Rorug03G0282100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000708
Physical Location & Seq
Reverse (-)
28316151 .. 28316959
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0282100.1

Sequence Viewer

Length: 594 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGCATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCCCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.61

Weight (kDa)

5.35

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 6.2e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 1 cut(s) 528
AclI AACGTT 1 cut(s) 549
AclWI GGATC 3 cut(s) 141, 327, 340
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 91
AfeI AGCGCT 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 1 cut(s) 425
AhlI ACTAGT 2 cut(s) 314, 359
AjnI CCWGG 2 cut(s) 92, 414
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 562, 584
AluI AGCT 4 cut(s) 53, 199, 562, 584
Alw21I GWGCWC 2 cut(s) 450, 564
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 446
AlwI GGATC 3 cut(s) 141, 327, 340
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 578
Aor51HI AGCGCT 1 cut(s) 499
ApaLI GTGCAC 1 cut(s) 446
ApeKI GCWGC 3 cut(s) 50, 293, 584
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 354
BaeGI GKGCMC 3 cut(s) 164, 306, 450
BamHI GGATCC 1 cut(s) 332
BanII GRGCYC 2 cut(s) 262, 564
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 450, 564
BbvI GCAGC 3 cut(s) 62, 280, 571
BccI CCATC 2 cut(s) 368, 583
BceAI ACGGC 2 cut(s) 72, 466
BciT130I CCWGG 2 cut(s) 94, 416
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 359
BfaI CTAG 3 cut(s) 315, 360, 592
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 501
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 585
BlpI GCTNAGC 1 cut(s) 563
BlsI GCNGC 3 cut(s) 52, 295, 586
Bme1390I CCNGG 2 cut(s) 94, 416
Bme18I GGWCC 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 4 cut(s) 6, 245, 334, 355
BmrFI CCNGG 2 cut(s) 94, 416
BpmI CTGGAG 3 cut(s) 93, 179, 282
Bpu10I CCTNAGC 1 cut(s) 523
Bpu1102I GCTNAGC 1 cut(s) 563
BpuEI CTTGAG 2 cut(s) 113, 578
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse1I ACTGG 2 cut(s) 205, 299
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 2 cut(s) 94, 416
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 2 cut(s) 386, 575
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 2 cut(s) 537, 577
BseNI ACTGG 2 cut(s) 205, 299
BseRI GAGGAG 3 cut(s) 44, 417, 420
BseSI GKGCMC 3 cut(s) 164, 306, 450
BseXI GCAGC 3 cut(s) 62, 280, 571
BsiHKAI GWGCWC 2 cut(s) 450, 564
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 5 cut(s) 164, 262, 306, 450, 564
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 4 cut(s) 133, 186, 332, 409
Bsp1720I GCTNAGC 1 cut(s) 563
BspACI CCGC 1 cut(s) 528
BspCNI CTCAG 2 cut(s) 536, 576
BspEI TCCGGA 1 cut(s) 578
BspLI GGNNCC 4 cut(s) 6, 245, 334, 355
BspPI GGATC 3 cut(s) 141, 327, 340
BsrI ACTGG 2 cut(s) 205, 299
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 4 cut(s) 133, 186, 332, 409
BssNI GRCGYC 1 cut(s) 459
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 416
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 523, 563
BstEII GGTNACC 2 cut(s) 467, 530
BstF5I GGATG 2 cut(s) 386, 575
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 4 cut(s) 136, 189, 335, 412
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 133, 186, 332, 409
BstNI CCWGG 2 cut(s) 94, 416
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 2 cut(s) 467, 530
BstSCI CCNGG 2 cut(s) 92, 414
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 450
BstV1I GCAGC 3 cut(s) 62, 280, 571
BstX2I RGATCY 3 cut(s) 133, 186, 332
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 3 cut(s) 133, 186, 332
BtsCI GGATG 2 cut(s) 386, 575
