) 67
SspMI CTAG 2 cut(s) 228, 489
TaaI ACNGT 2 cut(s) 352, 510
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 36, 428
TasI AATT 1 cut(s) 519
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 79
TscAI CASTG 2 cut(s) 460, 513
TseFI GTSAC 1 cut(s) 372
TseI GCWGC 2 cut(s) 296, 299
Tsp45I GTSAC 1 cut(s) 372
TspDTI ATGAA 1 cut(s) 414
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 2 cut(s) 460, 513
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 519
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XspI CTAG 2 cut(s) 228, 489
ZraI GACGTC 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.