BtsIMutI CAGTG 2 cut(s) 306, 544
CfoI GCGC 1 cut(s) 500
Cfr13I GGNCC 1 cut(s) 354
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 1 cut(s) 90
CviAII CATG 3 cut(s) 70, 215, 307
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 523, 563
DpnI GATC 4 cut(s) 135, 188, 334, 411
DpnII GATC 4 cut(s) 133, 186, 332, 409
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 562
Eco24I GRGCYC 2 cut(s) 262, 564
Eco47I GGWCC 1 cut(s) 354
Eco47III AGCGCT 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 467, 530
EcoICRI GAGCTC 1 cut(s) 562
EcoO65I GGTNACC 2 cut(s) 467, 530
EcoRII CCWGG 2 cut(s) 92, 414
EcoT38I GRGCYC 2 cut(s) 262, 564
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 5 cut(s) 71, 144, 210, 216, 308
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 585
FokI GGATG 2 cut(s) 373, 562
FriOI GRGCYC 2 cut(s) 262, 564
Fsp4HI GCNGC 3 cut(s) 51, 294, 585
FspBI CTAG 3 cut(s) 315, 360, 592
GlaI GCGC 1 cut(s) 499
GluI GCNGC 3 cut(s) 51, 294, 585
GsuI CTGGAG 3 cut(s) 93, 179, 282
HaeII RGCGCY 1 cut(s) 501
HapII CCGG 1 cut(s) 579
HhaI GCGC 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 3 cut(s) 73, 218, 310
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 1 cut(s) 579
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 357, 448
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 557, 579
Hpy8I GTNNAC 2 cut(s) 357, 448
HpyAV CCTTC 2 cut(s) 469, 485
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 3 cut(s) 252, 459, 549
HpyCH4V TGCA 2 cut(s) 394, 448
HpyF3I CTNAG 2 cut(s) 523, 563
HpySE526I ACGT 3 cut(s) 252, 459, 549
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 3 cut(s) 73, 218, 310
HspAI GCGC 1 cut(s) 498
Kpn2I TCCGGA 1 cut(s) 578
Kzo9I GATC 4 cut(s) 133, 186, 332, 409
LmnI GCTCC 2 cut(s) 301, 581
Lsp1109I GCAGC 3 cut(s) 62, 280, 571
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 360, 592
MaeII ACGT 3 cut(s) 252, 459, 549
MaeIII GTNAC 3 cut(s) 467, 506, 530
MalI GATC 4 cut(s) 135, 188, 334, 411
MboI GATC 4 cut(s) 133, 186, 332, 409
MboII GAAGA 1 cut(s) 422
MflI RGATCY 3 cut(s) 133, 186, 332
MhlI GDGCHC 5 cut(s) 164, 262, 306, 450, 564
MluCI AATT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 578
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 2 cut(s) 94, 416
MvaI CCWGG 2 cut(s) 94, 416
NdeII GATC 4 cut(s) 133, 186, 332, 409
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 4 cut(s) 6, 245, 334, 355
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 3 cut(s) 52, 295, 586
Psp124BI GAGCTC 1 cut(s) 564
Psp1406I AACGTT 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 92, 414
PspEI GGTNACC 2 cut(s) 467, 530
PspGI CCWGG 2 cut(s) 92, 414
PspN4I GGNNCC 4 cut(s) 6, 245, 334, 355
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 3 cut(s) 133, 186, 332
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 585
Sau3AI GATC 4 cut(s) 133, 186, 332, 409
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 94, 416
SduI GDGCHC 5 cut(s) 164, 262, 306, 450, 564
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 557
SmoI CTYRAG 3 cut(s) 128, 261, 557
SpeI ACTAGT 2 cut(s) 314, 359
Sse9I AATT 1 cut(s) 346
SsiI CCGC 1 cut(s) 528
SspMI CTAG 3 cut(s) 315, 360, 592
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 92, 414
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 3 cut(s) 255, 462, 552
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 346
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 306, 544
TseI GCWGC 3 cut(s) 50, 293, 584
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 306, 544
VneI GTGCAC 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 354
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 3 cut(s) 315, 360, 592
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.